Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99825 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00522 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99597 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.46926 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99704 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00251 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99445 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00390 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99765 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46942 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47695 * 119.99665 * 15 13 11 18 18 H 1.48507 * 109.46740 * 239.99782 * 15 13 11 19 19 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 2 1 21 21 C 1.50702 * 119.99928 * 0.28128 * 19 2 1 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 2 23 23 C 1.41381 * 126.80196 * 124.71031 * 22 21 19 24 24 C 1.35446 * 103.98610 * 179.88302 * 23 22 21 25 25 O 1.34043 * 106.44555 * 0.36946 * 24 23 22 26 26 N 1.20922 * 111.56643 * 359.74669 * 25 24 23 27 27 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 28 28 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 29 29 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 30 30 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 31 31 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 32 32 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 33 33 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 34 34 H 1.09006 * 109.47343 * 300.00688 * 5 4 3 35 35 H 1.09005 * 109.46868 * 60.00504 * 5 4 3 36 36 H 0.96998 * 119.99783 * 0.02562 * 6 5 4 37 37 H 1.08994 * 109.47215 * 299.99825 * 9 7 6 38 38 H 1.08996 * 109.47249 * 60.00135 * 9 7 6 39 39 H 0.97005 * 119.99673 * 180.02562 * 14 13 11 40 40 H 1.09004 * 109.46965 * 299.72211 * 21 19 2 41 41 H 1.08994 * 109.46990 * 59.72065 * 21 19 2 42 42 H 1.07997 * 128.00622 * 0.02562 * 23 22 21 43 43 H 1.07998 * 126.77790 * 180.09110 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8239 7 6 4.1230 4.6065 -3.0701 8 8 4.5177 5.2887 -2.1483 9 6 4.3742 5.0415 -4.4910 10 16 5.2796 6.6088 -4.4910 11 6 5.4319 6.8740 -6.2263 12 1 5.0173 6.1580 -6.9205 13 6 6.0846 8.0033 -6.7010 14 7 6.5893 8.8762 -5.8549 15 14 6.2454 8.2849 -8.5406 16 1 5.5979 7.1658 -9.2712 17 1 5.5838 9.5633 -8.9055 18 1 7.6830 8.3491 -8.9077 19 6 2.1390 -1.1672 0.0005 20 8 3.3518 -1.1671 0.0010 21 6 1.3855 -2.4723 -0.0053 22 6 2.3649 -3.6176 -0.0103 23 6 2.4254 -4.6844 0.9156 24 6 3.4624 -5.4384 0.4791 25 8 3.9467 -4.8239 -0.6093 26 7 3.3263 -3.8178 -0.8647 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6083 2.0285 0.5137 31 1 3.1499 1.1385 0.5139 32 1 3.0417 0.9508 -1.9563 33 1 1.5001 1.8406 -1.9564 34 1 2.6274 3.7952 -0.9289 35 1 4.1693 2.9059 -0.9286 36 1 3.1453 2.9131 -3.5611 37 1 4.9634 4.2819 -5.0047 38 1 3.4218 5.1716 -5.0049 39 1 7.0452 9.6656 -6.1868 40 1 0.7588 -2.5340 0.8844 41 1 0.7590 -2.5261 -0.8955 42 1 1.7901 -4.8590 1.7713 43 1 3.8298 -6.3518 0.9231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687389891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -10.102811 kcal Electronic energy + Delta-G solvation = -25528.964134 eV Core-core repulsion = 21511.224555 eV Total energy + Delta-G solvation = -4017.739578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.29590 -40.37150 -39.10836 -36.61988 -35.08904 -34.92474 -32.41082 -32.32779 -31.97646 -30.04465 -29.00356 -27.34474 -25.59819 -25.20839 -23.53717 -22.44301 -21.64599 -20.35182 -19.54169 -18.19108 -18.03216 -17.81261 -17.32725 -16.72487 -16.38480 -16.04256 -15.66722 -15.64260 -15.05958 -14.78350 -14.49943 -14.19331 -13.97038 -13.81214 -13.58779 -13.34834 -13.10190 -13.02433 -12.94853 -12.65817 -12.57530 -12.35479 -11.82170 -11.77078 -11.65182 -11.07684 -11.04195 -10.99568 -10.73900 -10.65386 -10.15584 -9.99230 -9.78454 -9.43265 -9.11649 -9.05638 -8.84955 -8.20414 -6.47321 -6.19575 -3.89822 1.16826 1.76782 2.18555 2.51955 2.91318 3.08602 3.14104 3.23313 3.30269 3.35622 3.63962 3.76068 3.93938 4.20006 4.22530 4.50960 4.60250 4.66899 4.70155 4.73673 4.79092 4.81819 4.95897 5.02308 5.13647 5.15577 5.17073 5.23072 5.24822 5.35694 5.55058 5.57344 5.67973 5.85007 5.93317 5.95860 6.07755 6.17412 6.64956 6.85900 7.62173 7.73327 7.74747 7.93427 8.37766 8.65150 9.25862 10.87932 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.001579 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.550321 B =17724.407666 C =18549.186609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.618 5.618 3 C 0.119 3.881 4 C -0.146 4.146 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.513 3.487 20 O -0.517 6.517 21 C -0.059 4.059 22 C 0.018 3.982 23 C -0.230 4.230 24 C -0.061 4.061 25 O 0.107 5.893 26 N -0.334 5.334 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.604 -29.870 15.551 38.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.352 5.352 3 C -0.004 4.004 4 C -0.185 4.185 5 C 0.000 4.000 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.300 3.700 20 O -0.392 6.392 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.252 4.252 24 C -0.143 4.143 25 O 0.036 5.964 26 N -0.035 5.035 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.189 0.811 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -15.763 -27.876 16.051 35.821 hybrid contribution -1.127 -1.187 -1.780 2.419 sum -16.890 -29.063 14.271 36.518 Atomic orbital electron populations 1.21886 0.79158 1.03701 1.02188 1.47827 1.07120 1.05952 1.74343 1.21383 0.98299 0.84087 0.96598 1.22131 1.01075 0.97362 0.97887 1.21130 1.00143 0.94636 0.84084 1.45975 1.60357 1.24945 1.08073 1.20308 0.76706 0.79917 0.91329 1.90699 1.49290 1.53155 1.46096 1.23532 1.05376 1.06385 0.95104 1.85394 1.70457 1.17764 1.09812 1.22918 1.42821 1.11024 0.91553 0.90871 1.24996 0.94671 0.94933 0.99015 1.70033 1.34982 1.11007 1.34274 0.86113 0.78034 0.78244 0.83073 1.19629 1.20572 1.20561 1.20360 0.88150 0.84950 0.76588 1.90791 1.13638 1.86967 1.47768 1.20016 0.95924 0.88223 1.05817 1.22879 0.97988 0.98599 0.94680 1.22674 1.02632 0.96335 1.03533 1.26031 0.96620 1.01060 0.90544 1.84900 1.46240 1.27356 1.37870 1.73924 1.06440 1.00613 1.22483 0.92130 0.90443 0.90923 0.89838 0.89293 0.90753 0.91164 0.91530 0.91417 0.76857 0.89208 0.89242 0.92251 0.86637 0.86925 0.81098 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 10.25 59.85 0.61 0.83 16 2 N -0.62 -4.35 2.87 -181.57 -0.52 -4.87 16 3 C 0.12 0.96 5.41 -4.04 -0.02 0.94 16 4 C -0.15 -1.31 5.65 -26.73 -0.15 -1.46 16 5 C 0.12 1.51 5.67 -4.04 -0.02 1.49 16 6 N -0.74 -10.45 5.56 -60.29 -0.33 -10.79 16 7 C 0.53 10.36 7.85 -10.98 -0.09 10.27 16 8 O -0.52 -12.21 15.86 5.56 0.09 -12.12 16 9 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 11 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 12 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 15 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.51 4.85 7.67 -10.98 -0.08 4.77 16 20 O -0.52 -7.47 15.17 5.55 0.08 -7.38 16 21 C -0.06 -0.35 4.85 -29.03 -0.14 -0.50 16 22 C 0.02 0.16 6.10 -82.10 -0.50 -0.34 16 23 C -0.23 -1.32 11.12 -39.38 -0.44 -1.76 16 24 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 25 O 0.11 1.01 11.20 17.17 0.19 1.20 16 26 N -0.33 -3.88 11.46 33.42 0.38 -3.50 16 27 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 29 H 0.07 0.10 6.43 -51.93 -0.33 -0.23 16 30 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 4.50 8.47 -40.82 -0.35 4.15 16 37 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 0.30 8.11 -51.93 -0.42 -0.12 16 41 H 0.11 0.46 7.40 -51.93 -0.38 0.08 16 42 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.22 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -41.19 388.00 -6.87 -48.06 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.06 Total: -1.53 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.05 Total: -1.93 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.26 Total: -44.96 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.36 Total: -18.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -41.19 -6.87 -48.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687389891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.959 kcal (2) G-P(sol) polarization free energy of solvation -41.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds