Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00349 * 2 1 4 4 H 1.48498 * 109.47285 * 271.87091 * 3 2 1 5 5 H 1.48505 * 109.46868 * 31.86783 * 3 2 1 6 6 H 1.48504 * 109.47117 * 151.86691 * 3 2 1 7 7 C 1.38814 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00246 * 328.40084 * 7 2 1 9 9 N 1.36938 * 119.99681 * 148.12867 * 7 2 1 10 10 C 1.46966 * 120.59473 * 148.12025 * 9 7 2 11 11 C 1.53813 * 108.40073 * 124.75747 * 10 9 7 12 12 N 1.46963 * 108.57936 * 49.63410 * 11 10 9 13 13 C 1.34772 * 120.59350 * 124.66759 * 12 11 10 14 14 O 1.21511 * 120.00173 * 186.27689 * 13 12 11 15 15 C 1.48160 * 119.99737 * 6.28370 * 13 12 11 16 16 C 1.39173 * 119.68770 * 194.94775 * 15 13 12 17 17 C 1.38738 * 119.18453 * 179.97438 * 16 15 13 18 18 C 1.38366 * 118.55884 * 359.97438 * 17 16 15 19 19 C 1.39248 * 119.30852 * 0.02562 * 18 17 16 20 20 O 1.35671 * 119.61535 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99929 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47251 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.46862 * 299.99918 * 22 21 20 24 24 F 1.39896 * 109.46877 * 59.99839 * 22 21 20 25 25 N 1.31927 * 120.76795 * 359.72061 * 19 18 17 26 26 C 1.46966 * 118.81407 * 304.65237 * 12 11 10 27 27 C 1.46963 * 120.59194 * 328.39596 * 9 7 2 28 28 H 0.97005 * 120.00089 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.61013 * 244.54107 * 10 9 7 30 30 H 1.08997 * 109.61124 * 5.04661 * 10 9 7 31 31 H 1.09006 * 109.73591 * 289.84520 * 11 10 9 32 32 H 1.08993 * 109.53426 * 169.30222 * 11 10 9 33 33 H 1.07997 * 120.40532 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.71974 * 180.02562 * 17 16 15 35 35 H 1.08007 * 120.34680 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47019 * 300.00512 * 21 20 19 37 37 H 1.09002 * 109.46906 * 60.00047 * 21 20 19 38 38 H 1.08998 * 109.46942 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.60670 * 295.48269 * 26 12 11 40 40 H 1.08997 * 109.61276 * 174.97152 * 26 12 11 41 41 H 1.08993 * 109.61129 * 354.94964 * 27 9 7 42 42 H 1.09008 * 109.60839 * 115.46069 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4582 2.0692 -1.3993 5 1 1.4680 2.6409 0.7392 6 1 3.5670 1.4289 0.6602 7 6 2.0101 -1.2022 0.0005 8 1 1.5902 -2.0680 0.4910 9 7 3.2247 -1.2920 -0.6256 10 6 4.2637 -2.1980 -0.1163 11 6 4.6921 -3.1359 -1.2577 12 7 4.9820 -2.3234 -2.4475 13 6 6.1773 -2.4116 -3.0637 14 8 6.4483 -1.6552 -3.9753 15 6 7.1610 -3.4311 -2.6298 16 6 8.4874 -3.3268 -3.0380 17 6 9.3998 -4.2869 -2.6251 18 6 8.9547 -5.3184 -1.8174 19 6 7.6135 -5.3629 -1.4456 20 8 7.1702 -6.3718 -0.6543 21 6 5.7841 -6.3624 -0.3065 22 6 5.4735 -7.5674 0.5836 23 9 5.7731 -8.7467 -0.1069 24 9 6.2467 -7.4991 1.7474 25 7 6.7699 -4.4326 -1.8499 26 6 3.9450 -1.4132 -2.9535 27 6 3.5145 -0.4795 -1.8154 28 1 -0.4850 0.8401 -0.0004 29 1 5.1207 -1.6170 0.2246 30 1 3.8641 -2.7847 0.7109 31 1 3.8872 -3.8364 -1.4802 32 1 5.5865 -3.6843 -0.9624 33 1 8.8027 -2.5081 -3.6679 34 1 10.4352 -4.2300 -2.9269 35 1 9.6403 -6.0812 -1.4788 36 1 5.5508 -5.4437 0.2317 37 1 5.1817 -6.4151 -1.2134 38 1 4.4162 -7.5605 0.8484 39 1 3.0869 -1.9911 -3.2968 40 1 4.3460 -0.8241 -3.7782 41 1 2.6201 0.0689 -2.1107 42 1 4.3195 0.2211 -1.5928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090052487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -100.905469 kcal Electronic energy + Delta-G solvation = -30524.370694 eV Core-core repulsion = 25948.853230 eV Total energy + Delta-G solvation = -4575.517464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90852 -47.95149 -42.21891 -40.77447 -39.10002 -38.46192 -35.81322 -34.01605 -33.39115 -32.59909 -31.95533 -30.69734 -29.00525 -26.31232 -25.24760 -24.99489 -24.20077 -23.47401 -22.53084 -21.08325 -19.53143 -19.20346 -18.52012 -18.27909 -18.01177 -17.66183 -17.22043 -17.08706 -16.99735 -16.86854 -16.39929 -16.23343 -15.99910 -15.43376 -15.09059 -14.92845 -14.81618 -14.65205 -14.58491 -14.44406 -14.31533 -14.10516 -13.96124 -13.42604 -13.33377 -13.11217 -12.84656 -12.51593 -12.47842 -12.28233 -12.14360 -12.03319 -11.99274 -11.73495 -11.57520 -11.03384 -10.79620 -10.18967 -9.98714 -9.65194 -8.82045 -8.26954 -5.50775 -0.46190 0.15188 1.28793 1.38999 1.47895 1.57545 1.67476 1.82243 2.39652 2.64274 2.75182 2.80120 2.96773 3.30134 3.35890 3.49348 3.53446 3.81212 3.95026 4.01362 4.08238 4.10856 4.20287 4.31835 4.36206 4.40353 4.42453 4.47358 4.55415 4.66364 4.78501 4.89467 4.90491 5.00607 5.08815 5.17418 5.28507 5.44946 5.84458 5.97554 6.10953 6.29677 6.46939 6.86269 6.95834 7.56449 8.02449 8.92294 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.003883 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.434694 B = 7208.789817 C = 9147.779989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.259 4.259 8 H 0.060 0.940 9 N -0.613 5.613 10 C 0.124 3.876 11 C 0.072 3.928 12 N -0.583 5.583 13 C 0.560 3.440 14 O -0.570 6.570 15 C 0.101 3.899 16 C -0.143 4.143 17 C -0.027 4.027 18 C -0.153 4.153 19 C 0.303 3.697 20 O -0.302 6.302 21 C 0.007 3.993 22 C 0.269 3.731 23 F -0.213 7.213 24 F -0.213 7.213 25 N -0.518 5.518 26 C 0.103 3.897 27 C 0.126 3.874 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.194 0.806 35 H 0.175 0.825 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.176 0.824 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.216 -15.389 -2.937 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.078 0.922 9 N -0.338 5.338 10 C -0.002 4.002 11 C -0.051 4.051 12 N -0.313 5.313 13 C 0.348 3.652 14 O -0.450 6.450 15 C -0.034 4.034 16 C -0.165 4.165 17 C -0.052 4.052 18 C -0.174 4.174 19 C 0.122 3.878 20 O -0.209 6.209 21 C -0.070 4.070 22 C 0.216 3.784 23 F -0.195 7.195 24 F -0.194 7.194 25 N -0.246 5.246 26 C -0.021 4.021 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.211 0.789 35 H 0.193 0.807 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.193 0.807 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 18.455 -15.200 -3.001 24.096 hybrid contribution 0.197 1.385 0.035 1.399 sum 18.652 -13.815 -2.966 23.400 Atomic orbital electron populations 1.70081 1.07323 1.27483 1.52286 1.25774 0.95292 0.99911 0.99375 0.86323 0.79237 0.82572 0.78112 1.20199 1.22838 1.20231 1.18753 0.93244 0.94819 1.32038 0.92213 1.44453 1.13004 1.48486 1.27851 1.21736 0.90394 0.92171 0.95852 1.23560 1.04853 0.93009 0.83697 1.47965 1.13070 1.41097 1.29176 1.18367 0.81563 0.83186 0.82062 1.90728 1.77906 1.44344 1.31987 1.20533 0.93685 0.92908 0.96265 1.22174 0.91676 1.01738 1.00911 1.21910 1.01757 0.89767 0.91784 1.21711 0.92970 1.02077 1.00601 1.20189 0.90971 0.86412 0.90190 1.86297 1.27619 1.43544 1.63465 1.24190 0.81411 0.99796 1.01557 1.22585 0.97488 0.80542 0.77762 1.92989 1.95308 1.51058 1.80099 1.92992 1.79158 1.96360 1.50908 1.67032 1.37563 1.04824 1.15190 1.22086 0.90274 0.92819 0.96946 1.21522 0.98284 0.92960 0.87219 0.92676 0.96024 0.89893 0.91406 0.83052 0.82813 0.78850 0.80720 0.87612 0.87599 0.80715 0.90824 0.89191 0.91788 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.97 21.65 0.30 -55.41 16 2 C -0.01 -0.31 4.91 84.86 0.42 0.11 16 3 Si 0.91 45.20 25.41 68.60 1.74 46.94 16 4 H -0.28 -13.17 6.83 99.48 0.68 -12.49 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.26 -13.99 9.85 84.03 0.83 -13.16 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.61 -28.10 2.62 -697.34 -1.83 -29.93 16 10 C 0.12 4.55 6.70 86.56 0.58 5.13 16 11 C 0.07 2.20 6.09 86.57 0.53 2.73 16 12 N -0.58 -19.93 2.95 -820.21 -2.42 -22.35 16 13 C 0.56 18.39 7.64 86.88 0.66 19.06 16 14 O -0.57 -21.27 15.83 -3.75 -0.06 -21.32 16 15 C 0.10 2.57 6.51 41.86 0.27 2.85 16 16 C -0.14 -2.74 9.62 22.61 0.22 -2.52 16 17 C -0.03 -0.32 10.16 22.42 0.23 -0.09 16 18 C -0.15 -2.08 10.04 22.54 0.23 -1.85 16 19 C 0.30 5.92 7.49 84.92 0.64 6.55 16 20 O -0.30 -5.87 10.00 -89.88 -0.90 -6.77 16 21 C 0.01 0.11 5.43 71.98 0.39 0.50 16 22 C 0.27 3.76 5.63 71.98 0.41 4.17 16 23 F -0.21 -3.96 17.28 44.97 0.78 -3.18 16 24 F -0.21 -4.06 17.28 44.97 0.78 -3.28 16 25 N -0.52 -12.02 5.19 -298.17 -1.55 -13.57 16 26 C 0.10 3.83 6.60 86.42 0.57 4.40 16 27 C 0.13 5.49 4.56 86.42 0.39 5.89 16 28 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.15 4.01 2.96 -59.19 -0.18 3.84 16 33 H 0.15 2.83 7.71 -2.91 -0.02 2.81 16 34 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.11 1.62 7.21 -2.39 -0.02 1.60 16 37 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 38 H 0.18 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 40 H 0.09 3.26 6.99 -2.39 -0.02 3.24 16 41 H 0.06 3.01 5.68 -2.39 -0.01 3.00 16 42 H 0.02 0.91 7.65 -2.38 -0.02 0.89 16 Total: -1.00 -73.08 352.12 4.08 -69.01 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.87 Total: 6.12 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 6.36 Total: 33.75 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -5.49 Total: -121.26 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.96 Total: -28.09 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.55 Total: -6.46 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.74 Total: 46.94 kcal Total: -73.08 4.08 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090052487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.899 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds