Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 110.54409 * 2 1 4 4 O 1.42108 * 110.53883 * 223.25521 * 2 1 3 5 5 N 1.65594 * 104.44934 * 111.62815 * 2 1 3 6 6 C 1.46497 * 120.00168 * 64.99956 * 5 2 1 7 7 C 1.52997 * 109.47229 * 164.99939 * 6 5 2 8 8 N 1.46505 * 109.47071 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99872 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99589 * 179.97438 * 9 8 7 12 12 C 1.39949 * 119.99788 * 185.31502 * 11 9 8 13 13 C 1.38861 * 120.06903 * 33.26678 * 12 11 9 14 14 C 1.38116 * 119.93328 * 180.02562 * 13 12 11 15 15 C 1.38287 * 120.06466 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92484 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46870 * 90.01056 * 16 15 14 18 18 H 1.07994 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99810 * 180.27354 * 17 16 15 20 20 N 1.31517 * 120.00222 * 359.72186 * 19 17 16 21 21 Si 1.86799 * 119.99728 * 179.72113 * 19 17 16 22 22 H 1.48495 * 109.47274 * 90.00123 * 21 19 17 23 23 H 1.48503 * 109.47047 * 210.00112 * 21 19 17 24 24 H 1.48503 * 109.47432 * 329.99693 * 21 19 17 25 25 C 1.38279 * 120.14016 * 0.24114 * 15 14 13 26 26 C 1.38115 * 120.07169 * 359.47888 * 25 15 14 27 27 H 1.09002 * 109.46796 * 308.37497 * 1 2 3 28 28 H 1.08997 * 109.47118 * 68.37090 * 1 2 3 29 29 H 1.08999 * 109.47130 * 188.37241 * 1 2 3 30 30 H 0.96999 * 120.00135 * 244.99593 * 5 2 1 31 31 H 1.09002 * 109.47384 * 44.99842 * 6 5 2 32 32 H 1.09005 * 109.47127 * 285.00132 * 6 5 2 33 33 H 1.08994 * 109.47104 * 59.99975 * 7 6 5 34 34 H 1.09004 * 109.47172 * 299.99581 * 7 6 5 35 35 H 0.96995 * 120.00061 * 359.97438 * 8 7 6 36 36 H 0.96997 * 120.00223 * 5.31353 * 11 9 8 37 37 H 1.08002 * 120.04104 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96795 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47970 * 330.00567 * 16 15 14 40 40 H 1.09009 * 109.46993 * 210.00326 * 16 15 14 41 41 H 0.96992 * 119.99761 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.96119 * 179.72073 * 25 15 14 43 43 H 1.07994 * 120.03965 * 180.25449 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9707 1.8506 7 6 2.6875 -2.3832 3.0899 8 7 2.3515 -3.7631 3.4495 9 6 2.9360 -4.3427 4.5168 10 8 3.7424 -3.7206 5.1808 11 7 2.6264 -5.6119 4.8479 12 6 3.1470 -6.1767 6.0178 13 6 3.3642 -5.3832 7.1365 14 6 3.8785 -5.9434 8.2894 15 6 4.1776 -7.2930 8.3302 16 6 4.7392 -7.9008 9.5896 17 6 3.6088 -8.3819 10.4625 18 1 2.5861 -8.2593 10.1380 19 6 3.8801 -8.9729 11.6783 20 7 5.1255 -9.1218 12.0738 21 14 2.4787 -9.5622 12.7637 22 1 2.1543 -10.9726 12.4311 23 1 2.8844 -9.4705 14.1893 24 1 1.2831 -8.7118 12.5338 25 6 3.9676 -8.0847 7.2161 26 6 3.4481 -7.5316 6.0620 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.6921 -0.0238 2.1255 31 1 2.1393 -2.6334 1.0217 32 1 0.8242 -2.0406 2.0645 33 1 2.4390 -1.7205 3.9188 34 1 3.7541 -2.3133 2.8761 35 1 1.7079 -4.2592 2.9200 36 1 2.0429 -6.1340 4.2754 37 1 3.1313 -4.3291 7.1051 38 1 4.0473 -5.3269 9.1599 39 1 5.3198 -7.1513 10.1273 40 1 5.3823 -8.7422 9.3315 41 1 5.3163 -9.5379 12.9289 42 1 4.2064 -9.1374 7.2497 43 1 3.2804 -8.1512 5.1936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674849899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -108.545477 kcal Electronic energy + Delta-G solvation = -25676.962876 eV Core-core repulsion = 21654.954503 eV Total energy + Delta-G solvation = -4022.008373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63341 -39.79257 -38.19718 -37.46008 -36.98845 -36.19646 -35.13840 -34.76602 -32.17492 -31.73049 -30.23903 -29.51809 -28.03405 -25.21343 -23.94444 -23.63807 -22.43407 -21.57874 -20.41650 -19.60309 -18.82744 -18.49240 -18.32816 -17.31762 -17.21752 -16.95559 -16.75447 -16.28581 -15.94645 -15.87095 -15.59405 -15.48653 -15.07264 -14.55953 -14.47720 -14.23709 -14.01591 -13.92274 -13.67780 -13.38451 -13.32035 -13.22148 -13.16474 -13.09107 -12.96916 -12.59207 -12.58734 -12.45220 -12.02433 -11.94510 -11.67803 -11.53878 -11.27980 -10.90363 -10.58237 -10.46661 -10.15334 -9.72582 -8.79075 -8.15795 -6.30978 -0.66337 0.52146 0.61344 1.41179 1.42801 1.43024 1.54174 1.92555 2.07599 2.42139 2.92643 3.05994 3.13042 3.22178 3.32800 3.65288 4.08720 4.09054 4.12647 4.19314 4.24715 4.42113 4.44359 4.56055 4.63994 4.69364 4.76326 4.89923 4.98040 5.03160 5.15670 5.33023 5.35843 5.38012 5.45130 5.53197 5.65609 5.78283 5.99032 6.04003 6.12486 6.15885 6.29565 6.81964 7.01894 7.37473 7.50046 8.91828 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.001500 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.567019 B =18665.670407 C =18742.942155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.625 3.375 3 O -1.004 7.004 4 O -1.001 7.001 5 N -1.118 6.118 6 C 0.106 3.894 7 C 0.130 3.870 8 N -0.721 5.721 9 C 0.698 3.302 10 O -0.618 6.618 11 N -0.666 5.666 12 C 0.140 3.860 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.078 4.078 16 C 0.056 3.944 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.266 1.266 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.154 0.846 30 H 0.424 0.576 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.420 0.580 36 H 0.426 0.574 37 H 0.124 0.876 38 H 0.108 0.892 39 H -0.002 1.002 40 H 0.006 0.994 41 H 0.265 0.735 42 H 0.126 0.874 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 15.330 -28.128 35.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.722 3.278 3 O -0.994 6.994 4 O -0.991 6.991 5 N -0.878 5.878 6 C -0.021 4.021 7 C 0.004 3.996 8 N -0.379 5.379 9 C 0.398 3.602 10 O -0.497 6.497 11 N -0.315 5.315 12 C 0.045 3.955 13 C -0.144 4.144 14 C -0.139 4.139 15 C -0.079 4.079 16 C 0.019 3.981 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.131 4.131 26 C -0.149 4.149 27 H 0.168 0.832 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.260 0.740 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.257 0.743 36 H 0.265 0.735 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.144 0.856 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.590 16.043 -28.289 35.645 hybrid contribution -0.801 -0.583 1.253 1.597 sum -15.391 15.460 -27.036 34.740 Atomic orbital electron populations 1.30323 1.22683 1.14019 1.13437 1.04163 0.79288 0.72091 0.72296 1.93579 1.80197 1.39621 1.86052 1.93575 1.79316 1.62627 1.63565 1.55284 1.75197 1.20981 1.36359 1.21514 1.01034 0.82272 0.97260 1.21316 0.99843 0.81243 0.97211 1.44627 1.47599 1.15426 1.30291 1.16080 0.80966 0.81537 0.81602 1.90968 1.38748 1.64494 1.55474 1.42214 1.52121 1.12909 1.24257 1.17316 1.00141 0.92373 0.85630 1.20999 1.01661 1.00028 0.91697 1.20907 1.00557 0.94693 0.97760 1.20390 0.97627 0.93863 0.96037 1.18093 0.95303 0.94424 0.90232 1.21405 0.93118 1.38847 1.03127 0.92498 1.25962 0.98337 0.95986 0.99290 1.70093 1.20194 1.44809 1.22064 0.85410 0.78990 0.78938 0.77485 1.19439 1.20714 1.19014 1.20965 0.99927 0.99881 0.92352 1.20998 1.01295 0.93536 0.99093 0.83226 0.83943 0.82815 0.74025 0.88960 0.87160 0.90870 0.92367 0.74271 0.73526 0.85836 0.87396 0.98394 0.97565 0.92643 0.85627 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 1.23 10.89 113.37 1.23 2.47 16 2 S 2.63 20.23 6.10 -56.49 -0.34 19.88 16 3 O -1.00 -17.00 18.08 -127.65 -2.31 -19.31 16 4 O -1.00 -16.12 17.50 -127.65 -2.23 -18.35 16 5 N -1.12 -5.67 5.88 -187.49 -1.10 -6.77 16 6 C 0.11 0.32 6.25 86.38 0.54 0.86 16 7 C 0.13 1.32 5.82 86.38 0.50 1.82 16 8 N -0.72 -7.96 5.56 -478.53 -2.66 -10.62 16 9 C 0.70 15.50 8.30 179.05 1.49 16.98 16 10 O -0.62 -20.41 14.03 -3.98 -0.06 -20.46 16 11 N -0.67 -13.29 5.35 -317.18 -1.70 -14.98 16 12 C 0.14 4.17 6.28 38.14 0.24 4.41 16 13 C -0.12 -4.51 8.65 22.39 0.19 -4.31 16 14 C -0.12 -5.11 9.69 22.25 0.22 -4.89 16 15 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 16 C 0.06 3.10 5.10 29.10 0.15 3.25 16 17 C -0.53 -30.41 9.09 25.60 0.23 -30.17 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 21 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C -0.11 -4.24 9.69 22.25 0.22 -4.03 16 26 C -0.13 -3.74 9.96 22.39 0.22 -3.52 16 27 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.15 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H 0.42 1.98 8.62 -96.75 -0.83 1.15 16 31 H 0.09 0.27 7.69 -2.39 -0.02 0.25 16 32 H 0.11 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.42 1.04 8.49 -92.71 -0.79 0.25 16 36 H 0.43 4.44 8.83 -92.71 -0.82 3.62 16 37 H 0.12 4.52 6.41 -2.91 -0.02 4.50 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 40 H 0.01 0.35 8.08 -2.38 -0.02 0.33 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -92.32 382.19 -3.87 -96.20 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -1.37 Total: 4.75 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 5.59 Total: -20.22 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -5.18 Total: -88.88 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -4.60 Total: -58.12 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 20.23 SS G_CDS: -0.34 Total: 19.88 kcal Total: -92.32 -3.87 -96.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674849899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.350 kcal (2) G-P(sol) polarization free energy of solvation -92.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds