Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99919 * 2 1 4 4 O 1.21284 * 119.99975 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00286 * 0.02562 * 3 2 1 6 6 S 1.80995 * 109.47254 * 179.97438 * 5 3 2 7 7 C 1.76204 * 99.99879 * 179.97438 * 6 5 3 8 8 H 1.07993 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.38794 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00301 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47203 * 89.99532 * 11 9 7 13 13 H 1.48501 * 109.47543 * 209.99708 * 11 9 7 14 14 H 1.48498 * 109.47120 * 329.99942 * 11 9 7 15 15 C 1.46503 * 120.00296 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.17135 * 58.09151 * 15 2 1 17 17 N 1.47477 * 87.93193 * 220.33520 * 16 15 2 18 18 C 1.46896 * 111.00022 * 138.70664 * 17 16 15 19 19 H 1.09003 * 109.51984 * 303.37685 * 18 17 16 20 20 C 1.53237 * 109.52748 * 63.50566 * 18 17 16 21 21 C 1.53235 * 108.57244 * 175.51722 * 20 18 17 22 22 C 1.50587 * 109.16331 * 304.38818 * 21 20 18 23 23 O 1.21229 * 119.36230 * 209.06803 * 22 21 20 24 24 N 1.34145 * 121.27812 * 29.08960 * 22 21 20 25 25 C 1.34208 * 122.60648 * 359.52405 * 24 22 21 26 26 O 1.21224 * 119.40905 * 180.48715 * 25 24 22 27 27 C 1.47478 * 87.83999 * 27.00651 * 17 16 15 28 28 H 1.08998 * 109.46767 * 275.17312 * 1 2 3 29 29 H 1.08993 * 109.47290 * 35.17299 * 1 2 3 30 30 H 1.09000 * 109.46765 * 155.17292 * 1 2 3 31 31 H 1.09005 * 109.46510 * 299.99866 * 5 3 2 32 32 H 1.09000 * 109.46958 * 59.99295 * 5 3 2 33 33 H 0.97001 * 120.00138 * 180.02562 * 10 9 7 34 34 H 1.09001 * 113.25660 * 191.04331 * 15 2 1 35 35 H 1.08997 * 113.47337 * 105.56011 * 16 15 2 36 36 H 1.08999 * 113.47355 * 335.10249 * 16 15 2 37 37 H 1.09003 * 109.62135 * 295.24826 * 20 18 17 38 38 H 1.09007 * 109.61897 * 55.61118 * 20 18 17 39 39 H 1.08999 * 109.51891 * 64.29163 * 21 20 18 40 40 H 1.08997 * 109.52751 * 184.41600 * 21 20 18 41 41 H 0.96998 * 118.70583 * 179.45021 * 24 22 21 42 42 H 1.09006 * 113.46931 * 87.75470 * 27 17 16 43 43 H 1.08998 * 113.47903 * 218.22011 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3763 5.0305 0.0002 9 6 1.9282 6.5080 0.0019 10 7 1.0915 7.5242 0.0013 11 14 3.7707 6.8155 0.0026 12 1 4.2594 6.8977 -1.3973 13 1 4.0593 8.0926 0.7034 14 1 4.4583 5.7006 0.7022 15 6 2.1976 -1.2687 -0.0006 16 6 1.8708 -2.1827 -1.1899 17 7 1.9039 -3.3224 -0.2545 18 6 0.8130 -4.2653 -0.5347 19 1 -0.1419 -3.7416 -0.4889 20 6 1.0012 -4.8658 -1.9319 21 6 -0.0815 -5.9265 -2.1571 22 6 -0.0155 -6.9435 -1.0486 23 8 -0.3634 -8.0841 -1.2668 24 7 0.4205 -6.6118 0.1759 25 6 0.8295 -5.3719 0.4866 26 8 1.2209 -5.1381 1.6099 27 6 1.5275 -2.3818 0.8172 28 1 -0.3633 0.0927 1.0235 29 1 -0.3633 0.8400 -0.5919 30 1 -0.3633 -0.9327 -0.4315 31 1 0.7585 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 1.4316 8.4326 0.0016 34 1 3.2640 -1.1500 0.1913 35 1 2.6590 -2.2151 -1.9420 36 1 0.8853 -2.0015 -1.6188 37 1 0.9073 -4.0816 -2.6831 38 1 1.9874 -5.3247 -2.0032 39 1 -1.0625 -5.4512 -2.1574 40 1 0.0848 -6.4192 -3.1151 41 1 0.4400 -7.2947 0.8644 42 1 0.4502 -2.2537 0.9238 43 1 2.0247 -2.5830 1.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716735896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = -53.842864 kcal Electronic energy + Delta-G solvation = -27040.551646 eV Core-core repulsion = 23020.915356 eV Total energy + Delta-G solvation = -4019.636289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26688 -40.87885 -39.38522 -38.72074 -36.13667 -35.14117 -33.94663 -32.46975 -30.63532 -29.10521 -27.28826 -26.60168 -25.79117 -25.51655 -24.14544 -23.27843 -20.74367 -20.05387 -19.10619 -18.26674 -17.89229 -17.72444 -17.25720 -16.88859 -16.37741 -16.03216 -15.75149 -15.32060 -15.11520 -15.04734 -14.77733 -14.60732 -14.21506 -13.81372 -13.53965 -13.35236 -13.25748 -13.09038 -12.91409 -12.82253 -12.54809 -12.42739 -12.20121 -11.96791 -11.43741 -11.28507 -11.21738 -11.03246 -10.88622 -10.76973 -10.66076 -10.60355 -9.89811 -9.69293 -9.44674 -9.03334 -8.73228 -8.53277 -6.95920 -6.31976 -4.04217 0.95214 2.07859 2.21869 2.57586 2.79223 3.02770 3.24575 3.30915 3.47520 3.48867 3.59835 3.72790 3.89979 4.10264 4.22717 4.30158 4.32184 4.34647 4.52358 4.60556 4.71808 4.82215 4.85234 4.95759 5.00702 5.05675 5.07214 5.23135 5.26161 5.34570 5.36845 5.48613 5.51627 5.67733 5.70896 5.79123 5.94504 6.16941 6.31933 6.46708 6.80963 7.27123 7.29364 7.90872 8.31954 8.37987 9.14189 10.77099 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.001960 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.778367 B =14282.829965 C =14415.632909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.535 3.465 4 O -0.512 6.512 5 C -0.121 4.121 6 S -0.142 6.142 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.125 3.875 16 C -0.016 4.016 17 N -0.448 5.448 18 C 0.030 3.970 19 H 0.094 0.906 20 C -0.120 4.120 21 C -0.141 4.141 22 C 0.525 3.475 23 O -0.504 6.504 24 N -0.675 5.675 25 C 0.532 3.468 26 O -0.479 6.479 27 C -0.005 4.005 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.271 0.729 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.414 0.586 42 H 0.077 0.923 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -27.337 -4.319 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C 0.323 3.677 4 O -0.386 6.386 5 C -0.272 4.272 6 S 0.084 5.916 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.516 5.516 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.020 3.980 16 C -0.146 4.146 17 N -0.171 5.171 18 C -0.082 4.082 19 H 0.111 0.889 20 C -0.158 4.158 21 C -0.181 4.181 22 C 0.314 3.686 23 O -0.377 6.377 24 N -0.341 5.341 25 C 0.319 3.681 26 O -0.349 6.349 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.253 0.747 42 H 0.095 0.905 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.190 -27.873 -3.928 28.329 hybrid contribution -1.795 0.410 0.235 1.856 sum -4.985 -27.463 -3.693 28.155 Atomic orbital electron populations 1.21791 0.79643 1.02873 1.02397 1.47765 1.06640 1.05115 1.75297 1.20357 0.87951 0.84537 0.74871 1.90705 1.13694 1.86740 1.47462 1.23319 1.03131 0.95052 1.05658 1.84825 1.11863 0.97508 1.97417 1.22293 0.94828 0.90876 1.58896 0.89390 1.24714 0.98564 0.94885 0.93156 1.69936 1.34814 0.98894 1.47973 0.86736 0.85315 0.79868 0.79941 1.19199 1.19934 1.15902 1.22593 0.99237 0.81352 0.94849 1.24476 1.02758 0.89564 0.97774 1.68919 1.34507 1.07724 1.05938 1.22399 0.97271 0.94306 0.94249 0.88863 1.21818 1.00176 0.98867 0.94937 1.21940 1.02244 0.95898 0.98025 1.21017 0.74556 0.89779 0.83288 1.90811 1.44104 1.21041 1.81721 1.44877 1.60790 1.13694 1.14722 1.20627 0.75221 0.82894 0.89348 1.90801 1.40830 1.81435 1.21797 1.24403 1.00500 0.90437 0.98120 0.92153 0.90268 0.91617 0.88470 0.88417 0.91919 0.84661 0.88225 0.90351 0.88328 0.89051 0.86882 0.86185 0.74670 0.90502 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 8.91 59.85 0.53 1.14 16 2 N -0.61 -7.16 3.11 -173.62 -0.54 -7.70 16 3 C 0.53 8.94 7.69 -10.99 -0.08 8.86 16 4 O -0.51 -10.50 15.36 5.55 0.09 -10.42 16 5 C -0.12 -2.22 4.78 36.00 0.17 -2.04 16 6 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 7 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 8 H 0.09 2.57 8.03 -52.49 -0.42 2.14 16 9 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 10 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 11 Si 0.86 21.43 27.74 -169.99 -4.71 16.71 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 15 C 0.13 1.27 4.56 -67.71 -0.31 0.97 16 16 C -0.02 -0.11 6.16 -7.54 -0.05 -0.16 16 17 N -0.45 -3.40 5.98 -237.91 -1.42 -4.82 16 18 C 0.03 0.16 1.80 -68.80 -0.12 0.03 16 19 H 0.09 0.33 7.56 -51.93 -0.39 -0.07 16 20 C -0.12 -0.36 5.24 -26.49 -0.14 -0.50 16 21 C -0.14 -0.36 6.07 -27.82 -0.17 -0.52 16 22 C 0.52 3.15 7.74 -11.32 -0.09 3.06 16 23 O -0.50 -4.87 17.88 5.60 0.10 -4.77 16 24 N -0.67 -4.13 5.10 -11.74 -0.06 -4.19 16 25 C 0.53 3.95 7.56 -11.29 -0.09 3.86 16 26 O -0.48 -5.28 16.49 5.61 0.09 -5.19 16 27 C -0.01 -0.04 6.04 -7.54 -0.05 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.65 6.66 -51.93 -0.35 0.30 16 30 H 0.07 0.34 5.98 -51.93 -0.31 0.03 16 31 H 0.10 1.63 7.41 -51.91 -0.38 1.24 16 32 H 0.10 1.68 8.11 -51.92 -0.42 1.26 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.14 1.70 7.26 -51.93 -0.38 1.33 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.41 6.57 -51.93 -0.34 0.07 16 37 H 0.10 0.17 7.43 -51.93 -0.39 -0.22 16 38 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 39 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.41 2.39 8.79 -40.82 -0.36 2.03 16 42 H 0.08 0.55 6.00 -51.93 -0.31 0.23 16 43 H 0.10 1.04 8.12 -51.93 -0.42 0.61 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -36.79 364.14 -8.10 -44.89 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.74 Total: -2.12 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.17 Total: 2.92 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -1.25 Total: -42.02 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.28 Total: -20.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.79 -8.10 -44.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.950 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds