Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34780 * 120.00325 * 2 1 4 4 O 1.21276 * 120.00568 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99577 * 359.97438 * 3 2 1 6 6 S 1.81005 * 109.47215 * 180.02562 * 5 3 2 7 7 C 1.76198 * 100.00007 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00048 * 0.02562 * 7 6 5 9 9 C 1.38804 * 119.99922 * 179.97438 * 7 6 5 10 10 N 1.31632 * 119.99680 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47385 * 90.00395 * 11 9 7 13 13 H 1.48503 * 109.46792 * 210.00283 * 11 9 7 14 14 H 1.48504 * 109.47183 * 329.99492 * 11 9 7 15 15 C 1.46502 * 120.00474 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.16857 * 300.00434 * 15 2 1 17 17 N 1.47469 * 87.93481 * 87.61622 * 16 15 2 18 18 C 1.46900 * 111.00230 * 138.70644 * 17 16 15 19 19 H 1.09005 * 109.57270 * 300.16067 * 18 17 16 20 20 C 1.53239 * 109.52814 * 180.02562 * 18 17 16 21 21 C 1.53246 * 108.56811 * 184.47906 * 20 18 17 22 22 C 1.50587 * 109.16310 * 55.61270 * 21 20 18 23 23 O 1.21220 * 119.36146 * 150.90624 * 22 21 20 24 24 N 1.34142 * 121.27635 * 330.92718 * 22 21 20 25 25 C 1.34143 * 122.59284 * 0.52408 * 24 22 21 26 26 O 1.21221 * 119.36021 * 179.45577 * 25 24 22 27 27 C 1.47480 * 87.83644 * 27.01135 * 17 16 15 28 28 H 1.09005 * 109.46998 * 270.00192 * 1 2 3 29 29 H 1.09001 * 109.46971 * 29.99808 * 1 2 3 30 30 H 1.08999 * 109.46989 * 150.00464 * 1 2 3 31 31 H 1.09001 * 109.47774 * 300.00133 * 5 3 2 32 32 H 1.08999 * 109.46972 * 60.00168 * 5 3 2 33 33 H 0.97004 * 119.99724 * 179.97438 * 10 9 7 34 34 H 1.08995 * 113.38810 * 166.91829 * 15 2 1 35 35 H 1.09003 * 113.47383 * 332.84944 * 16 15 2 36 36 H 1.08995 * 113.53328 * 202.39778 * 16 15 2 37 37 H 1.08998 * 109.62559 * 64.75256 * 20 18 17 38 38 H 1.08999 * 109.61493 * 304.20185 * 20 18 17 39 39 H 1.09005 * 109.52155 * 175.51393 * 21 20 18 40 40 H 1.09002 * 109.52213 * 295.64307 * 21 20 18 41 41 H 0.97002 * 118.70132 * 180.54955 * 24 22 21 42 42 H 1.08999 * 113.47639 * 87.75860 * 27 17 16 43 43 H 1.09003 * 113.47185 * 218.21890 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4415 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0024 9 6 1.9282 6.5081 -0.0028 10 7 3.2266 6.7247 -0.0026 11 14 0.7407 7.9500 -0.0036 12 1 0.4257 8.3326 1.3962 13 1 1.3622 9.1027 -0.7039 14 1 -0.5097 7.5612 -0.7040 15 6 2.1976 -1.2687 -0.0006 16 6 1.9053 -2.1638 1.2119 17 7 0.7724 -2.7280 0.4551 18 6 0.6877 -4.1828 0.6405 19 1 1.6093 -4.6495 0.2925 20 6 -0.4980 -4.7329 -0.1593 21 6 -0.6344 -6.2301 0.1377 22 6 -0.7642 -6.4292 1.6247 23 8 -1.3855 -7.3815 2.0448 24 7 -0.2060 -5.5729 2.4934 25 6 0.4857 -4.4929 2.1001 26 8 0.9572 -3.7523 2.9360 27 6 1.5044 -2.3943 -0.7810 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7590 2.5299 -0.8908 32 1 0.7584 2.5302 0.8892 33 1 3.5667 7.6331 -0.0031 34 1 3.2578 -1.1560 -0.2269 35 1 1.6012 -1.6078 2.0988 36 1 2.6934 -2.8879 1.4183 37 1 -0.3208 -4.5858 -1.2247 38 1 -1.4107 -4.2162 0.1374 39 1 -1.5213 -6.6211 -0.3609 40 1 0.2490 -6.7554 -0.2253 41 1 -0.3062 -5.7415 3.4434 42 1 2.1859 -3.1799 -1.1075 43 1 0.8604 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716735897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = -49.153854 kcal Electronic energy + Delta-G solvation = -27220.892297 eV Core-core repulsion = 23201.459338 eV Total energy + Delta-G solvation = -4019.432959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27633 -40.80851 -39.33232 -38.47309 -36.12387 -34.91489 -33.79048 -32.41608 -30.52256 -28.84806 -27.14170 -26.46541 -25.57759 -25.28788 -24.19824 -23.21297 -20.94948 -19.87738 -18.68691 -18.21859 -17.85183 -17.63055 -17.10001 -16.85784 -16.24005 -15.66638 -15.58170 -15.44647 -15.22234 -14.99843 -14.79382 -14.36463 -13.97568 -13.69036 -13.47776 -13.40538 -13.12200 -12.99464 -12.57366 -12.45599 -12.43566 -12.06808 -11.98026 -11.81639 -11.42800 -11.13959 -11.05147 -11.00998 -10.86303 -10.75402 -10.74143 -10.46411 -9.79658 -9.52813 -9.28524 -9.05387 -8.48379 -8.21328 -6.48781 -6.20529 -3.90879 0.96419 2.13029 2.24197 2.87367 3.00755 3.23318 3.23554 3.26732 3.30978 3.45407 3.61630 3.82464 3.95628 4.17407 4.21567 4.30506 4.39504 4.48150 4.61103 4.87467 4.94690 4.98136 5.05152 5.11025 5.14606 5.25486 5.31461 5.34996 5.42852 5.56397 5.61622 5.62887 5.74852 5.91048 5.92355 5.95086 6.16532 6.22429 6.43383 6.68227 6.83090 7.28520 7.55976 7.61065 8.36483 8.55182 9.24825 10.86874 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.002018 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.525543 B =13871.979571 C =14083.586900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.536 3.464 4 O -0.516 6.516 5 C -0.148 4.148 6 S -0.062 6.062 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.119 3.881 16 C 0.004 3.996 17 N -0.453 5.453 18 C 0.026 3.974 19 H 0.095 0.905 20 C -0.113 4.113 21 C -0.142 4.142 22 C 0.525 3.475 23 O -0.505 6.505 24 N -0.674 5.674 25 C 0.528 3.472 26 O -0.480 6.480 27 C -0.012 4.012 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.413 0.587 42 H 0.084 0.916 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 -27.937 -2.441 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.334 5.334 3 C 0.324 3.676 4 O -0.391 6.391 5 C -0.299 4.299 6 S 0.164 5.836 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.012 3.988 16 C -0.126 4.126 17 N -0.177 5.177 18 C -0.086 4.086 19 H 0.112 0.888 20 C -0.150 4.150 21 C -0.182 4.182 22 C 0.314 3.686 23 O -0.377 6.377 24 N -0.340 5.340 25 C 0.315 3.685 26 O -0.350 6.350 27 C -0.141 4.141 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.253 0.747 42 H 0.102 0.898 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.188 -27.629 -1.881 28.611 hybrid contribution -1.565 0.290 0.478 1.662 sum -8.753 -27.339 -1.403 28.740 Atomic orbital electron populations 1.21761 0.78974 1.02894 1.02100 1.47431 1.06961 1.04111 1.74927 1.20378 0.87902 0.84460 0.74829 1.90688 1.13787 1.86786 1.47790 1.23546 1.04505 0.96979 1.04827 1.85385 1.08104 0.93374 1.96709 1.22856 0.94312 0.92188 1.58867 0.90931 1.24995 0.95675 0.98383 0.94576 1.70022 1.11726 1.21630 1.46909 0.86168 0.80267 0.80715 0.78351 1.20281 1.20779 1.19693 1.21980 0.97861 0.83391 0.95520 1.24260 0.91929 0.97245 0.99136 1.69167 1.35943 1.06619 1.05949 1.22451 1.01072 0.94074 0.91002 0.88751 1.21708 0.98416 0.92991 1.01934 1.21961 1.06972 0.98668 0.90620 1.21039 0.76605 0.80918 0.90086 1.90807 1.37964 1.28805 1.80168 1.44874 1.50708 1.25520 1.12894 1.20751 0.76314 0.79323 0.92114 1.90834 1.44666 1.45428 1.54090 1.24407 0.96989 0.97899 0.94815 0.92833 0.91273 0.90253 0.89171 0.89189 0.92210 0.86472 0.88356 0.90271 0.88449 0.89218 0.86314 0.86981 0.74685 0.89768 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 9.33 59.84 0.56 1.48 16 2 N -0.60 -8.17 3.11 -173.62 -0.54 -8.71 16 3 C 0.54 10.00 7.69 -10.98 -0.08 9.92 16 4 O -0.52 -11.53 15.37 5.56 0.09 -11.44 16 5 C -0.15 -2.99 4.71 36.01 0.17 -2.82 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 11 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.12 1.31 4.66 -67.71 -0.32 0.99 16 16 C 0.00 0.04 5.20 -7.56 -0.04 0.00 16 17 N -0.45 -3.39 4.70 -237.95 -1.12 -4.51 16 18 C 0.03 0.14 1.85 -68.80 -0.13 0.01 16 19 H 0.10 0.32 7.53 -51.93 -0.39 -0.07 16 20 C -0.11 -0.32 5.56 -26.48 -0.15 -0.47 16 21 C -0.14 -0.36 6.07 -27.81 -0.17 -0.53 16 22 C 0.52 3.24 7.74 -11.32 -0.09 3.15 16 23 O -0.50 -4.98 17.87 5.61 0.10 -4.88 16 24 N -0.67 -4.30 5.09 -11.75 -0.06 -4.36 16 25 C 0.53 4.00 7.53 -11.32 -0.09 3.91 16 26 O -0.48 -5.41 14.88 5.61 0.08 -5.32 16 27 C -0.01 -0.08 6.58 -7.56 -0.05 -0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 30 H 0.08 0.68 5.68 -51.93 -0.29 0.39 16 31 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 32 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.12 1.45 7.29 -51.93 -0.38 1.07 16 35 H 0.10 1.27 7.75 -51.93 -0.40 0.87 16 36 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 37 H 0.10 0.14 8.13 -51.93 -0.42 -0.29 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 41 H 0.41 2.56 8.79 -40.82 -0.36 2.20 16 42 H 0.08 0.37 7.55 -51.93 -0.39 -0.02 16 43 H 0.10 0.63 7.25 -51.93 -0.38 0.25 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -37.41 365.92 -8.41 -45.82 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.79 Total: -1.78 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.18 Total: 2.62 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.99 Total: -42.99 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.27 Total: -21.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.41 -8.41 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.334 kcal (2) G-P(sol) polarization free energy of solvation -37.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds