Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40087 * 125.97295 * 180.15427 * 4 3 2 6 6 C 1.34778 * 120.00322 * 0.24593 * 5 4 3 7 7 O 1.21581 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.47684 * 119.99901 * 179.97438 * 6 5 4 9 9 C 1.40027 * 120.50464 * 359.97438 * 8 6 5 10 10 N 1.31468 * 121.52022 * 179.97438 * 9 8 6 11 11 C 1.32328 * 121.78397 * 0.02562 * 10 9 8 12 12 O 1.34455 * 134.99149 * 179.97438 * 11 10 9 13 13 N 1.20862 * 113.07382 * 180.02562 * 12 11 10 14 14 C 1.29999 * 113.52659 * 359.97438 * 13 12 11 15 15 C 1.50707 * 127.39445 * 180.02562 * 14 13 12 16 16 C 1.41231 * 119.93702 * 359.97438 * 11 10 9 17 17 C 1.38662 * 120.05404 * 359.74470 * 16 11 10 18 18 N 1.31229 * 108.04425 * 0.38299 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97289 * 359.95817 * 19 2 1 21 21 C 1.50699 * 109.47148 * 90.00237 * 20 19 2 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99909 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00311 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46664 * 59.99944 * 25 23 21 27 27 H 1.48497 * 109.47492 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47052 * 300.00432 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99972 * 180.24398 * 5 4 3 34 34 H 1.08004 * 119.23890 * 359.95664 * 9 8 6 35 35 H 1.09002 * 109.47123 * 269.97881 * 15 14 13 36 36 H 1.08996 * 109.47577 * 29.97656 * 15 14 13 37 37 H 1.08998 * 109.46699 * 149.97898 * 15 14 13 38 38 H 1.08004 * 121.14192 * 180.27897 * 17 16 11 39 39 H 1.09004 * 109.46567 * 210.00196 * 20 19 2 40 40 H 1.09001 * 109.46954 * 329.99540 * 20 19 2 41 41 H 0.96998 * 119.99415 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7730 1.4744 0.0066 6 6 4.6363 2.8153 0.0131 7 8 3.5271 3.3132 0.0151 8 6 5.8338 3.6796 0.0179 9 6 7.1162 3.1174 0.0162 10 7 8.1957 3.8678 0.0198 11 6 8.1259 5.1892 0.0257 12 8 9.0253 6.1886 0.0308 13 7 8.5157 7.2845 0.0359 14 6 7.2161 7.2524 0.0348 15 6 6.2716 8.4268 0.0394 16 6 6.8665 5.8285 0.0277 17 6 5.7041 5.0727 0.0182 18 7 3.6336 -0.6578 -0.0041 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0126 21 6 1.6942 -2.9554 -1.4357 22 1 1.9098 -2.2836 -2.2533 23 6 1.2766 -4.2438 -1.6938 24 7 1.0146 -5.0620 -0.6980 25 14 1.0829 -4.8272 -3.4577 26 1 2.3882 -4.7259 -4.1587 27 1 0.6263 -6.2402 -3.4645 28 1 0.0810 -3.9794 -4.1523 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 0.0004 33 1 5.6580 1.0772 0.0047 34 1 7.2210 2.0424 0.0121 35 1 6.0428 8.7050 1.0682 36 1 6.7378 9.2702 -0.4698 37 1 5.3509 8.1546 -0.4767 38 1 4.7319 5.5432 0.0151 39 1 2.5848 -3.1072 0.4978 40 1 0.8916 -2.5583 0.5015 41 1 0.7211 -5.9685 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271112380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = 119.582031 kcal Electronic energy + Delta-G solvation = -27640.968898 eV Core-core repulsion = 23525.701676 eV Total energy + Delta-G solvation = -4115.267222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.92031 -42.40157 -41.42133 -39.94485 -36.50131 -36.02214 -35.35132 -33.74467 -33.10136 -32.65313 -32.25661 -29.79977 -28.69018 -27.87260 -26.91980 -25.53326 -24.89873 -23.25162 -22.33867 -21.40080 -21.17138 -19.45956 -19.20180 -19.04104 -18.76527 -18.10758 -17.47629 -17.17711 -16.87693 -16.66347 -16.17354 -15.71512 -15.48085 -15.10640 -14.71877 -14.71081 -14.47737 -14.33754 -14.27618 -14.25497 -13.78995 -13.73743 -13.61656 -13.56172 -13.14809 -12.83021 -12.66633 -12.63716 -12.23551 -12.15792 -12.06083 -11.62649 -11.38412 -11.29868 -10.78442 -10.71494 -10.62405 -10.40607 -9.58890 -9.15161 -8.31426 -6.48690 -0.83497 -0.68295 0.88927 0.95477 1.00446 1.22960 1.38753 1.41070 1.42479 1.50660 2.04627 2.19000 2.37557 2.45936 2.65739 2.84092 2.98707 3.07722 3.36725 3.45070 3.47610 3.78571 3.89071 4.16316 4.26687 4.44518 4.48207 4.59656 4.67769 4.74333 4.76442 4.80373 4.85932 4.89576 4.99504 5.01593 5.14441 5.15457 5.27517 5.55094 5.82643 5.90766 6.14241 6.18194 6.26767 6.63323 6.84304 6.95232 7.03622 7.22230 8.74299 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002033 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.791380 B =13771.983848 C =14341.088106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.295 4.295 4 C 0.273 3.727 5 N -0.616 5.616 6 C 0.584 3.416 7 O -0.529 6.529 8 C -0.201 4.201 9 C 0.208 3.792 10 N -0.479 5.479 11 C 0.220 3.780 12 O 0.064 5.936 13 N -0.341 5.341 14 C 0.090 3.910 15 C -0.082 4.082 16 C -0.234 4.234 17 C 0.086 3.914 18 N -0.354 5.354 19 N -0.341 5.341 20 C 0.275 3.725 21 C -0.552 4.552 22 H 0.051 0.949 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.275 1.275 28 H -0.265 1.265 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.425 0.575 34 H 0.208 0.792 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.184 0.816 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 24.129 2.339 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.325 4.325 4 C 0.019 3.981 5 N -0.265 5.265 6 C 0.372 3.628 7 O -0.404 6.404 8 C -0.207 4.207 9 C 0.043 3.957 10 N -0.196 5.196 11 C 0.038 3.962 12 O 0.012 5.988 13 N -0.053 5.053 14 C -0.080 4.080 15 C -0.139 4.139 16 C -0.240 4.240 17 C 0.058 3.942 18 N -0.184 5.184 19 N -0.124 5.124 20 C 0.156 3.844 21 C -0.591 4.591 22 H 0.069 0.931 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.793 3.207 26 H -0.201 1.201 27 H -0.199 1.199 28 H -0.190 1.190 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.190 0.810 33 H 0.264 0.736 34 H 0.224 0.776 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.201 0.799 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.118 23.737 2.399 25.541 hybrid contribution -1.042 -0.608 -0.701 1.395 sum 8.076 23.129 1.698 24.558 Atomic orbital electron populations 1.20512 0.85424 1.04421 1.04121 1.21768 0.96687 0.86450 0.99389 1.21457 0.89685 1.00068 1.21305 1.19165 0.88439 0.89164 1.01333 1.42282 1.07387 1.04719 1.72129 1.17852 0.88695 0.80535 0.75747 1.90737 1.26744 1.74078 1.48890 1.20492 0.93711 0.94367 1.12144 1.23568 0.84403 1.00908 0.86865 1.66488 1.33991 1.01608 1.17558 1.22093 0.87558 0.90427 0.96103 1.84905 1.32201 1.08227 1.73464 1.73540 1.12197 1.00317 1.19211 1.25002 0.90763 0.94602 0.97597 1.20582 0.96264 0.91215 1.05800 1.20998 0.95324 0.95030 1.12630 1.21134 0.98724 0.90626 0.83737 1.77189 1.00122 1.09925 1.31154 1.48798 1.01732 1.07567 1.54287 1.19245 0.94958 0.72452 0.97712 1.21407 1.47515 0.98312 0.91826 0.93116 1.25715 0.94038 0.95971 1.02100 1.69995 1.45065 1.07394 1.33104 0.85439 0.78739 0.77632 0.78897 1.20100 1.19945 1.18994 0.88892 0.91579 0.87772 0.81040 0.73569 0.77569 0.87378 0.88605 0.87244 0.79901 0.95679 0.92993 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 9.89 71.24 0.70 -1.98 16 2 C 0.09 3.44 6.92 41.38 0.29 3.72 16 3 C -0.29 -10.91 9.52 22.11 0.21 -10.70 16 4 C 0.27 10.05 8.11 133.35 1.08 11.13 16 5 N -0.62 -15.96 5.40 -310.25 -1.68 -17.63 16 6 C 0.58 13.66 7.74 86.74 0.67 14.33 16 7 O -0.53 -15.10 13.55 -3.97 -0.05 -15.15 16 8 C -0.20 -3.46 5.90 -19.94 -0.12 -3.57 16 9 C 0.21 3.26 10.68 85.18 0.91 4.17 16 10 N -0.48 -9.60 10.36 -307.27 -3.18 -12.79 16 11 C 0.22 4.55 8.75 85.35 0.75 5.29 16 12 O 0.06 1.40 11.12 67.71 0.75 2.15 16 13 N -0.34 -6.69 11.94 -43.54 -0.52 -7.21 16 14 C 0.09 1.31 7.58 45.02 0.34 1.66 16 15 C -0.08 -0.46 10.50 71.24 0.75 0.29 16 16 C -0.23 -3.90 6.55 -20.25 -0.13 -4.03 16 17 C 0.09 1.28 9.75 22.78 0.22 1.51 16 18 N -0.35 -15.53 12.59 -54.48 -0.69 -16.22 16 19 N -0.34 -15.70 3.59 -338.44 -1.22 -16.91 16 20 C 0.28 14.06 5.81 85.63 0.50 14.56 16 21 C -0.55 -30.09 9.39 25.60 0.24 -29.85 16 22 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 23 C 0.02 1.23 5.46 84.65 0.46 1.69 16 24 N -0.92 -50.88 13.29 21.45 0.28 -50.59 16 25 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.29 7.71 -2.39 -0.02 2.27 16 31 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.17 5.92 5.91 -2.91 -0.02 5.90 16 33 H 0.42 8.16 6.87 -92.71 -0.64 7.52 16 34 H 0.21 1.93 6.39 -2.91 -0.02 1.91 16 35 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.18 2.01 7.74 -2.91 -0.02 1.99 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 2.63 7.65 -2.39 -0.02 2.61 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -71.66 362.48 3.08 -68.58 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.48 Total: 13.39 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.87 Total: 8.19 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -7.00 Total: -121.35 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.70 Total: -13.00 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.66 3.08 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271112380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.163 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds