Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47247 * 2 1 4 4 N 1.30003 * 127.40201 * 269.98021 * 3 2 1 5 5 O 1.20858 * 113.53061 * 180.02562 * 4 3 2 6 6 C 1.34454 * 113.07506 * 359.97438 * 5 4 3 7 7 N 1.32328 * 134.98766 * 179.97438 * 6 5 4 8 8 C 1.31476 * 121.77590 * 179.76274 * 7 6 5 9 9 C 1.40025 * 121.52269 * 0.51350 * 8 7 6 10 10 C 1.47682 * 120.50388 * 179.75984 * 9 8 7 11 11 O 1.21582 * 120.00111 * 179.71787 * 10 9 8 12 12 N 1.34783 * 119.99762 * 359.72056 * 10 9 8 13 13 C 1.40096 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.40423 * 125.97749 * 0.02562 * 13 12 10 15 15 C 1.35229 * 107.86434 * 179.71249 * 14 13 12 16 16 N 1.34966 * 107.86733 * 0.42228 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.83656 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31231 * 125.97244 * 179.97438 * 13 12 10 27 27 C 1.39915 * 118.99167 * 359.48270 * 9 8 7 28 28 C 1.38661 * 117.71011 * 0.25602 * 27 9 8 29 29 H 1.09007 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47127 * 299.99337 * 1 2 3 31 31 H 1.08997 * 109.47502 * 60.00017 * 1 2 3 32 32 H 1.09004 * 109.47127 * 240.00663 * 2 1 3 33 33 H 1.09001 * 109.47673 * 120.00721 * 2 1 3 34 34 H 1.08004 * 119.23594 * 180.27208 * 8 7 6 35 35 H 0.96993 * 120.00066 * 0.02562 * 12 10 9 36 36 H 1.07998 * 126.06562 * 359.97438 * 14 13 12 37 37 H 1.08002 * 126.06726 * 180.27765 * 15 14 13 38 38 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 39 39 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 40 40 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 41 41 H 1.08005 * 121.14527 * 180.27458 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2959 2.1651 -1.0327 5 8 2.6874 3.2712 -0.7430 6 6 2.7585 3.4742 0.5842 7 7 3.1169 4.4861 1.3580 8 6 3.0811 4.4013 2.6695 9 6 2.6709 3.2291 3.3165 10 6 2.6443 3.1569 4.7913 11 8 2.2817 2.1362 5.3435 12 7 3.0221 4.2225 5.5251 13 6 2.9963 4.1540 6.9241 14 6 2.6019 3.0442 7.6887 15 6 2.7247 3.3750 8.9941 16 7 3.1701 4.6474 9.0588 17 6 3.4379 5.4043 10.2842 18 6 4.8547 5.9172 10.2583 19 1 5.4918 5.7013 9.4134 20 6 5.3377 6.6620 11.3132 21 7 4.5603 6.9294 12.3398 22 14 7.0937 7.2983 11.2809 23 1 7.3633 8.0706 12.5203 24 1 8.0341 6.1520 11.1974 25 1 7.2795 8.1782 10.0992 26 7 3.3376 5.1157 7.7493 27 6 2.2810 2.1293 2.5444 28 6 2.3281 2.2608 1.1648 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3786 5.2542 3.2616 35 1 3.3110 5.0368 5.0845 36 1 2.2647 2.0936 7.3026 37 1 2.5032 2.7353 9.8357 38 1 3.3024 4.7550 11.1492 39 1 2.7480 6.2456 10.3497 40 1 3.6483 6.5992 12.3565 41 1 1.9543 1.2097 3.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117717496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = 140.525827 kcal Electronic energy + Delta-G solvation = -27494.947463 eV Core-core repulsion = 23380.588432 eV Total energy + Delta-G solvation = -4114.359031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.24496 -41.14529 -40.33660 -38.94711 -36.11667 -35.14496 -33.81876 -33.15243 -32.07635 -31.56885 -30.79536 -29.51405 -26.93693 -25.95021 -24.96256 -24.51467 -23.24830 -22.24000 -21.38890 -20.77362 -20.06494 -18.76119 -18.41037 -18.27369 -17.44089 -17.25365 -16.45644 -16.39275 -15.57379 -15.26673 -15.00707 -14.69115 -14.47560 -14.27221 -14.05468 -13.84898 -13.84425 -13.76568 -13.38415 -13.24418 -12.57151 -12.35618 -12.34264 -12.22170 -11.93189 -11.62342 -11.47091 -11.23003 -10.87741 -10.65380 -10.50400 -10.19299 -10.11336 -9.88836 -9.83899 -9.70953 -9.07040 -8.62728 -8.34473 -7.66186 -6.62714 -4.37307 -0.06812 -0.01718 1.53259 1.71841 2.13003 2.40100 2.67055 3.06306 3.23971 3.35176 3.36794 3.41348 3.54979 3.57575 3.59717 3.81619 4.02666 4.15048 4.29224 4.37426 4.38130 4.63303 4.66364 4.71059 5.02559 5.10895 5.23291 5.26826 5.28784 5.35920 5.41584 5.51185 5.60931 5.64073 5.99613 6.27283 6.35276 6.49227 6.67423 6.86341 7.13170 7.30204 7.60726 7.64779 7.73087 7.89583 8.27969 8.41375 8.55732 9.30884 10.74931 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.001998 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.375212 B =14012.005892 C =14930.821134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C 0.076 3.924 4 N -0.314 5.314 5 O 0.086 5.914 6 C 0.232 3.768 7 N -0.458 5.458 8 C 0.197 3.803 9 C -0.197 4.197 10 C 0.576 3.424 11 O -0.507 6.507 12 N -0.621 5.621 13 C 0.256 3.744 14 C -0.283 4.283 15 C 0.052 3.948 16 N -0.314 5.314 17 C 0.248 3.752 18 C -0.609 4.609 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.903 5.903 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.296 5.296 27 C 0.071 3.929 28 C -0.226 4.226 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.183 0.817 35 H 0.411 0.589 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -12.665 -22.615 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.094 4.094 4 N -0.020 5.020 5 O 0.029 5.971 6 C 0.051 3.949 7 N -0.175 5.175 8 C 0.031 3.969 9 C -0.203 4.203 10 C 0.361 3.639 11 O -0.381 6.381 12 N -0.269 5.269 13 C 0.003 3.997 14 C -0.314 4.314 15 C -0.097 4.097 16 N -0.096 5.096 17 C 0.130 3.870 18 C -0.647 4.647 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.539 5.539 22 Si 0.903 3.097 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.211 1.211 26 N -0.127 5.127 27 C 0.042 3.958 28 C -0.231 4.231 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.248 0.752 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.758 -10.607 -22.951 25.931 hybrid contribution -1.463 -1.877 -0.007 2.379 sum -7.221 -12.484 -22.958 27.112 Atomic orbital electron populations 1.21762 0.93146 1.03031 1.02822 1.20094 0.96935 0.86680 1.04876 1.24354 0.99942 0.98584 0.86491 1.73512 1.13661 0.91740 1.23079 1.84934 1.66808 1.26046 1.19303 1.21795 0.95602 0.91119 0.86423 1.66440 1.17791 1.28398 1.04830 1.23184 0.89564 0.96290 0.87839 1.20780 1.08594 0.96628 0.94256 1.17547 0.77857 0.83110 0.85356 1.90753 1.45744 1.29903 1.71703 1.42210 1.65076 1.16499 1.03104 1.18993 1.02687 0.94800 0.83215 1.21519 1.17505 1.01562 0.90858 1.22585 1.00508 0.87925 0.98721 1.48830 1.46190 1.09676 1.04867 1.19801 0.98983 0.91418 0.76762 1.22086 0.96289 1.38096 1.08257 0.91806 1.25929 1.06269 0.94111 0.91854 1.70858 1.08729 1.43564 1.30712 0.83420 0.73423 0.76528 0.76293 1.20511 1.21224 1.21088 1.77371 1.26137 1.21137 0.88084 1.20930 0.87261 0.98294 0.89298 1.20866 1.10100 0.96593 0.95590 0.90919 0.91986 0.92142 0.89024 0.88653 0.80073 0.75241 0.82042 0.81340 0.93517 0.94643 0.92268 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.15 0.37 -0.31 16 2 C -0.05 -0.24 6.55 -27.89 -0.18 -0.43 16 3 C 0.08 0.64 6.84 -79.98 -0.55 0.09 16 4 N -0.31 -3.19 11.94 34.92 0.42 -2.77 16 5 O 0.09 0.94 11.12 16.08 0.18 1.12 16 6 C 0.23 2.49 8.75 -16.20 -0.14 2.34 16 7 N -0.46 -4.81 10.36 -12.60 -0.13 -4.94 16 8 C 0.20 1.71 10.68 -17.03 -0.18 1.53 16 9 C -0.20 -1.88 5.90 -104.74 -0.62 -2.49 16 10 C 0.58 7.19 7.74 -12.40 -0.10 7.09 16 11 O -0.51 -7.60 13.55 5.29 0.07 -7.53 16 12 N -0.62 -8.43 5.40 -12.03 -0.06 -8.49 16 13 C 0.26 4.72 8.11 -154.43 -1.25 3.47 16 14 C -0.28 -5.16 9.60 -39.83 -0.38 -5.55 16 15 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 16 N -0.31 -6.97 3.67 -62.56 -0.23 -7.20 16 17 C 0.25 6.05 5.57 -5.19 -0.03 6.02 16 18 C -0.61 -16.64 9.24 -34.44 -0.32 -16.95 16 19 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 21 N -0.90 -25.77 13.65 55.43 0.76 -25.01 16 22 Si 1.08 24.39 29.90 -169.99 -5.08 19.31 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.30 -6.45 12.42 31.43 0.39 -6.06 16 27 C 0.07 0.61 9.75 -38.80 -0.38 0.23 16 28 C -0.23 -2.08 6.55 -105.22 -0.69 -2.77 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.18 1.05 6.39 -52.48 -0.34 0.71 16 35 H 0.41 4.29 6.87 -40.82 -0.28 4.01 16 36 H 0.16 2.79 5.91 -52.49 -0.31 2.48 16 37 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 39 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.43 7.22 -40.82 -0.29 7.14 16 41 H 0.16 1.17 7.74 -52.48 -0.41 0.76 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -33.65 362.05 -7.18 -40.83 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.20 Total: 1.70 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.74 Total: -6.40 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 1.14 Total: -54.48 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.25 Total: -6.41 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.65 -7.18 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117717496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.357 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds