Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34780 * 120.00325 * 2 1 4 4 O 1.21276 * 120.00568 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99577 * 359.97438 * 3 2 1 6 6 S 1.81005 * 109.47215 * 180.02562 * 5 3 2 7 7 C 1.76198 * 100.00007 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00048 * 0.02562 * 7 6 5 9 9 C 1.38804 * 119.99922 * 179.97438 * 7 6 5 10 10 N 1.31632 * 119.99680 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99909 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47385 * 90.00395 * 11 9 7 13 13 H 1.48503 * 109.46792 * 210.00283 * 11 9 7 14 14 H 1.48504 * 109.47183 * 329.99492 * 11 9 7 15 15 C 1.46502 * 120.00474 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.16857 * 300.00434 * 15 2 1 17 17 N 1.47469 * 87.93481 * 87.61622 * 16 15 2 18 18 C 1.46900 * 111.00230 * 138.70644 * 17 16 15 19 19 H 1.09005 * 109.57270 * 300.16067 * 18 17 16 20 20 C 1.53239 * 109.52814 * 180.02562 * 18 17 16 21 21 C 1.53246 * 108.56811 * 184.47906 * 20 18 17 22 22 C 1.50587 * 109.16310 * 55.61270 * 21 20 18 23 23 O 1.21220 * 119.36146 * 150.90624 * 22 21 20 24 24 N 1.34142 * 121.27635 * 330.92718 * 22 21 20 25 25 C 1.34143 * 122.59284 * 0.52408 * 24 22 21 26 26 O 1.21221 * 119.36021 * 179.45577 * 25 24 22 27 27 C 1.47480 * 87.83644 * 27.01135 * 17 16 15 28 28 H 1.09005 * 109.46998 * 270.00192 * 1 2 3 29 29 H 1.09001 * 109.46971 * 29.99808 * 1 2 3 30 30 H 1.08999 * 109.46989 * 150.00464 * 1 2 3 31 31 H 1.09001 * 109.47774 * 300.00133 * 5 3 2 32 32 H 1.08999 * 109.46972 * 60.00168 * 5 3 2 33 33 H 0.97004 * 119.99724 * 179.97438 * 10 9 7 34 34 H 1.08995 * 113.38810 * 166.91829 * 15 2 1 35 35 H 1.09003 * 113.47383 * 332.84944 * 16 15 2 36 36 H 1.08995 * 113.53328 * 202.39778 * 16 15 2 37 37 H 1.08998 * 109.62559 * 64.75256 * 20 18 17 38 38 H 1.08999 * 109.61493 * 304.20185 * 20 18 17 39 39 H 1.09005 * 109.52155 * 175.51393 * 21 20 18 40 40 H 1.09002 * 109.52213 * 295.64307 * 21 20 18 41 41 H 0.97002 * 118.70132 * 180.54955 * 24 22 21 42 42 H 1.08999 * 113.47639 * 87.75860 * 27 17 16 43 43 H 1.09003 * 113.47185 * 218.21890 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4415 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0024 9 6 1.9282 6.5081 -0.0028 10 7 3.2266 6.7247 -0.0026 11 14 0.7407 7.9500 -0.0036 12 1 0.4257 8.3326 1.3962 13 1 1.3622 9.1027 -0.7039 14 1 -0.5097 7.5612 -0.7040 15 6 2.1976 -1.2687 -0.0006 16 6 1.9053 -2.1638 1.2119 17 7 0.7724 -2.7280 0.4551 18 6 0.6877 -4.1828 0.6405 19 1 1.6093 -4.6495 0.2925 20 6 -0.4980 -4.7329 -0.1593 21 6 -0.6344 -6.2301 0.1377 22 6 -0.7642 -6.4292 1.6247 23 8 -1.3855 -7.3815 2.0448 24 7 -0.2060 -5.5729 2.4934 25 6 0.4857 -4.4929 2.1001 26 8 0.9572 -3.7523 2.9360 27 6 1.5044 -2.3943 -0.7810 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7590 2.5299 -0.8908 32 1 0.7584 2.5302 0.8892 33 1 3.5667 7.6331 -0.0031 34 1 3.2578 -1.1560 -0.2269 35 1 1.6012 -1.6078 2.0988 36 1 2.6934 -2.8879 1.4183 37 1 -0.3208 -4.5858 -1.2247 38 1 -1.4107 -4.2162 0.1374 39 1 -1.5213 -6.6211 -0.3609 40 1 0.2490 -6.7554 -0.2253 41 1 -0.3062 -5.7415 3.4434 42 1 2.1859 -3.1799 -1.1075 43 1 0.8604 -2.0339 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716735897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -79.931225 kcal Electronic energy + Delta-G solvation = -27222.226904 eV Core-core repulsion = 23201.459338 eV Total energy + Delta-G solvation = -4020.767566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.84630 -41.59693 -40.22517 -39.49690 -36.71978 -35.92099 -34.57507 -34.39521 -31.42696 -29.99794 -28.04150 -27.67190 -27.07934 -26.18617 -24.59281 -23.75136 -22.02372 -20.31316 -19.94465 -19.42886 -18.77729 -18.41302 -18.09725 -17.61492 -17.09447 -16.86932 -16.77378 -16.46496 -16.30979 -15.87858 -15.76287 -15.51570 -14.99547 -14.57686 -14.52328 -14.42868 -14.08217 -13.77042 -13.60014 -13.52009 -13.26331 -13.14900 -13.04597 -12.88792 -12.85069 -12.59267 -12.17978 -12.11948 -11.83824 -11.66998 -11.38881 -11.32761 -11.13486 -11.13059 -10.88789 -10.25813 -10.00119 -9.59495 -8.66004 -8.33693 -6.11706 0.42781 1.26351 1.43156 1.46406 1.56033 1.57644 1.64073 1.76116 2.10198 2.28490 2.77869 2.92446 3.00298 3.28038 3.42317 3.52064 3.67801 3.72812 3.81435 4.04772 4.07016 4.23742 4.30081 4.34625 4.42775 4.46640 4.52109 4.65477 4.73779 4.76702 4.85102 4.89239 4.92219 5.02209 5.07727 5.12659 5.20999 5.42782 5.64893 5.70500 5.88784 6.20796 6.32527 6.33572 6.75397 7.07474 7.16213 8.75502 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.002018 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.525543 B =13871.979571 C =14083.586900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.585 5.585 3 C 0.533 3.467 4 O -0.565 6.565 5 C -0.122 4.122 6 S -0.152 6.152 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.012 3.988 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.257 1.257 15 C 0.095 3.905 16 C 0.013 3.987 17 N -0.458 5.458 18 C 0.026 3.974 19 H 0.125 0.875 20 C -0.102 4.102 21 C -0.132 4.132 22 C 0.525 3.475 23 O -0.547 6.547 24 N -0.674 5.674 25 C 0.529 3.471 26 O -0.526 6.526 27 C 0.012 3.988 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.409 0.591 42 H 0.119 0.881 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -29.711 -4.535 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.317 5.317 3 C 0.321 3.679 4 O -0.443 6.443 5 C -0.273 4.273 6 S 0.075 5.925 7 C -0.693 4.693 8 H 0.100 0.900 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.181 1.181 15 C -0.011 4.011 16 C -0.117 4.117 17 N -0.181 5.181 18 C -0.085 4.085 19 H 0.142 0.858 20 C -0.140 4.140 21 C -0.171 4.171 22 C 0.317 3.683 23 O -0.422 6.422 24 N -0.338 5.338 25 C 0.318 3.682 26 O -0.399 6.399 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.248 0.752 42 H 0.137 0.863 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.613 -29.464 -3.995 31.249 hybrid contribution -0.861 0.656 1.201 1.617 sum -10.475 -28.808 -2.794 30.781 Atomic orbital electron populations 1.21974 0.76876 1.04579 1.02484 1.47367 1.08172 1.03613 1.72592 1.20122 0.87250 0.85389 0.75144 1.90668 1.15587 1.87465 1.50583 1.23362 1.02682 0.95010 1.06258 1.85551 1.12640 0.97260 1.97016 1.23188 0.94618 0.92642 1.58809 0.89959 1.26139 0.97621 1.01698 0.93780 1.70188 1.14083 1.22446 1.48023 0.84950 0.77942 0.76331 0.78735 1.19478 1.20239 1.18059 1.22261 0.97366 0.83231 0.98208 1.24052 0.93165 0.97128 0.97368 1.69112 1.34862 1.08470 1.05696 1.22650 1.03701 0.92757 0.89423 0.85756 1.21713 0.96659 0.92604 1.03038 1.22060 1.09004 0.98839 0.87227 1.21854 0.75120 0.79724 0.91605 1.90797 1.39848 1.30525 1.81062 1.44972 1.50290 1.25419 1.13110 1.21310 0.75172 0.78623 0.93060 1.90832 1.46626 1.46920 1.55520 1.24381 0.96946 0.96236 0.94121 0.93065 0.91001 0.87158 0.87122 0.88069 0.92012 0.88385 0.91949 0.89391 0.85389 0.90133 0.84852 0.84104 0.75205 0.86312 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 9.33 127.77 1.19 2.78 16 2 N -0.59 -15.41 3.11 -821.60 -2.56 -17.97 16 3 C 0.53 20.17 7.69 87.66 0.67 20.85 16 4 O -0.56 -26.30 15.37 -3.02 -0.05 -26.35 16 5 C -0.12 -4.96 4.71 71.24 0.34 -4.62 16 6 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 7 C -0.54 -31.29 9.50 67.96 0.65 -30.65 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 C 0.01 0.70 5.49 84.86 0.47 1.17 16 10 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 11 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 C 0.09 1.96 4.66 45.45 0.21 2.17 16 16 C 0.01 0.25 5.20 83.57 0.43 0.68 16 17 N -0.46 -5.41 4.70 -906.75 -4.26 -9.67 16 18 C 0.03 0.17 1.85 44.21 0.08 0.26 16 19 H 0.13 0.18 7.53 -2.38 -0.02 0.17 16 20 C -0.10 -0.09 5.56 30.76 0.17 0.08 16 21 C -0.13 -0.09 6.07 29.89 0.18 0.09 16 22 C 0.53 5.47 7.74 87.72 0.68 6.15 16 23 O -0.55 -10.31 17.87 -2.84 -0.05 -10.36 16 24 N -0.67 -7.95 5.09 -428.64 -2.18 -10.13 16 25 C 0.53 7.25 7.53 87.72 0.66 7.91 16 26 O -0.53 -11.90 14.88 -2.85 -0.04 -11.94 16 27 C 0.01 0.11 6.58 83.57 0.55 0.66 16 28 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 1.37 6.44 -2.39 -0.02 1.36 16 30 H 0.11 1.47 5.68 -2.39 -0.01 1.45 16 31 H 0.11 4.00 7.40 -2.40 -0.02 3.99 16 32 H 0.10 3.85 8.11 -2.39 -0.02 3.83 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.10 2.43 7.29 -2.39 -0.02 2.41 16 35 H 0.06 1.66 7.75 -2.39 -0.02 1.65 16 36 H 0.09 1.50 7.70 -2.39 -0.02 1.48 16 37 H 0.13 -0.52 8.13 -2.39 -0.02 -0.54 16 38 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.13 -0.16 8.14 -2.38 -0.02 -0.17 16 40 H 0.14 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.41 5.19 8.79 -92.71 -0.81 4.38 16 42 H 0.12 0.36 7.55 -2.39 -0.02 0.35 16 43 H 0.11 0.82 7.25 -2.39 -0.02 0.80 16 Total: -1.00 -87.93 365.92 -1.47 -89.39 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.24 Total: 9.34 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.28 Total: 7.53 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -8.72 Total: -93.71 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.14 Total: -48.65 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -87.93 -1.47 -89.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.463 kcal (2) G-P(sol) polarization free energy of solvation -87.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds