Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 110.54409 * 2 1 4 4 O 1.42108 * 110.53883 * 223.25521 * 2 1 3 5 5 N 1.65594 * 104.44934 * 111.62815 * 2 1 3 6 6 C 1.46497 * 120.00168 * 64.99956 * 5 2 1 7 7 C 1.52997 * 109.47229 * 164.99939 * 6 5 2 8 8 N 1.46505 * 109.47071 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99589 * 179.97438 * 9 8 7 12 12 C 1.39949 * 119.99788 * 185.31502 * 11 9 8 13 13 C 1.38861 * 120.06903 * 33.26678 * 12 11 9 14 14 C 1.38116 * 119.93328 * 180.02562 * 13 12 11 15 15 C 1.38287 * 120.06466 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92484 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46870 * 90.01056 * 16 15 14 18 18 H 1.07994 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99810 * 180.27354 * 17 16 15 20 20 N 1.31517 * 120.00222 * 359.72186 * 19 17 16 21 21 Si 1.86799 * 119.99728 * 179.72113 * 19 17 16 22 22 H 1.48495 * 109.47274 * 90.00123 * 21 19 17 23 23 H 1.48503 * 109.47047 * 210.00112 * 21 19 17 24 24 H 1.48503 * 109.47432 * 329.99693 * 21 19 17 25 25 C 1.38279 * 120.14016 * 0.24114 * 15 14 13 26 26 C 1.38115 * 120.07169 * 359.47888 * 25 15 14 27 27 H 1.09002 * 109.46796 * 308.37497 * 1 2 3 28 28 H 1.08997 * 109.47118 * 68.37090 * 1 2 3 29 29 H 1.08999 * 109.47130 * 188.37241 * 1 2 3 30 30 H 0.96999 * 120.00135 * 244.99593 * 5 2 1 31 31 H 1.09002 * 109.47384 * 44.99842 * 6 5 2 32 32 H 1.09005 * 109.47127 * 285.00132 * 6 5 2 33 33 H 1.08994 * 109.47104 * 59.99975 * 7 6 5 34 34 H 1.09004 * 109.47172 * 299.99581 * 7 6 5 35 35 H 0.96995 * 120.00061 * 359.97438 * 8 7 6 36 36 H 0.96997 * 120.00223 * 5.31353 * 11 9 8 37 37 H 1.08002 * 120.04104 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96795 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47970 * 330.00567 * 16 15 14 40 40 H 1.09009 * 109.46993 * 210.00326 * 16 15 14 41 41 H 0.96992 * 119.99761 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96119 * 179.72073 * 25 15 14 43 43 H 1.07994 * 120.03965 * 180.25449 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9707 1.8506 7 6 2.6875 -2.3832 3.0899 8 7 2.3515 -3.7631 3.4495 9 6 2.9360 -4.3427 4.5168 10 8 3.7424 -3.7206 5.1808 11 7 2.6264 -5.6119 4.8479 12 6 3.1470 -6.1767 6.0178 13 6 3.3642 -5.3832 7.1365 14 6 3.8785 -5.9434 8.2894 15 6 4.1776 -7.2930 8.3302 16 6 4.7392 -7.9008 9.5896 17 6 3.6088 -8.3819 10.4625 18 1 2.5861 -8.2593 10.1380 19 6 3.8801 -8.9729 11.6783 20 7 5.1255 -9.1218 12.0738 21 14 2.4787 -9.5622 12.7637 22 1 2.1543 -10.9726 12.4311 23 1 2.8844 -9.4705 14.1893 24 1 1.2831 -8.7118 12.5338 25 6 3.9676 -8.0847 7.2161 26 6 3.4481 -7.5316 6.0620 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.6921 -0.0238 2.1255 31 1 2.1393 -2.6334 1.0217 32 1 0.8242 -2.0406 2.0645 33 1 2.4390 -1.7205 3.9188 34 1 3.7541 -2.3133 2.8761 35 1 1.7079 -4.2592 2.9200 36 1 2.0429 -6.1340 4.2754 37 1 3.1313 -4.3291 7.1051 38 1 4.0473 -5.3269 9.1599 39 1 5.3198 -7.1513 10.1273 40 1 5.3823 -8.7422 9.3315 41 1 5.3163 -9.5379 12.9289 42 1 4.2064 -9.1374 7.2497 43 1 3.2804 -8.1512 5.1936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674849899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -75.071130 kcal Electronic energy + Delta-G solvation = -25675.511320 eV Core-core repulsion = 21654.954503 eV Total energy + Delta-G solvation = -4020.556816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57796 -38.49698 -37.70748 -36.90202 -36.50044 -34.88152 -34.33932 -32.97168 -30.57321 -30.27233 -30.12360 -28.72946 -26.44102 -23.78150 -22.94194 -22.36460 -21.29643 -20.18700 -20.05253 -18.69851 -18.29805 -17.34865 -16.92863 -16.81848 -16.29148 -16.15593 -15.62764 -15.18282 -15.05074 -14.86428 -14.61839 -14.20391 -14.02463 -13.84684 -13.80755 -13.05036 -12.94953 -12.85073 -12.76318 -12.66058 -12.56579 -12.47688 -12.16714 -11.99692 -11.64697 -11.38319 -11.26487 -10.83206 -10.63273 -10.40412 -10.23364 -10.21164 -9.91750 -9.48984 -9.42740 -9.24661 -8.41018 -8.27104 -7.34972 -6.02240 -4.06288 -0.36261 1.89697 1.99529 2.08717 2.55747 3.10544 3.20947 3.30738 3.37101 3.41103 3.57696 3.93793 4.05044 4.14369 4.32417 4.39424 4.41828 4.58546 4.68527 4.86936 5.02251 5.30507 5.31593 5.39697 5.45439 5.57961 5.93338 6.00170 6.04452 6.12854 6.21864 6.29135 6.50707 6.67061 6.93310 7.00971 7.18867 7.23275 7.53826 7.73329 7.79174 7.89120 7.93564 8.34220 8.42172 8.99099 9.57294 11.07310 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.001500 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.567019 B =18665.670407 C =18742.942155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.618 3.382 3 O -0.956 6.956 4 O -0.955 6.955 5 N -1.117 6.117 6 C 0.103 3.897 7 C 0.133 3.867 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.568 6.568 11 N -0.680 5.680 12 C 0.122 3.878 13 C -0.117 4.117 14 C -0.107 4.107 15 C -0.044 4.044 16 C 0.047 3.953 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.107 4.107 26 C -0.145 4.145 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.422 0.578 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.122 0.878 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 15.674 -25.874 32.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.710 3.290 3 O -0.946 6.946 4 O -0.944 6.944 5 N -0.877 5.877 6 C -0.024 4.024 7 C 0.007 3.993 8 N -0.405 5.405 9 C 0.403 3.597 10 O -0.444 6.444 11 N -0.327 5.327 12 C 0.029 3.971 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.045 4.045 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.126 4.126 26 C -0.165 4.165 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.257 0.743 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.236 0.764 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.140 0.860 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.904 16.392 -25.952 32.575 hybrid contribution -1.897 -0.773 0.682 2.159 sum -12.802 15.619 -25.271 32.349 Atomic orbital electron populations 1.30529 1.28234 1.11725 1.11836 1.04661 0.77541 0.73854 0.72974 1.93644 1.77937 1.37541 1.85478 1.93636 1.76988 1.61855 1.61961 1.55469 1.74570 1.20718 1.36977 1.21419 0.99445 0.82669 0.98859 1.21239 1.00246 0.82004 0.95823 1.44866 1.48508 1.15145 1.31957 1.15851 0.81196 0.81722 0.80931 1.90983 1.36451 1.63404 1.53526 1.42441 1.52137 1.12725 1.25382 1.17274 1.02314 0.92428 0.85079 1.20995 1.01399 0.99784 0.91521 1.20995 0.99398 0.95214 0.96969 1.20706 0.94450 0.92876 0.96425 1.18353 0.96165 0.96024 0.88399 1.21073 0.92686 1.38797 1.02363 0.92462 1.25018 0.95610 0.95969 0.97789 1.69959 1.17926 1.43954 1.21452 0.86540 0.82381 0.79103 0.79673 1.20635 1.21197 1.19852 1.20869 0.99748 0.99840 0.92142 1.20701 1.03516 0.93293 0.99032 0.85076 0.85189 0.85347 0.74256 0.89292 0.91006 0.90536 0.90373 0.76889 0.76404 0.85791 0.86114 0.95281 0.95319 0.92869 0.86008 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -0.68 10.89 101.05 1.10 0.42 16 2 S 2.62 11.66 6.10 -107.50 -0.66 11.01 16 3 O -0.96 -8.04 18.08 -57.54 -1.04 -9.08 16 4 O -0.95 -7.98 17.50 -57.54 -1.01 -8.98 16 5 N -1.12 -3.74 5.88 -10.61 -0.06 -3.81 16 6 C 0.10 0.31 6.25 -4.05 -0.03 0.29 16 7 C 0.13 0.81 5.82 -4.04 -0.02 0.78 16 8 N -0.75 -5.30 5.56 -65.22 -0.36 -5.66 16 9 C 0.70 8.63 8.30 -86.92 -0.72 7.91 16 10 O -0.57 -9.59 14.03 5.29 0.07 -9.51 16 11 N -0.68 -7.96 5.35 -14.22 -0.08 -8.03 16 12 C 0.12 1.95 6.28 -83.69 -0.53 1.43 16 13 C -0.12 -2.14 8.65 -39.40 -0.34 -2.48 16 14 C -0.11 -2.18 9.69 -39.61 -0.38 -2.57 16 15 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 16 C 0.05 1.22 5.10 -29.03 -0.15 1.08 16 17 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.11 -2.05 9.69 -39.61 -0.38 -2.43 16 26 C -0.14 -2.31 9.96 -39.39 -0.39 -2.71 16 27 H 0.13 0.00 8.14 -51.92 -0.42 -0.43 16 28 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.13 -0.05 8.14 -51.92 -0.42 -0.48 16 30 H 0.42 1.14 8.62 -34.47 -0.30 0.85 16 31 H 0.09 0.27 7.69 -51.93 -0.40 -0.13 16 32 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 1.39 8.49 -40.82 -0.35 1.05 16 36 H 0.40 3.08 8.83 -40.82 -0.36 2.72 16 37 H 0.12 2.25 6.41 -52.49 -0.34 1.92 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.03 0.77 8.08 -51.92 -0.42 0.35 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -40.03 382.19 -10.37 -50.40 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.93 Total: -0.03 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.79 Total: -12.81 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.24 Total: -43.17 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.97 Total: -27.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -0.66 Total: 11.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.03 -10.37 -50.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674849899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -40.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds