Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00252 * 2 1 4 4 O 1.21277 * 119.99938 * 174.97087 * 3 2 1 5 5 C 1.50694 * 119.99616 * 354.96658 * 3 2 1 6 6 C 1.50697 * 115.55315 * 280.28974 * 5 3 2 7 7 N 1.34781 * 120.00256 * 300.75695 * 6 5 3 8 8 O 1.21279 * 119.99891 * 120.75891 * 6 5 3 9 9 C 1.53007 * 117.49772 * 134.58443 * 5 3 2 10 10 C 1.52999 * 117.49905 * 65.96318 * 5 3 2 11 11 C 1.46499 * 120.00108 * 179.97438 * 2 1 3 12 12 C 1.53498 * 114.20780 * 59.99729 * 11 2 1 13 13 N 1.47064 * 87.98855 * 220.35003 * 12 11 2 14 14 C 1.34772 * 136.05546 * 207.08798 * 13 12 11 15 15 O 1.21285 * 120.00330 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00145 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47624 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00172 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00495 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99496 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47285 * 119.99682 * 22 20 18 25 25 H 1.48503 * 109.46895 * 239.99688 * 22 20 18 26 26 C 1.47068 * 87.88500 * 27.34064 * 13 12 11 27 27 H 1.08992 * 109.46812 * 275.02809 * 1 2 3 28 28 H 1.09004 * 109.46394 * 35.03257 * 1 2 3 29 29 H 1.09001 * 109.46636 * 155.02472 * 1 2 3 30 30 H 0.97005 * 119.99379 * 5.00464 * 7 6 5 31 31 H 0.96997 * 120.00371 * 184.99914 * 7 6 5 32 32 H 1.09004 * 117.49604 * 0.02562 * 9 5 3 33 33 H 1.08995 * 117.50152 * 145.01794 * 9 5 3 34 34 H 1.08995 * 117.50080 * 214.97499 * 10 5 3 35 35 H 1.08998 * 117.49672 * 0.02562 * 10 5 3 36 36 H 1.08996 * 113.41705 * 193.20080 * 11 2 1 37 37 H 1.09008 * 113.46692 * 105.56645 * 12 11 2 38 38 H 1.09003 * 113.46945 * 335.13306 * 12 11 2 39 39 H 1.09004 * 109.47394 * 300.00364 * 16 14 13 40 40 H 1.09003 * 109.46712 * 59.99543 * 16 14 13 41 41 H 0.97004 * 119.99639 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.46095 * 87.43765 * 26 13 12 43 43 H 1.09000 * 113.46897 * 217.87586 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3482 1.1691 0.0921 5 6 1.3898 2.4697 -0.1145 6 6 0.9584 2.8512 -1.5071 7 7 1.8793 3.0088 -2.4785 8 8 -0.2175 3.0165 -1.7537 9 6 1.7886 3.6000 0.8365 10 6 0.4666 2.8578 1.0422 11 6 2.1975 -1.2687 0.0006 12 6 1.9060 -2.1644 -1.2114 13 7 1.9118 -3.3158 -0.2966 14 6 2.1757 -4.6336 -0.3970 15 8 2.5013 -5.1073 -1.4649 16 6 2.0662 -5.5187 0.8178 17 16 2.4804 -7.2211 0.3635 18 6 2.2755 -8.0128 1.9241 19 1 1.9765 -7.4363 2.7871 20 6 2.4993 -9.3774 2.0448 21 7 2.8641 -10.0799 0.9932 22 14 2.2827 -10.2166 3.6995 23 1 1.8715 -9.2128 4.7136 24 1 1.2379 -11.2661 3.5893 25 1 3.5671 -10.8381 4.1112 26 6 1.4968 -2.3975 0.7746 27 1 -0.3632 0.0901 1.0236 28 1 -0.3632 0.8415 -0.5900 29 1 -0.3632 -0.9316 -0.4339 30 1 2.8112 2.8064 -2.3008 31 1 1.6102 3.3244 -3.3554 32 1 2.5932 3.4016 1.5447 33 1 1.7392 4.6198 0.4549 34 1 -0.4525 3.3893 0.7961 35 1 0.4015 2.1711 1.8862 36 1 3.2574 -1.1568 0.2289 37 1 2.7160 -2.1852 -1.9407 38 1 0.9334 -1.9763 -1.6663 39 1 2.7570 -5.1696 1.5853 40 1 1.0470 -5.4827 1.2028 41 1 3.0202 -11.0336 1.0774 42 1 0.4164 -2.2709 0.8433 43 1 1.9582 -2.6169 1.7375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689669383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -28.274468 kcal Electronic energy + Delta-G solvation = -26907.000110 eV Core-core repulsion = 22888.472549 eV Total energy + Delta-G solvation = -4018.527561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54545 -40.45054 -39.14918 -37.73338 -36.48786 -35.18441 -34.13926 -32.45732 -30.55024 -28.26465 -27.50675 -26.17712 -25.98908 -25.44160 -23.32587 -22.93985 -20.99741 -19.55676 -19.13235 -18.35917 -17.83406 -17.66326 -17.27233 -16.69698 -16.39613 -15.98380 -15.66033 -15.29962 -14.88314 -14.82734 -14.58375 -14.40400 -14.07475 -13.82178 -13.55305 -13.33706 -12.98396 -12.91693 -12.73045 -12.56662 -12.49543 -12.19657 -11.84206 -11.73119 -11.32323 -11.24576 -11.09033 -11.04321 -10.78745 -10.69260 -10.25975 -10.20829 -9.84723 -9.52533 -9.16934 -9.10186 -8.72518 -8.27689 -6.54267 -6.24549 -3.95727 1.73451 2.00797 2.15145 2.71955 2.76728 2.99769 3.17827 3.19896 3.24270 3.29237 3.52123 3.79473 3.96487 4.12735 4.16812 4.17435 4.28682 4.39129 4.65718 4.73242 4.81140 4.96382 5.02200 5.05508 5.10840 5.13210 5.19684 5.23524 5.34621 5.43277 5.48084 5.51763 5.59261 5.81626 5.85125 6.01720 6.08968 6.19217 6.71376 6.74986 7.52932 7.57164 7.63922 7.72464 8.32602 8.43763 9.20812 10.82959 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.002003 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010542 B =13976.475155 C =14440.092061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.594 5.594 3 C 0.559 3.441 4 O -0.522 6.522 5 C -0.201 4.201 6 C 0.566 3.434 7 N -0.844 5.844 8 O -0.530 6.530 9 C -0.125 4.125 10 C -0.131 4.131 11 C 0.107 3.893 12 C 0.092 3.908 13 N -0.648 5.648 14 C 0.567 3.433 15 O -0.509 6.509 16 C -0.144 4.144 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.920 3.080 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.092 3.908 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.408 0.592 31 H 0.407 0.593 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.089 0.911 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 30.658 -0.499 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.326 5.326 3 C 0.345 3.655 4 O -0.397 6.397 5 C -0.207 4.207 6 C 0.349 3.651 7 N -0.408 5.408 8 O -0.406 6.406 9 C -0.162 4.162 10 C -0.168 4.168 11 C 0.002 3.998 12 C -0.033 4.033 13 N -0.388 5.388 14 C 0.356 3.644 15 O -0.382 6.382 16 C -0.295 4.295 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.033 4.033 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.238 0.762 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.531 29.548 -2.122 29.969 hybrid contribution -0.311 -0.081 1.903 1.930 sum -4.842 29.468 -0.219 29.864 Atomic orbital electron populations 1.22053 0.78407 1.04365 1.02939 1.47640 1.07462 1.04955 1.72559 1.19132 0.86877 0.83381 0.76097 1.90751 1.13494 1.86802 1.48624 1.21416 1.09102 0.97424 0.92788 1.18936 0.85483 0.76010 0.84678 1.43784 1.12046 1.69878 1.15057 1.90780 1.17022 1.50669 1.82133 1.23117 0.99370 0.95052 0.98702 1.23183 0.95431 1.02377 0.95832 1.23119 0.98684 0.80684 0.97281 1.23330 1.02537 0.82544 0.94855 1.49344 1.70256 1.05985 1.13211 1.19945 0.75446 0.78486 0.90490 1.90732 1.45831 1.71818 1.29802 1.23476 1.05146 1.02833 0.98000 1.85430 1.89471 0.92721 1.15694 1.22886 1.54042 0.95971 0.95380 0.90838 1.25008 0.94517 0.96280 0.97830 1.70030 1.43442 1.07748 1.29001 0.86096 0.78030 0.79179 0.82067 1.19610 1.20539 1.20530 1.23426 1.00371 0.85649 0.93856 0.91510 0.89853 0.90170 0.76274 0.76173 0.86772 0.87258 0.86443 0.87108 0.84363 0.89781 0.89859 0.89135 0.89214 0.92190 0.89266 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 8.27 59.85 0.49 0.88 16 2 N -0.59 -4.63 3.11 -173.56 -0.54 -5.17 16 3 C 0.56 4.85 6.83 -10.99 -0.08 4.78 16 4 O -0.52 -6.03 16.50 5.56 0.09 -5.93 16 5 C -0.20 -1.35 1.17 -156.81 -0.18 -1.54 16 6 C 0.57 4.36 6.76 -10.99 -0.07 4.29 16 7 N -0.84 -4.45 8.87 31.22 0.28 -4.17 16 8 O -0.53 -5.62 16.72 5.56 0.09 -5.52 16 9 C -0.12 -0.63 9.86 -26.73 -0.26 -0.89 16 10 C -0.13 -0.64 8.59 -26.73 -0.23 -0.87 16 11 C 0.11 0.99 4.59 -67.67 -0.31 0.68 16 12 C 0.09 1.02 8.16 -8.51 -0.07 0.95 16 13 N -0.65 -9.13 3.69 -185.06 -0.68 -9.81 16 14 C 0.57 10.95 8.10 -10.99 -0.09 10.86 16 15 O -0.51 -11.94 16.64 5.55 0.09 -11.85 16 16 C -0.14 -2.94 5.98 36.01 0.22 -2.73 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.09 0.88 7.82 -8.37 -0.07 0.81 16 27 H 0.07 0.28 8.06 -51.93 -0.42 -0.13 16 28 H 0.08 0.55 5.60 -51.93 -0.29 0.26 16 29 H 0.08 0.45 5.97 -51.93 -0.31 0.14 16 30 H 0.41 1.80 8.83 -40.82 -0.36 1.44 16 31 H 0.41 1.57 8.93 -40.82 -0.36 1.21 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.12 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.11 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.14 1.46 7.27 -51.93 -0.38 1.08 16 37 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.08 0.81 7.04 -51.93 -0.37 0.45 16 39 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 0.68 6.42 -51.93 -0.33 0.35 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -37.95 380.38 -7.62 -45.57 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.73 Total: -0.27 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.45 Total: 4.34 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.21 Total: -44.51 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.28 Total: -23.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.95 -7.62 -45.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689669383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.295 kcal (2) G-P(sol) polarization free energy of solvation -37.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds