Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00349 * 2 1 4 4 H 1.48498 * 109.47285 * 271.87091 * 3 2 1 5 5 H 1.48505 * 109.46868 * 31.86783 * 3 2 1 6 6 H 1.48504 * 109.47117 * 151.86691 * 3 2 1 7 7 C 1.38814 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00246 * 328.40084 * 7 2 1 9 9 N 1.36938 * 119.99681 * 148.12867 * 7 2 1 10 10 C 1.46966 * 120.59473 * 148.12025 * 9 7 2 11 11 C 1.53813 * 108.40073 * 124.75747 * 10 9 7 12 12 N 1.46963 * 108.57936 * 49.63410 * 11 10 9 13 13 C 1.34772 * 120.59350 * 124.66759 * 12 11 10 14 14 O 1.21511 * 120.00173 * 186.27689 * 13 12 11 15 15 C 1.48160 * 119.99737 * 6.28370 * 13 12 11 16 16 C 1.39173 * 119.68770 * 194.94775 * 15 13 12 17 17 C 1.38738 * 119.18453 * 179.97438 * 16 15 13 18 18 C 1.38366 * 118.55884 * 359.97438 * 17 16 15 19 19 C 1.39248 * 119.30852 * 0.02562 * 18 17 16 20 20 O 1.35671 * 119.61535 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99929 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47251 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.46862 * 299.99918 * 22 21 20 24 24 F 1.39896 * 109.46877 * 59.99839 * 22 21 20 25 25 N 1.31927 * 120.76795 * 359.72061 * 19 18 17 26 26 C 1.46966 * 118.81407 * 304.65237 * 12 11 10 27 27 C 1.46963 * 120.59194 * 328.39596 * 9 7 2 28 28 H 0.97005 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.61013 * 244.54107 * 10 9 7 30 30 H 1.08997 * 109.61124 * 5.04661 * 10 9 7 31 31 H 1.09006 * 109.73591 * 289.84520 * 11 10 9 32 32 H 1.08993 * 109.53426 * 169.30222 * 11 10 9 33 33 H 1.07997 * 120.40532 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.71974 * 180.02562 * 17 16 15 35 35 H 1.08007 * 120.34680 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47019 * 300.00512 * 21 20 19 37 37 H 1.09002 * 109.46906 * 60.00047 * 21 20 19 38 38 H 1.08998 * 109.46942 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.60670 * 295.48269 * 26 12 11 40 40 H 1.08997 * 109.61276 * 174.97152 * 26 12 11 41 41 H 1.08993 * 109.61129 * 354.94964 * 27 9 7 42 42 H 1.09008 * 109.60839 * 115.46069 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4582 2.0692 -1.3993 5 1 1.4680 2.6409 0.7392 6 1 3.5670 1.4289 0.6602 7 6 2.0101 -1.2022 0.0005 8 1 1.5902 -2.0680 0.4910 9 7 3.2247 -1.2920 -0.6256 10 6 4.2637 -2.1980 -0.1163 11 6 4.6921 -3.1359 -1.2577 12 7 4.9820 -2.3234 -2.4475 13 6 6.1773 -2.4116 -3.0637 14 8 6.4483 -1.6552 -3.9753 15 6 7.1610 -3.4311 -2.6298 16 6 8.4874 -3.3268 -3.0380 17 6 9.3998 -4.2869 -2.6251 18 6 8.9547 -5.3184 -1.8174 19 6 7.6135 -5.3629 -1.4456 20 8 7.1702 -6.3718 -0.6543 21 6 5.7841 -6.3624 -0.3065 22 6 5.4735 -7.5674 0.5836 23 9 5.7731 -8.7467 -0.1069 24 9 6.2467 -7.4991 1.7474 25 7 6.7699 -4.4326 -1.8499 26 6 3.9450 -1.4132 -2.9535 27 6 3.5145 -0.4795 -1.8154 28 1 -0.4850 0.8401 -0.0004 29 1 5.1207 -1.6170 0.2246 30 1 3.8641 -2.7847 0.7109 31 1 3.8872 -3.8364 -1.4802 32 1 5.5865 -3.6843 -0.9624 33 1 8.8027 -2.5081 -3.6679 34 1 10.4352 -4.2300 -2.9269 35 1 9.6403 -6.0812 -1.4788 36 1 5.5508 -5.4437 0.2317 37 1 5.1817 -6.4151 -1.2134 38 1 4.4162 -7.5605 0.8484 39 1 3.0869 -1.9911 -3.2968 40 1 4.3460 -0.8241 -3.7782 41 1 2.6201 0.0689 -2.1107 42 1 4.3195 0.2211 -1.5928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090052487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -78.544163 kcal Electronic energy + Delta-G solvation = -30523.401035 eV Core-core repulsion = 25948.853230 eV Total energy + Delta-G solvation = -4574.547805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.21134 -47.23762 -41.28928 -39.59635 -38.13153 -37.01443 -34.22264 -32.94889 -31.74439 -31.52853 -30.56705 -29.89446 -27.40287 -25.14941 -24.16546 -23.52160 -22.85896 -22.74339 -21.12231 -19.77250 -18.65339 -17.86598 -17.75087 -17.30260 -16.90057 -16.49489 -16.41326 -16.23013 -15.75384 -15.48585 -15.21669 -14.71286 -14.26082 -14.13955 -14.04911 -13.95035 -13.81441 -13.61463 -13.54916 -13.40485 -12.90430 -12.66821 -12.48281 -12.38839 -12.27433 -11.89269 -11.55664 -11.38276 -11.17857 -10.81233 -10.61361 -10.40196 -10.38808 -10.30759 -10.16014 -9.71301 -9.20633 -8.93417 -8.67621 -8.29766 -6.96362 -6.12626 -3.40980 0.41967 0.90903 2.36682 2.69686 3.06639 3.30748 3.42283 3.45297 3.52102 3.56881 3.79889 3.85031 4.15689 4.43844 4.47545 4.50532 4.67159 4.69566 4.87232 4.90530 5.04765 5.06674 5.13545 5.23301 5.56194 5.61635 5.66917 5.79334 5.84668 5.94595 6.00368 6.05454 6.13274 6.32845 6.43784 6.54201 6.68443 6.73945 6.92613 7.28485 7.65901 7.87307 8.22847 8.24611 8.83694 9.61388 10.02947 11.02627 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.003883 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.434694 B = 7208.789817 C = 9147.779989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.857 3.143 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.274 4.274 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.128 3.872 11 C 0.058 3.942 12 N -0.573 5.573 13 C 0.560 3.440 14 O -0.543 6.543 15 C 0.130 3.870 16 C -0.147 4.147 17 C -0.045 4.045 18 C -0.166 4.166 19 C 0.315 3.685 20 O -0.293 6.293 21 C 0.012 3.988 22 C 0.271 3.729 23 F -0.200 7.200 24 F -0.198 7.198 25 N -0.505 5.505 26 C 0.092 3.908 27 C 0.126 3.874 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.302 -14.046 -2.698 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.161 4.161 3 Si 0.684 3.316 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.402 4.402 8 H 0.099 0.901 9 N -0.325 5.325 10 C 0.001 3.999 11 C -0.066 4.066 12 N -0.303 5.303 13 C 0.346 3.654 14 O -0.421 6.421 15 C -0.006 4.006 16 C -0.168 4.168 17 C -0.070 4.070 18 C -0.187 4.187 19 C 0.135 3.865 20 O -0.200 6.200 21 C -0.064 4.064 22 C 0.217 3.783 23 F -0.182 7.182 24 F -0.180 7.180 25 N -0.232 5.232 26 C -0.031 4.031 27 C 0.000 4.000 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.495 -13.843 -2.755 20.960 hybrid contribution 0.978 1.113 -0.036 1.482 sum 16.473 -12.730 -2.791 21.005 Atomic orbital electron populations 1.70005 1.06094 1.27003 1.49442 1.25347 0.94910 0.97493 0.98361 0.87184 0.80851 0.85600 0.77931 1.21102 1.22416 1.19866 1.18757 0.92185 0.95746 1.33479 0.90085 1.44327 1.13006 1.47774 1.27384 1.21538 0.91648 0.92419 0.94301 1.23569 1.03656 0.94056 0.85292 1.47886 1.12882 1.41007 1.28530 1.17880 0.81656 0.83047 0.82801 1.90758 1.77384 1.43034 1.30909 1.20944 0.93451 0.92547 0.93625 1.21993 0.92366 1.01020 1.01442 1.21458 1.00425 0.91633 0.93474 1.21261 0.93642 1.01754 1.02013 1.19885 0.90131 0.86534 0.89926 1.86290 1.26670 1.43590 1.63452 1.24034 0.82052 0.99208 1.01145 1.22147 0.95884 0.81575 0.78645 1.93018 1.95086 1.50269 1.79777 1.93025 1.78488 1.96350 1.50095 1.67418 1.36606 1.04474 1.14715 1.22375 0.89603 0.92966 0.98171 1.21590 0.99332 0.92540 0.86578 0.92591 0.95972 0.90850 0.91631 0.85416 0.83080 0.83176 0.83502 0.87824 0.88025 0.84657 0.90804 0.89647 0.89830 0.95703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.97 55.49 0.78 -25.19 16 2 C 0.04 1.12 4.91 -17.43 -0.09 1.04 16 3 Si 0.86 21.54 25.41 -169.99 -4.32 17.22 16 4 H -0.28 -6.94 6.83 56.52 0.39 -6.55 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.27 -7.29 9.85 -15.06 -0.15 -7.44 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 N -0.60 -13.78 2.62 -171.76 -0.45 -14.23 16 10 C 0.13 2.39 6.70 -3.36 -0.02 2.37 16 11 C 0.06 0.92 6.09 -3.37 -0.02 0.90 16 12 N -0.57 -9.99 2.95 -173.21 -0.51 -10.50 16 13 C 0.56 9.44 7.64 -12.19 -0.09 9.34 16 14 O -0.54 -10.27 15.83 5.36 0.08 -10.18 16 15 C 0.13 1.78 6.51 -83.02 -0.54 1.24 16 16 C -0.15 -1.61 9.62 -39.05 -0.38 -1.98 16 17 C -0.04 -0.36 10.16 -39.35 -0.40 -0.76 16 18 C -0.17 -1.47 10.04 -39.16 -0.39 -1.86 16 19 C 0.32 3.51 7.49 -17.14 -0.13 3.38 16 20 O -0.29 -3.18 10.00 -18.72 -0.19 -3.36 16 21 C 0.01 0.11 5.43 37.16 0.20 0.31 16 22 C 0.27 2.15 5.63 37.16 0.21 2.36 16 23 F -0.20 -2.02 17.28 2.25 0.04 -1.98 16 24 F -0.20 -2.05 17.28 2.25 0.04 -2.01 16 25 N -0.50 -6.36 5.19 -9.87 -0.05 -6.41 16 26 C 0.09 1.72 6.60 -3.60 -0.02 1.70 16 27 C 0.13 2.74 4.56 -3.60 -0.02 2.72 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.13 1.79 2.96 -80.70 -0.24 1.56 16 33 H 0.15 1.57 7.71 -52.49 -0.40 1.17 16 34 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.10 0.89 7.21 -51.93 -0.37 0.51 16 37 H 0.10 0.85 8.10 -51.93 -0.42 0.42 16 38 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.55 6.99 -51.93 -0.36 1.18 16 41 H 0.08 1.94 5.68 -51.93 -0.30 1.65 16 42 H 0.03 0.55 7.65 -51.92 -0.40 0.16 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -33.25 352.12 -6.13 -39.38 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.02 Total: -1.35 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -1.84 Total: 13.32 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.24 Total: -56.33 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.10 Total: -13.55 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.32 Total: 17.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.25 -6.13 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090052487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.166 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds