Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48492 * 109.47488 * 240.00138 * 3 2 1 5 5 H 1.48498 * 109.46955 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47344 * 119.99655 * 3 2 1 7 7 C 1.37875 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00401 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00136 * 269.99493 * 10 9 7 12 12 C 1.52996 * 109.47198 * 270.00278 * 11 10 9 13 13 N 1.46902 * 109.46980 * 179.97438 * 12 11 10 14 14 C 1.47015 * 111.00009 * 293.63325 * 13 12 11 15 15 C 1.53100 * 109.25969 * 177.60615 * 14 13 12 16 16 O 1.43020 * 109.25371 * 56.84894 * 15 14 13 17 17 C 1.43015 * 113.74045 * 301.33009 * 16 15 14 18 18 C 1.47013 * 110.99990 * 170.00210 * 13 12 11 19 19 C 1.34784 * 119.99971 * 89.99688 * 10 9 7 20 20 O 1.21588 * 119.99858 * 179.97438 * 19 10 9 21 21 N 1.34773 * 119.99935 * 359.72710 * 19 10 9 22 22 C 1.39545 * 119.99746 * 179.97438 * 21 19 10 23 23 C 1.35880 * 127.78108 * 179.97438 * 22 21 19 24 24 N 1.31231 * 115.49301 * 179.97438 * 23 22 21 25 25 N 1.28159 * 118.79619 * 0.02562 * 24 23 22 26 26 S 1.69867 * 106.59763 * 359.72540 * 25 24 23 27 27 H 0.97000 * 120.00290 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47074 * 59.99766 * 9 7 2 29 29 H 1.09008 * 109.46468 * 299.99737 * 9 7 2 30 30 H 1.08997 * 109.46865 * 30.00228 * 11 10 9 31 31 H 1.08998 * 109.47058 * 149.99741 * 11 10 9 32 32 H 1.08997 * 109.47172 * 299.99762 * 12 11 10 33 33 H 1.08998 * 109.47554 * 59.99767 * 12 11 10 34 34 H 1.09006 * 109.50603 * 297.54506 * 14 13 12 35 35 H 1.09003 * 109.50663 * 57.67164 * 14 13 12 36 36 H 1.08994 * 109.50511 * 296.91476 * 15 14 13 37 37 H 1.08995 * 109.54235 * 176.80143 * 15 14 13 38 38 H 1.08996 * 109.50161 * 298.73680 * 17 16 15 39 39 H 1.09002 * 109.54009 * 178.63053 * 17 16 15 40 40 H 1.08999 * 109.50620 * 302.32609 * 18 13 12 41 41 H 1.08999 * 109.51226 * 62.41126 * 18 13 12 42 42 H 0.97004 * 120.00018 * 359.97438 * 21 19 10 43 43 H 1.07997 * 122.25898 * 0.03115 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 1.7497 -5.2999 -1.7128 13 7 2.2276 -5.8573 -2.9852 14 6 2.1097 -4.8715 -4.0696 15 6 2.6725 -5.4715 -5.3608 16 8 1.9803 -6.6875 -5.6568 17 6 2.0747 -7.6703 -4.6221 18 6 1.5058 -7.0925 -3.3235 19 6 2.6402 -4.1253 1.1659 20 8 3.4300 -5.0498 1.1661 21 7 2.2057 -3.6100 2.3330 22 6 2.6578 -4.1412 3.5415 23 6 2.3272 -3.7477 4.7994 24 7 2.8984 -4.4209 5.7703 25 7 3.7033 -5.3723 5.4715 26 16 3.7555 -5.4490 3.7753 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.6883 -3.3870 -2.0293 31 1 3.6894 -4.5589 -1.1391 32 1 1.7414 -6.0819 -0.9536 33 1 0.7403 -4.9099 -1.8438 34 1 1.0605 -4.6140 -4.2149 35 1 2.6724 -3.9750 -3.8093 36 1 3.7348 -5.6793 -5.2327 37 1 2.5359 -4.7661 -6.1804 38 1 3.1196 -7.9420 -4.4727 39 1 1.5056 -8.5552 -4.9069 40 1 1.6277 -7.8173 -2.5186 41 1 0.4469 -6.8708 -3.4562 42 1 1.5786 -2.8699 2.3328 43 1 1.6399 -2.9361 4.9875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192357841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = -8.063594 kcal Electronic energy + Delta-G solvation = -27703.034006 eV Core-core repulsion = 23717.675606 eV Total energy + Delta-G solvation = -3985.358400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87799 -40.97301 -40.47589 -37.78706 -36.59656 -36.32062 -34.63186 -32.24630 -31.87778 -30.84101 -29.15248 -27.67561 -26.63239 -25.09087 -24.99546 -23.63123 -22.46039 -21.72741 -21.31801 -19.54163 -19.15494 -18.66066 -18.20627 -17.66377 -17.12148 -16.94176 -16.64140 -16.51649 -16.26494 -15.99836 -15.97396 -15.60136 -15.38990 -15.12317 -14.66131 -14.43595 -14.18577 -13.70140 -13.53241 -13.35272 -13.18441 -12.95433 -12.79953 -12.75371 -12.67227 -12.48846 -12.31417 -12.18981 -11.91469 -11.82156 -11.74186 -11.45256 -10.79758 -10.70995 -10.64250 -10.56915 -9.96515 -9.52816 -9.38104 -8.26783 -6.41961 -0.84600 -0.14145 0.65417 1.22075 1.39497 1.41573 1.45928 1.51082 1.93999 2.35041 2.54209 2.89694 3.01536 3.05411 3.41717 3.65262 3.81116 3.91139 3.99365 4.07686 4.20574 4.31117 4.38141 4.45742 4.53803 4.58671 4.67877 4.70175 4.74666 4.82409 4.89597 4.94276 4.98347 5.01341 5.07746 5.32531 5.64125 5.70417 5.89888 5.92400 5.93844 6.17871 6.46528 6.73420 6.76228 7.14994 7.32429 8.77864 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007370 B = 0.004114 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3798.253312 B = 6804.068252 C =10083.956324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.033 3.967 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.250 3.750 10 N -0.595 5.595 11 C 0.144 3.856 12 C 0.057 3.943 13 N -0.537 5.537 14 C 0.011 3.989 15 C 0.066 3.934 16 O -0.404 6.404 17 C 0.065 3.935 18 C 0.017 3.983 19 C 0.696 3.304 20 O -0.590 6.590 21 N -0.616 5.616 22 C 0.073 3.927 23 C -0.084 4.084 24 N -0.214 5.214 25 N -0.283 5.283 26 S 0.334 5.666 27 H 0.270 0.730 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.435 0.565 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -9.626 -5.153 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.130 3.870 10 N -0.327 5.327 11 C 0.021 3.979 12 C -0.072 4.072 13 N -0.263 5.263 14 C -0.117 4.117 15 C -0.010 4.010 16 O -0.323 6.323 17 C -0.011 4.011 18 C -0.111 4.111 19 C 0.397 3.603 20 O -0.469 6.469 21 N -0.267 5.267 22 C -0.165 4.165 23 C -0.253 4.253 24 N -0.080 5.080 25 N -0.265 5.265 26 S 0.465 5.535 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.278 0.722 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.689 -11.570 -4.659 13.006 hybrid contribution -1.949 3.086 -0.259 3.659 sum 1.740 -8.483 -4.918 9.959 Atomic orbital electron populations 1.69962 1.06994 1.28464 1.49657 1.25499 0.95398 1.01862 0.94129 0.85729 0.78480 0.79410 0.78809 1.19937 1.20950 1.19914 1.21588 0.93382 0.91242 1.52833 0.92706 1.19170 0.87248 0.82560 0.98064 1.47296 1.46731 1.35202 1.03508 1.21226 0.98052 0.95326 0.83339 1.22277 0.96280 0.97210 0.91462 1.62148 1.56311 1.05642 1.02173 1.22929 1.00319 0.96144 0.92289 1.22753 0.96129 0.86127 0.96025 1.87948 1.75286 1.26060 1.43023 1.22780 1.01687 0.91241 0.85425 1.22852 0.95982 0.92515 0.99722 1.15932 0.81161 0.82198 0.81049 1.90862 1.38704 1.31897 1.85405 1.42126 1.47035 1.36841 1.00674 1.24010 1.01225 1.00760 0.90529 1.23473 1.09535 1.07919 0.84411 1.70909 1.04195 1.02178 1.30709 1.82168 1.20885 1.18309 1.05117 1.85492 1.35681 1.24974 1.07329 0.92131 0.95048 0.95036 0.89907 0.90061 0.91042 0.95185 0.94731 0.88997 0.91647 0.86831 0.91770 0.86456 0.88755 0.94586 0.72210 0.76512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.09 13.29 21.45 0.28 -44.80 16 2 C 0.03 1.55 5.46 84.65 0.46 2.01 16 3 Si 0.95 38.33 29.54 68.60 2.03 40.35 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.55 -25.06 9.39 25.60 0.24 -24.82 16 8 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 9 C 0.25 10.09 4.92 85.63 0.42 10.52 16 10 N -0.59 -21.17 2.46 -844.19 -2.07 -23.25 16 11 C 0.14 4.55 5.34 86.38 0.46 5.01 16 12 C 0.06 1.60 5.28 86.30 0.46 2.05 16 13 N -0.54 -13.23 4.73 -895.21 -4.23 -17.47 16 14 C 0.01 0.26 5.44 86.31 0.47 0.73 16 15 C 0.07 1.31 7.01 72.02 0.50 1.81 16 16 O -0.40 -9.00 10.83 -148.98 -1.61 -10.62 16 17 C 0.07 1.19 7.01 72.01 0.50 1.69 16 18 C 0.02 0.36 5.64 86.31 0.49 0.85 16 19 C 0.70 24.93 8.24 179.05 1.48 26.40 16 20 O -0.59 -22.34 13.73 -3.99 -0.05 -22.39 16 21 N -0.62 -19.98 5.29 -321.64 -1.70 -21.68 16 22 C 0.07 2.26 7.34 82.92 0.61 2.87 16 23 C -0.08 -2.36 11.38 84.23 0.96 -1.40 16 24 N -0.21 -6.72 11.65 -60.07 -0.70 -7.42 16 25 N -0.28 -9.19 13.33 37.02 0.49 -8.70 16 26 S 0.33 10.41 21.29 -56.49 -1.20 9.20 16 27 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 28 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.03 1.28 6.37 -2.38 -0.02 1.27 16 30 H 0.08 2.61 6.44 -2.39 -0.02 2.60 16 31 H 0.08 2.67 7.42 -2.39 -0.02 2.65 16 32 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 33 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 2.11 6.38 -2.39 -0.02 2.10 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.43 13.72 6.56 -92.71 -0.61 13.12 16 43 H 0.22 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -54.57 368.42 -1.28 -55.86 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.44 Total: 23.18 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 7.05 Total: 27.73 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -7.93 Total: -123.32 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.67 Total: -33.01 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 16 Polarization: 10.41 SS G_CDS: -1.20 Total: 9.20 kcal Total: -54.57 -1.28 -55.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192357841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.792 kcal (2) G-P(sol) polarization free energy of solvation -54.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds