Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99919 * 2 1 4 4 O 1.21284 * 119.99975 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00286 * 0.02562 * 3 2 1 6 6 S 1.80995 * 109.47254 * 179.97438 * 5 3 2 7 7 C 1.76204 * 99.99879 * 179.97438 * 6 5 3 8 8 H 1.07993 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.38794 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00301 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47203 * 89.99532 * 11 9 7 13 13 H 1.48501 * 109.47543 * 209.99708 * 11 9 7 14 14 H 1.48498 * 109.47120 * 329.99942 * 11 9 7 15 15 C 1.46503 * 120.00296 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.17135 * 58.09151 * 15 2 1 17 17 N 1.47477 * 87.93193 * 220.33520 * 16 15 2 18 18 C 1.46896 * 111.00022 * 138.70664 * 17 16 15 19 19 H 1.09003 * 109.51984 * 303.37685 * 18 17 16 20 20 C 1.53237 * 109.52748 * 63.50566 * 18 17 16 21 21 C 1.53235 * 108.57244 * 175.51722 * 20 18 17 22 22 C 1.50587 * 109.16331 * 304.38818 * 21 20 18 23 23 O 1.21229 * 119.36230 * 209.06803 * 22 21 20 24 24 N 1.34145 * 121.27812 * 29.08960 * 22 21 20 25 25 C 1.34208 * 122.60648 * 359.52405 * 24 22 21 26 26 O 1.21224 * 119.40905 * 180.48715 * 25 24 22 27 27 C 1.47478 * 87.83999 * 27.00651 * 17 16 15 28 28 H 1.08998 * 109.46767 * 275.17312 * 1 2 3 29 29 H 1.08993 * 109.47290 * 35.17299 * 1 2 3 30 30 H 1.09000 * 109.46765 * 155.17292 * 1 2 3 31 31 H 1.09005 * 109.46510 * 299.99866 * 5 3 2 32 32 H 1.09000 * 109.46958 * 59.99295 * 5 3 2 33 33 H 0.97001 * 120.00138 * 180.02562 * 10 9 7 34 34 H 1.09001 * 113.25660 * 191.04331 * 15 2 1 35 35 H 1.08997 * 113.47337 * 105.56011 * 16 15 2 36 36 H 1.08999 * 113.47355 * 335.10249 * 16 15 2 37 37 H 1.09003 * 109.62135 * 295.24826 * 20 18 17 38 38 H 1.09007 * 109.61897 * 55.61118 * 20 18 17 39 39 H 1.08999 * 109.51891 * 64.29163 * 21 20 18 40 40 H 1.08997 * 109.52751 * 184.41600 * 21 20 18 41 41 H 0.96998 * 118.70583 * 179.45021 * 24 22 21 42 42 H 1.09006 * 113.46931 * 87.75470 * 27 17 16 43 43 H 1.08998 * 113.47903 * 218.22011 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3763 5.0305 0.0002 9 6 1.9282 6.5080 0.0019 10 7 1.0915 7.5242 0.0013 11 14 3.7707 6.8155 0.0026 12 1 4.2594 6.8977 -1.3973 13 1 4.0593 8.0926 0.7034 14 1 4.4583 5.7006 0.7022 15 6 2.1976 -1.2687 -0.0006 16 6 1.8708 -2.1827 -1.1899 17 7 1.9039 -3.3224 -0.2545 18 6 0.8130 -4.2653 -0.5347 19 1 -0.1419 -3.7416 -0.4889 20 6 1.0012 -4.8658 -1.9319 21 6 -0.0815 -5.9265 -2.1571 22 6 -0.0155 -6.9435 -1.0486 23 8 -0.3634 -8.0841 -1.2668 24 7 0.4205 -6.6118 0.1759 25 6 0.8295 -5.3719 0.4866 26 8 1.2209 -5.1381 1.6099 27 6 1.5275 -2.3818 0.8172 28 1 -0.3633 0.0927 1.0235 29 1 -0.3633 0.8400 -0.5919 30 1 -0.3633 -0.9327 -0.4315 31 1 0.7585 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 1.4316 8.4326 0.0016 34 1 3.2640 -1.1500 0.1913 35 1 2.6590 -2.2151 -1.9420 36 1 0.8853 -2.0015 -1.6188 37 1 0.9073 -4.0816 -2.6831 38 1 1.9874 -5.3247 -2.0032 39 1 -1.0625 -5.4512 -2.1574 40 1 0.0848 -6.4192 -3.1151 41 1 0.4400 -7.2947 0.8644 42 1 0.4502 -2.2537 0.9238 43 1 2.0247 -2.5830 1.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716735896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = -85.127303 kcal Electronic energy + Delta-G solvation = -27041.908241 eV Core-core repulsion = 23020.915356 eV Total energy + Delta-G solvation = -4020.992885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.80448 -41.61242 -40.23412 -39.60409 -36.73832 -36.03864 -34.65316 -34.45391 -31.50349 -30.08955 -28.01288 -27.84526 -27.18285 -26.34780 -24.54852 -23.81719 -21.71556 -20.52348 -20.01506 -19.56851 -18.79655 -18.51527 -18.13883 -17.63591 -17.18917 -17.02788 -16.93538 -16.54475 -16.08669 -15.83946 -15.57854 -15.49326 -15.14917 -14.90355 -14.79733 -14.25399 -14.17473 -13.89390 -13.74936 -13.51946 -13.38000 -13.34236 -13.16333 -13.01146 -12.91831 -12.65797 -12.30386 -12.09190 -11.86595 -11.78167 -11.38315 -11.34212 -11.23783 -11.15388 -10.95349 -10.49560 -10.05210 -9.67347 -8.97956 -8.49890 -6.20296 0.43378 0.99672 1.32422 1.46457 1.51689 1.53240 1.63008 1.76311 2.03757 2.26300 2.69473 2.78773 2.88510 3.00366 3.32831 3.50139 3.53601 3.65784 3.71879 3.95750 4.01035 4.11810 4.17961 4.23608 4.32163 4.38252 4.46355 4.63583 4.71491 4.73592 4.78090 4.86193 4.94296 4.96463 5.00222 5.04751 5.17015 5.48092 5.71025 5.72590 5.87945 6.13364 6.23275 6.33132 6.76155 6.95761 7.09626 8.62148 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.001960 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.778367 B =14282.829965 C =14415.632909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C 0.534 3.466 4 O -0.561 6.561 5 C -0.104 4.104 6 S -0.182 6.182 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.046 3.954 10 N -0.916 5.916 11 Si 0.912 3.088 12 H -0.262 1.262 13 H -0.261 1.261 14 H -0.238 1.238 15 C 0.108 3.892 16 C 0.003 3.997 17 N -0.464 5.464 18 C 0.030 3.970 19 H 0.126 0.874 20 C -0.112 4.112 21 C -0.131 4.131 22 C 0.526 3.474 23 O -0.545 6.545 24 N -0.674 5.674 25 C 0.535 3.465 26 O -0.523 6.523 27 C 0.005 3.995 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.276 0.724 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.411 0.589 42 H 0.100 0.900 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -28.691 -5.982 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.329 5.329 3 C 0.322 3.678 4 O -0.440 6.440 5 C -0.255 4.255 6 S 0.045 5.955 7 C -0.673 4.673 8 H 0.083 0.917 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.735 3.265 12 H -0.186 1.186 13 H -0.186 1.186 14 H -0.162 1.162 15 C 0.003 3.997 16 C -0.126 4.126 17 N -0.187 5.187 18 C -0.082 4.082 19 H 0.144 0.856 20 C -0.150 4.150 21 C -0.170 4.170 22 C 0.318 3.682 23 O -0.421 6.421 24 N -0.338 5.338 25 C 0.323 3.677 26 O -0.396 6.396 27 C -0.124 4.124 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.250 0.750 42 H 0.118 0.882 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.595 -29.265 -5.607 30.149 hybrid contribution -1.494 0.630 0.792 1.804 sum -6.089 -28.635 -4.815 29.668 Atomic orbital electron populations 1.22164 0.76844 1.05292 1.03542 1.47700 1.08242 1.03969 1.72988 1.20064 0.87246 0.85354 0.75133 1.90690 1.15541 1.87412 1.50317 1.23287 1.01667 0.93305 1.07261 1.84792 1.13997 0.99164 1.97571 1.22437 0.94422 0.92375 1.58034 0.91710 1.25537 1.02549 0.94879 0.93023 1.70011 1.36666 0.99495 1.49230 0.85891 0.80474 0.79963 0.80199 1.18644 1.18554 1.16229 1.22656 0.97755 0.81082 0.98167 1.24406 1.04503 0.87450 0.96273 1.68875 1.36120 1.08096 1.05653 1.22582 0.97870 0.93200 0.94572 0.85641 1.21825 0.99794 0.99472 0.93880 1.22031 1.03581 0.94692 0.96712 1.21778 0.72994 0.89924 0.83546 1.90802 1.46048 1.23020 1.82222 1.44954 1.60272 1.13479 1.15099 1.21135 0.73924 0.83416 0.89196 1.90794 1.42939 1.82115 1.23734 1.24304 1.01264 0.89658 0.97203 0.91296 0.90022 0.87532 0.86498 0.87123 0.91427 0.87995 0.88072 0.87054 0.85640 0.90167 0.83907 0.84832 0.75047 0.88217 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 8.91 127.77 1.14 1.88 16 2 N -0.60 -12.51 3.11 -821.59 -2.56 -15.06 16 3 C 0.53 17.35 7.69 87.66 0.67 18.03 16 4 O -0.56 -23.27 15.36 -3.04 -0.05 -23.32 16 5 C -0.10 -3.70 4.78 71.24 0.34 -3.36 16 6 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 7 C -0.53 -29.78 10.04 67.95 0.68 -29.10 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 C 0.05 2.63 5.50 84.86 0.47 3.10 16 10 N -0.92 -54.83 13.97 21.65 0.30 -54.52 16 11 Si 0.91 44.45 27.74 68.60 1.90 46.35 16 12 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 15 C 0.11 2.02 4.56 45.45 0.21 2.23 16 16 C 0.00 0.03 6.16 83.58 0.51 0.54 16 17 N -0.46 -5.78 5.98 -906.63 -5.42 -11.20 16 18 C 0.03 0.20 1.80 44.21 0.08 0.28 16 19 H 0.13 0.11 7.56 -2.39 -0.02 0.09 16 20 C -0.11 -0.18 5.24 30.75 0.16 -0.02 16 21 C -0.13 -0.10 6.07 29.89 0.18 0.08 16 22 C 0.53 5.24 7.74 87.72 0.68 5.92 16 23 O -0.55 -9.98 17.88 -2.87 -0.05 -10.03 16 24 N -0.67 -7.42 5.10 -428.54 -2.18 -9.61 16 25 C 0.53 6.99 7.56 87.71 0.66 7.65 16 26 O -0.52 -11.30 16.49 -2.86 -0.05 -11.34 16 27 C 0.01 0.08 6.04 83.58 0.50 0.58 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.99 6.66 -2.39 -0.02 0.98 16 30 H 0.11 0.42 5.98 -2.39 -0.01 0.41 16 31 H 0.12 3.68 7.41 -2.39 -0.02 3.66 16 32 H 0.11 3.64 8.11 -2.40 -0.02 3.62 16 33 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.10 2.64 7.26 -2.39 -0.02 2.62 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 0.43 6.57 -2.39 -0.02 0.42 16 37 H 0.13 -0.36 7.43 -2.39 -0.02 -0.38 16 38 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.14 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.41 4.72 8.79 -92.71 -0.81 3.91 16 42 H 0.10 1.01 6.00 -2.38 -0.01 0.99 16 43 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 Total: -1.00 -84.64 364.14 -2.65 -87.29 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 0.21 Total: 3.65 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.29 Total: 7.81 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -9.86 Total: -90.40 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.15 Total: -44.69 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -84.64 -2.65 -87.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.164 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds