Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47247 * 2 1 4 4 N 1.30003 * 127.40201 * 269.98021 * 3 2 1 5 5 O 1.20858 * 113.53061 * 180.02562 * 4 3 2 6 6 C 1.34454 * 113.07506 * 359.97438 * 5 4 3 7 7 N 1.32328 * 134.98766 * 179.97438 * 6 5 4 8 8 C 1.31476 * 121.77590 * 179.76274 * 7 6 5 9 9 C 1.40025 * 121.52269 * 0.51350 * 8 7 6 10 10 C 1.47682 * 120.50388 * 179.75984 * 9 8 7 11 11 O 1.21582 * 120.00111 * 179.71787 * 10 9 8 12 12 N 1.34783 * 119.99762 * 359.72056 * 10 9 8 13 13 C 1.40096 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.40423 * 125.97749 * 0.02562 * 13 12 10 15 15 C 1.35229 * 107.86434 * 179.71249 * 14 13 12 16 16 N 1.34966 * 107.86733 * 0.42228 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.83656 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31231 * 125.97244 * 179.97438 * 13 12 10 27 27 C 1.39915 * 118.99167 * 359.48270 * 9 8 7 28 28 C 1.38661 * 117.71011 * 0.25602 * 27 9 8 29 29 H 1.09007 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47127 * 299.99337 * 1 2 3 31 31 H 1.08997 * 109.47502 * 60.00017 * 1 2 3 32 32 H 1.09004 * 109.47127 * 240.00663 * 2 1 3 33 33 H 1.09001 * 109.47673 * 120.00721 * 2 1 3 34 34 H 1.08004 * 119.23594 * 180.27208 * 8 7 6 35 35 H 0.96993 * 120.00066 * 0.02562 * 12 10 9 36 36 H 1.07998 * 126.06562 * 359.97438 * 14 13 12 37 37 H 1.08002 * 126.06726 * 180.27765 * 15 14 13 38 38 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 39 39 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 40 40 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 41 41 H 1.08005 * 121.14527 * 180.27458 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2959 2.1651 -1.0327 5 8 2.6874 3.2712 -0.7430 6 6 2.7585 3.4742 0.5842 7 7 3.1169 4.4861 1.3580 8 6 3.0811 4.4013 2.6695 9 6 2.6709 3.2291 3.3165 10 6 2.6443 3.1569 4.7913 11 8 2.2817 2.1362 5.3435 12 7 3.0221 4.2225 5.5251 13 6 2.9963 4.1540 6.9241 14 6 2.6019 3.0442 7.6887 15 6 2.7247 3.3750 8.9941 16 7 3.1701 4.6474 9.0588 17 6 3.4379 5.4043 10.2842 18 6 4.8547 5.9172 10.2583 19 1 5.4918 5.7013 9.4134 20 6 5.3377 6.6620 11.3132 21 7 4.5603 6.9294 12.3398 22 14 7.0937 7.2983 11.2809 23 1 7.3633 8.0706 12.5203 24 1 8.0341 6.1520 11.1974 25 1 7.2795 8.1782 10.0992 26 7 3.3376 5.1157 7.7493 27 6 2.2810 2.1293 2.5444 28 6 2.3281 2.2608 1.1648 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3786 5.2542 3.2616 35 1 3.3110 5.0368 5.0845 36 1 2.2647 2.0936 7.3026 37 1 2.5032 2.7353 9.8357 38 1 3.3024 4.7550 11.1492 39 1 2.7480 6.2456 10.3497 40 1 3.6483 6.5992 12.3565 41 1 1.9543 1.2097 3.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117717496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 118.160616 kcal Electronic energy + Delta-G solvation = -27495.917291 eV Core-core repulsion = 23380.588432 eV Total energy + Delta-G solvation = -4115.328859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.96113 -42.40798 -41.42731 -39.96554 -36.73529 -36.48686 -35.61685 -33.91906 -33.09480 -32.22093 -32.16160 -31.02500 -28.40653 -27.09438 -25.73765 -25.09042 -24.99450 -23.38177 -22.30418 -21.99700 -21.33874 -19.62725 -19.26691 -19.20931 -19.01655 -18.50431 -17.60546 -17.29886 -16.83821 -16.56429 -15.89881 -15.69393 -15.56349 -15.45408 -15.06111 -15.01833 -14.74235 -14.71159 -14.48248 -14.13455 -13.91091 -13.84154 -13.69890 -13.20951 -12.99936 -12.60653 -12.59393 -12.16394 -12.08153 -12.01783 -11.94839 -11.73334 -11.33203 -11.00356 -10.80435 -10.67902 -10.64529 -10.45792 -9.84911 -9.22638 -8.75896 -6.53969 -0.86285 -0.70953 0.85354 0.91695 0.97573 1.17380 1.38339 1.53141 1.58977 1.80235 2.01357 2.14091 2.42622 2.50168 2.60246 2.78884 3.03000 3.03972 3.33189 3.41720 3.44639 3.73567 3.88039 4.12982 4.16863 4.24838 4.28126 4.38832 4.54527 4.58044 4.69744 4.78706 4.81917 4.83483 4.86786 4.98650 5.04234 5.06404 5.30416 5.56729 5.78965 5.93091 6.08865 6.13758 6.28169 6.42761 6.79340 6.92330 6.96033 7.21470 8.60579 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.001998 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.375212 B =14012.005892 C =14930.821134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.092 3.908 4 N -0.336 5.336 5 O 0.066 5.934 6 C 0.220 3.780 7 N -0.478 5.478 8 C 0.208 3.792 9 C -0.201 4.201 10 C 0.586 3.414 11 O -0.529 6.529 12 N -0.616 5.616 13 C 0.268 3.732 14 C -0.287 4.287 15 C 0.055 3.945 16 N -0.342 5.342 17 C 0.259 3.741 18 C -0.620 4.620 19 H 0.047 0.953 20 C -0.020 4.020 21 N -0.924 5.924 22 Si 1.119 2.881 23 H -0.277 1.277 24 H -0.271 1.271 25 H -0.275 1.275 26 N -0.341 5.341 27 C 0.085 3.915 28 C -0.231 4.231 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.208 0.792 35 H 0.425 0.575 36 H 0.175 0.825 37 H 0.202 0.798 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -14.235 -23.509 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.078 4.078 4 N -0.046 5.046 5 O 0.013 5.987 6 C 0.039 3.961 7 N -0.195 5.195 8 C 0.042 3.958 9 C -0.207 4.207 10 C 0.373 3.627 11 O -0.404 6.404 12 N -0.266 5.266 13 C 0.013 3.987 14 C -0.317 4.317 15 C -0.093 4.093 16 N -0.124 5.124 17 C 0.139 3.861 18 C -0.658 4.658 19 H 0.065 0.935 20 C -0.219 4.219 21 N -0.560 5.560 22 Si 0.940 3.060 23 H -0.202 1.202 24 H -0.196 1.196 25 H -0.200 1.200 26 N -0.172 5.172 27 C 0.057 3.943 28 C -0.237 4.237 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.224 0.776 35 H 0.264 0.736 36 H 0.192 0.808 37 H 0.219 0.781 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.651 -12.171 -23.890 27.401 hybrid contribution -1.595 -1.512 0.136 2.202 sum -7.246 -13.683 -23.754 28.355 Atomic orbital electron populations 1.21760 0.92619 1.04066 1.02112 1.20340 0.97227 0.84740 1.06429 1.24933 0.97906 0.99454 0.85553 1.73529 1.15298 0.91890 1.23843 1.84911 1.67466 1.26668 1.19612 1.22072 0.95583 0.91839 0.86622 1.66497 1.18842 1.28787 1.05384 1.23569 0.88077 0.96703 0.87425 1.20483 1.10314 0.97586 0.92272 1.17836 0.76511 0.82195 0.86160 1.90733 1.46645 1.30674 1.72393 1.42290 1.65282 1.17747 1.01259 1.19308 1.00386 0.93996 0.84976 1.21761 1.17363 1.01929 0.90694 1.23214 0.98913 0.86900 1.00258 1.48579 1.48581 1.10789 1.04454 1.19429 0.97039 0.91281 0.78305 1.22281 0.97586 1.38298 1.07627 0.93494 1.27238 1.09332 0.93989 0.91377 1.70950 1.08831 1.44672 1.31548 0.82888 0.69762 0.76733 0.76651 1.20226 1.19643 1.20017 1.77286 1.28556 1.22912 0.88405 1.21121 0.85654 0.98576 0.88924 1.20962 1.10452 0.96331 0.95932 0.89027 0.92393 0.93169 0.87976 0.86602 0.77596 0.73575 0.80760 0.78147 0.92786 0.96482 0.92941 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.05 -0.38 6.55 29.85 0.20 -0.18 16 3 C 0.09 1.39 6.84 45.02 0.31 1.70 16 4 N -0.34 -6.63 11.94 -43.54 -0.52 -7.15 16 5 O 0.07 1.44 11.12 67.73 0.75 2.20 16 6 C 0.22 4.55 8.75 85.35 0.75 5.30 16 7 N -0.48 -9.55 10.36 -307.27 -3.18 -12.74 16 8 C 0.21 3.24 10.68 85.18 0.91 4.15 16 9 C -0.20 -3.41 5.90 -19.94 -0.12 -3.53 16 10 C 0.59 13.40 7.74 86.74 0.67 14.07 16 11 O -0.53 -14.69 13.55 -3.97 -0.05 -14.74 16 12 N -0.62 -15.71 5.40 -310.24 -1.68 -17.39 16 13 C 0.27 9.60 8.11 133.35 1.08 10.68 16 14 C -0.29 -10.01 9.60 22.11 0.21 -9.80 16 15 C 0.06 2.00 11.43 83.52 0.95 2.96 16 16 N -0.34 -15.20 3.67 -351.84 -1.29 -16.49 16 17 C 0.26 12.82 5.57 85.64 0.48 13.30 16 18 C -0.62 -34.23 9.24 25.60 0.24 -34.00 16 19 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 20 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 21 N -0.92 -53.05 13.65 21.45 0.29 -52.76 16 22 Si 1.12 48.68 29.90 68.60 2.05 50.74 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 N -0.34 -14.83 12.42 -54.47 -0.68 -15.51 16 27 C 0.09 1.28 9.75 22.78 0.22 1.50 16 28 C -0.23 -3.88 6.55 -20.25 -0.13 -4.01 16 29 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.21 1.94 6.39 -2.91 -0.02 1.92 16 35 H 0.42 8.16 6.87 -92.71 -0.64 7.52 16 36 H 0.18 5.65 5.91 -2.91 -0.02 5.63 16 37 H 0.20 5.64 8.06 -2.91 -0.02 5.62 16 38 H 0.05 2.57 7.94 -2.39 -0.02 2.55 16 39 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 40 H 0.26 14.79 7.22 -92.71 -0.67 14.12 16 41 H 0.18 2.03 7.74 -2.91 -0.02 2.01 16 Total: -1.00 -72.96 362.05 3.21 -69.75 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.57 Total: 12.88 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.94 Total: 1.21 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.05 Total: -122.04 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.70 Total: -12.54 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.74 kcal Total: -72.96 3.21 -69.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117717496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.910 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds