Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00252 * 2 1 4 4 O 1.21277 * 119.99938 * 174.97087 * 3 2 1 5 5 C 1.50694 * 119.99616 * 354.96658 * 3 2 1 6 6 C 1.50697 * 115.55315 * 280.28974 * 5 3 2 7 7 N 1.34781 * 120.00256 * 300.75695 * 6 5 3 8 8 O 1.21279 * 119.99891 * 120.75891 * 6 5 3 9 9 C 1.53007 * 117.49772 * 134.58443 * 5 3 2 10 10 C 1.52999 * 117.49905 * 65.96318 * 5 3 2 11 11 C 1.46499 * 120.00108 * 179.97438 * 2 1 3 12 12 C 1.53498 * 114.20780 * 59.99729 * 11 2 1 13 13 N 1.47064 * 87.98855 * 220.35003 * 12 11 2 14 14 C 1.34772 * 136.05546 * 207.08798 * 13 12 11 15 15 O 1.21285 * 120.00330 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00145 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47624 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00172 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00495 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99496 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47285 * 119.99682 * 22 20 18 25 25 H 1.48503 * 109.46895 * 239.99688 * 22 20 18 26 26 C 1.47068 * 87.88500 * 27.34064 * 13 12 11 27 27 H 1.08992 * 109.46812 * 275.02809 * 1 2 3 28 28 H 1.09004 * 109.46394 * 35.03257 * 1 2 3 29 29 H 1.09001 * 109.46636 * 155.02472 * 1 2 3 30 30 H 0.97005 * 119.99379 * 5.00464 * 7 6 5 31 31 H 0.96997 * 120.00371 * 184.99914 * 7 6 5 32 32 H 1.09004 * 117.49604 * 0.02562 * 9 5 3 33 33 H 1.08995 * 117.50152 * 145.01794 * 9 5 3 34 34 H 1.08995 * 117.50080 * 214.97499 * 10 5 3 35 35 H 1.08998 * 117.49672 * 0.02562 * 10 5 3 36 36 H 1.08996 * 113.41705 * 193.20080 * 11 2 1 37 37 H 1.09008 * 113.46692 * 105.56645 * 12 11 2 38 38 H 1.09003 * 113.46945 * 335.13306 * 12 11 2 39 39 H 1.09004 * 109.47394 * 300.00364 * 16 14 13 40 40 H 1.09003 * 109.46712 * 59.99543 * 16 14 13 41 41 H 0.97004 * 119.99639 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.46095 * 87.43765 * 26 13 12 43 43 H 1.09000 * 113.46897 * 217.87586 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3482 1.1691 0.0921 5 6 1.3898 2.4697 -0.1145 6 6 0.9584 2.8512 -1.5071 7 7 1.8793 3.0088 -2.4785 8 8 -0.2175 3.0165 -1.7537 9 6 1.7886 3.6000 0.8365 10 6 0.4666 2.8578 1.0422 11 6 2.1975 -1.2687 0.0006 12 6 1.9060 -2.1644 -1.2114 13 7 1.9118 -3.3158 -0.2966 14 6 2.1757 -4.6336 -0.3970 15 8 2.5013 -5.1073 -1.4649 16 6 2.0662 -5.5187 0.8178 17 16 2.4804 -7.2211 0.3635 18 6 2.2755 -8.0128 1.9241 19 1 1.9765 -7.4363 2.7871 20 6 2.4993 -9.3774 2.0448 21 7 2.8641 -10.0799 0.9932 22 14 2.2827 -10.2166 3.6995 23 1 1.8715 -9.2128 4.7136 24 1 1.2379 -11.2661 3.5893 25 1 3.5671 -10.8381 4.1112 26 6 1.4968 -2.3975 0.7746 27 1 -0.3632 0.0901 1.0236 28 1 -0.3632 0.8415 -0.5900 29 1 -0.3632 -0.9316 -0.4339 30 1 2.8112 2.8064 -2.3008 31 1 1.6102 3.3244 -3.3554 32 1 2.5932 3.4016 1.5447 33 1 1.7392 4.6198 0.4549 34 1 -0.4525 3.3893 0.7961 35 1 0.4015 2.1711 1.8862 36 1 3.2574 -1.1568 0.2289 37 1 2.7160 -2.1852 -1.9407 38 1 0.9334 -1.9763 -1.6663 39 1 2.7570 -5.1696 1.5853 40 1 1.0470 -5.4827 1.2028 41 1 3.0202 -11.0336 1.0774 42 1 0.4164 -2.2709 0.8433 43 1 1.9582 -2.6169 1.7375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689669383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -58.522548 kcal Electronic energy + Delta-G solvation = -26908.311765 eV Core-core repulsion = 22888.472549 eV Total energy + Delta-G solvation = -4019.839216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26835 -41.33607 -39.99755 -38.98828 -37.02473 -35.97147 -34.67813 -34.59936 -31.98832 -29.43517 -28.09775 -27.70147 -27.00773 -26.61161 -24.02112 -23.40107 -21.83797 -20.40417 -20.14448 -19.59783 -18.93690 -18.34674 -18.14640 -17.87195 -17.15652 -16.90805 -16.86503 -16.57953 -16.30316 -15.91881 -15.72052 -15.29887 -15.11382 -14.86713 -14.45519 -14.28365 -14.03665 -13.90453 -13.84941 -13.66070 -13.27749 -13.17351 -13.08048 -12.91818 -12.61114 -12.56410 -12.24283 -12.17170 -11.74147 -11.72024 -11.27241 -11.17068 -11.10040 -10.84779 -10.77728 -10.31055 -9.92909 -9.81323 -8.70402 -8.36122 -6.15162 1.05062 1.15539 1.36300 1.41062 1.41627 1.44944 1.53985 1.66078 2.06082 2.25599 2.30287 2.70511 2.98362 3.11112 3.16388 3.28209 3.49719 3.68439 3.72660 3.79788 3.84057 3.93843 4.13613 4.24002 4.30956 4.39336 4.46078 4.49226 4.56522 4.63182 4.67987 4.73335 4.81322 4.90296 4.95999 5.12920 5.29986 5.40953 5.74594 6.09054 6.18842 6.22966 6.47863 6.86616 6.99839 7.05192 7.13658 8.73451 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.002003 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010542 B =13976.475155 C =14440.092061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.588 5.588 3 C 0.561 3.439 4 O -0.554 6.554 5 C -0.211 4.211 6 C 0.565 3.435 7 N -0.834 5.834 8 O -0.562 6.562 9 C -0.118 4.118 10 C -0.119 4.119 11 C 0.123 3.877 12 C 0.089 3.911 13 N -0.648 5.648 14 C 0.566 3.434 15 O -0.565 6.565 16 C -0.117 4.117 17 S -0.152 6.152 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.094 3.906 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.413 0.587 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.121 0.879 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 32.577 1.918 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.320 5.320 3 C 0.348 3.652 4 O -0.432 6.432 5 C -0.218 4.218 6 C 0.348 3.652 7 N -0.397 5.397 8 O -0.441 6.441 9 C -0.156 4.156 10 C -0.156 4.156 11 C 0.018 3.982 12 C -0.035 4.035 13 N -0.384 5.384 14 C 0.355 3.645 15 O -0.443 6.443 16 C -0.268 4.268 17 S 0.075 5.925 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.028 4.028 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.243 0.757 31 H 0.246 0.754 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.914 31.548 0.307 32.099 hybrid contribution 0.105 -0.469 1.089 1.191 sum -5.809 31.079 1.396 31.648 Atomic orbital electron populations 1.22232 0.76811 1.04528 1.04497 1.47634 1.08262 1.04066 1.72004 1.19408 0.86505 0.84021 0.75252 1.90740 1.14982 1.87305 1.50132 1.21318 1.10527 0.97010 0.92897 1.19094 0.85193 0.75633 0.85234 1.43755 1.12056 1.68797 1.15092 1.90765 1.18239 1.52422 1.82667 1.23218 0.99513 0.95076 0.97772 1.23285 0.95252 1.02075 0.94969 1.22715 0.98351 0.81330 0.95844 1.23584 1.03295 0.81424 0.95220 1.49176 1.68259 1.04903 1.16099 1.19621 0.75602 0.80059 0.89204 1.90707 1.48784 1.73463 1.31303 1.23256 1.06490 0.98116 0.98936 1.85634 1.90268 0.98951 1.17643 1.23210 1.53967 0.96581 0.95361 0.89766 1.26165 0.93822 0.97059 1.02233 1.70195 1.44666 1.08189 1.31762 0.84873 0.78124 0.78036 0.76709 1.17877 1.19899 1.19989 1.23754 1.02325 0.83596 0.93146 0.89102 0.90369 0.89508 0.75666 0.75395 0.86762 0.86190 0.86273 0.85756 0.85551 0.91076 0.87822 0.87380 0.87154 0.91966 0.86172 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.27 127.77 1.06 1.57 16 2 N -0.59 -7.71 3.11 -821.40 -2.56 -10.27 16 3 C 0.56 8.73 6.83 87.65 0.60 9.33 16 4 O -0.55 -12.20 16.50 -3.02 -0.05 -12.25 16 5 C -0.21 -2.44 1.17 -53.67 -0.06 -2.51 16 6 C 0.57 7.93 6.76 87.66 0.59 8.53 16 7 N -0.83 -7.87 8.87 -173.53 -1.54 -9.41 16 8 O -0.56 -11.25 16.72 -3.02 -0.05 -11.30 16 9 C -0.12 -0.94 9.86 30.60 0.30 -0.63 16 10 C -0.12 -0.86 8.59 30.59 0.26 -0.60 16 11 C 0.12 2.03 4.59 45.55 0.21 2.24 16 12 C 0.09 1.84 8.16 83.18 0.68 2.52 16 13 N -0.65 -17.21 3.69 -857.80 -3.16 -20.38 16 14 C 0.57 21.77 8.10 87.66 0.71 22.48 16 15 O -0.56 -27.36 16.64 -3.05 -0.05 -27.41 16 16 C -0.12 -4.69 5.98 71.24 0.43 -4.27 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.54 -30.88 9.50 67.96 0.65 -30.24 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.67 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 22 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.09 1.50 7.82 83.27 0.65 2.16 16 27 H 0.09 0.38 8.06 -2.39 -0.02 0.36 16 28 H 0.08 0.83 5.60 -2.38 -0.01 0.82 16 29 H 0.09 0.65 5.97 -2.39 -0.01 0.63 16 30 H 0.41 3.22 8.83 -92.70 -0.82 2.41 16 31 H 0.41 2.79 8.93 -92.71 -0.83 1.96 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 0.88 7.89 -2.39 -0.02 0.86 16 35 H 0.12 0.56 8.06 -2.39 -0.02 0.54 16 36 H 0.13 2.51 7.27 -2.39 -0.02 2.49 16 37 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.10 1.78 7.04 -2.39 -0.02 1.76 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 41 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 42 H 0.12 1.27 6.42 -2.39 -0.02 1.26 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -85.55 380.38 -0.29 -85.84 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.57 Total: 13.51 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.54 Total: 11.72 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -6.97 Total: -95.78 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.15 Total: -50.96 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -85.55 -0.29 -85.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689669383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.318 kcal (2) G-P(sol) polarization free energy of solvation -85.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds