Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47280 * 2 1 4 4 H 1.08996 * 109.46818 * 55.00038 * 3 2 1 5 5 C 1.50702 * 109.47134 * 175.00209 * 3 2 1 6 6 H 1.07997 * 119.99986 * 120.00166 * 5 3 2 7 7 C 1.37876 * 119.99727 * 299.99456 * 5 3 2 8 8 N 1.31515 * 119.99975 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00300 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.47337 * 89.99843 * 9 7 5 11 11 H 1.48498 * 109.47486 * 209.99641 * 9 7 5 12 12 H 1.48499 * 109.47155 * 329.99822 * 9 7 5 13 13 N 1.46496 * 109.46662 * 294.99980 * 3 2 1 14 14 C 1.34774 * 120.00029 * 85.00091 * 13 3 2 15 15 O 1.21282 * 119.99905 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00271 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47103 * 84.99866 * 16 14 13 18 18 O 1.42906 * 109.46702 * 324.99690 * 16 14 13 19 19 C 1.52997 * 109.47238 * 205.00060 * 16 14 13 20 20 S 1.81401 * 109.47039 * 184.99946 * 19 16 14 21 21 C 1.76204 * 102.99852 * 179.97438 * 20 19 16 22 22 C 1.39004 * 120.06739 * 359.72266 * 21 20 19 23 23 C 1.38068 * 119.96981 * 179.76776 * 22 21 20 24 24 C 1.38286 * 120.10388 * 0.51277 * 23 22 21 25 25 C 1.38512 * 120.13350 * 359.73714 * 24 23 22 26 26 F 1.35105 * 119.98592 * 180.02562 * 25 24 23 27 27 C 1.38322 * 120.02918 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.46874 * 299.99963 * 1 2 3 29 29 H 1.08994 * 109.47023 * 59.99994 * 1 2 3 30 30 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47567 * 239.99764 * 2 1 3 32 32 H 1.09005 * 109.47490 * 119.99863 * 2 1 3 33 33 H 0.96998 * 120.00424 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99981 * 264.99238 * 13 3 2 35 35 H 1.08992 * 109.47280 * 59.99899 * 17 16 14 36 36 H 1.09002 * 109.46777 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47140 * 300.00046 * 17 16 14 38 38 H 0.96696 * 113.99911 * 300.00170 * 18 16 14 39 39 H 1.09002 * 109.47196 * 304.99679 * 19 16 14 40 40 H 1.09001 * 109.47630 * 64.99774 * 19 16 14 41 41 H 1.08006 * 120.01826 * 359.97438 * 22 21 20 42 42 H 1.08007 * 119.95001 * 180.23184 * 23 22 21 43 43 H 1.08009 * 119.93671 * 179.76921 * 24 23 22 44 44 H 1.08005 * 120.05071 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3272 2.2635 11 1 3.7937 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -0.5192 2.2952 -3.6258 18 8 1.1798 3.9691 -3.2356 19 6 -1.0361 4.3913 -2.3682 20 16 -1.6217 5.0987 -3.9325 21 6 -2.8310 6.2691 -3.4101 22 6 -3.1050 6.4304 -2.0569 23 6 -4.0495 7.3515 -1.6496 24 6 -4.7312 8.1065 -2.5863 25 6 -4.4653 7.9455 -3.9361 26 9 -5.1327 8.6851 -4.8487 27 6 -3.5167 7.0279 -4.3501 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8771 0.4820 2.1129 34 1 2.2720 2.1231 -1.9978 35 1 -1.3911 1.8142 -3.1825 36 1 -0.8070 2.7828 -4.5572 37 1 0.2450 1.5452 -3.8297 38 1 1.5849 4.6438 -2.6737 39 1 -1.8713 3.9260 -1.8447 40 1 -0.6133 5.1815 -1.7478 41 1 -2.5770 5.8380 -1.3243 42 1 -4.2594 7.4793 -0.5978 43 1 -5.4722 8.8236 -2.2648 44 1 -3.3087 6.9024 -5.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285944124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -106.966594 kcal Electronic energy + Delta-G solvation = -27226.564619 eV Core-core repulsion = 23184.704750 eV Total energy + Delta-G solvation = -4041.859869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22019 -40.07765 -39.09191 -37.17725 -35.48432 -32.46185 -32.29487 -31.54714 -31.53083 -30.89123 -27.96994 -27.44337 -23.96684 -23.45219 -22.90605 -22.50708 -20.48397 -19.70567 -18.64030 -18.46429 -16.83640 -16.73585 -16.46987 -16.09108 -15.94414 -15.88993 -15.50857 -15.25090 -15.03838 -14.37331 -14.21967 -13.83038 -13.65483 -13.48707 -13.28969 -13.07065 -12.70671 -12.58660 -12.39754 -12.24495 -12.12691 -11.98883 -11.88740 -11.84941 -11.59952 -11.20644 -10.98371 -10.92650 -10.69431 -10.36079 -10.11593 -10.01132 -9.62963 -9.31841 -9.19037 -9.08599 -8.83098 -8.21223 -7.68067 -6.27660 -4.30951 0.68822 0.81591 1.10346 2.08395 2.89852 3.15101 3.17269 3.29600 3.32746 3.64037 3.93375 4.01149 4.24419 4.36365 4.39637 4.56570 4.61876 4.70100 4.98301 5.05234 5.07682 5.19171 5.25068 5.37283 5.60768 5.62976 5.66718 5.68309 5.78979 5.86431 5.93549 5.93834 6.01882 6.08029 6.45822 6.55176 6.60180 6.73217 6.84049 7.10898 7.18246 7.35884 7.40526 8.03360 8.40949 8.64559 8.76899 9.32231 10.84257 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.002414 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.138917 B =11597.959461 C =11916.299152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.241 3.759 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.684 5.684 14 C 0.483 3.517 15 O -0.545 6.545 16 C 0.136 3.864 17 C -0.140 4.140 18 O -0.541 6.541 19 C -0.129 4.129 20 S -0.065 6.065 21 C -0.063 4.063 22 C -0.146 4.146 23 C -0.068 4.068 24 C -0.165 4.165 25 C 0.116 3.884 26 F -0.138 7.138 27 C -0.140 4.140 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.402 0.598 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.385 0.615 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.403 10.318 -9.836 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.138 3.862 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.332 5.332 14 C 0.265 3.735 15 O -0.425 6.425 16 C 0.090 3.910 17 C -0.198 4.198 18 O -0.347 6.347 19 C -0.278 4.278 20 S 0.181 5.819 21 C -0.177 4.177 22 C -0.170 4.170 23 C -0.088 4.088 24 C -0.186 4.186 25 C 0.095 3.905 26 F -0.117 7.117 27 C -0.165 4.165 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.237 0.763 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.444 9.475 -10.688 22.545 hybrid contribution -0.523 0.390 2.095 2.194 sum -17.966 9.866 -8.593 22.225 Atomic orbital electron populations 1.21878 0.96961 0.99167 1.02122 1.22296 0.94334 0.99891 1.01287 1.19212 0.95809 0.88576 0.82591 0.93319 1.21028 0.88467 1.40074 1.07921 0.90064 1.24833 0.94863 0.95110 0.97654 1.69861 1.08672 1.44267 1.29823 0.86913 0.80885 0.80009 0.80967 1.20197 1.22121 1.18552 1.46167 1.14504 1.54338 1.18155 1.20809 0.83373 0.80461 0.88879 1.90690 1.51376 1.60434 1.39958 1.21118 0.85434 0.91742 0.92670 1.21805 1.01761 0.97458 0.98752 1.86591 1.43642 1.57292 1.47174 1.24372 1.03527 1.01796 0.98073 1.85684 1.42236 1.41918 1.12021 1.21824 1.00045 0.99946 0.95856 1.21361 1.00464 1.00815 0.94326 1.20954 0.94207 0.93903 0.99758 1.21158 1.03200 1.03086 0.91186 1.17519 0.93695 0.92703 0.86568 1.91513 1.78831 1.75020 1.66290 1.20639 0.97871 0.97647 1.00318 0.92902 0.93024 0.94842 0.92169 0.92669 0.92205 0.76335 0.90174 0.90121 0.90546 0.76632 0.86898 0.88589 0.84861 0.84573 0.84581 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 37.16 0.32 -2.41 16 2 C -0.14 -2.95 5.11 -26.73 -0.14 -3.09 16 3 C 0.24 5.39 1.83 -69.08 -0.13 5.26 16 4 H 0.05 1.20 6.64 -51.93 -0.34 0.86 16 5 C -0.54 -13.92 9.31 -34.44 -0.32 -14.24 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 9 Si 0.88 21.08 24.41 -169.99 -4.15 16.93 16 10 H -0.28 -6.39 6.83 56.52 0.39 -6.01 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.13 6.53 56.52 0.37 -5.77 16 13 N -0.68 -12.42 4.93 -54.93 -0.27 -12.69 16 14 C 0.48 7.91 5.26 -10.98 -0.06 7.85 16 15 O -0.55 -10.40 13.12 5.56 0.07 -10.33 16 16 C 0.14 1.70 1.00 -91.77 -0.09 1.60 16 17 C -0.14 -1.60 8.51 37.16 0.32 -1.28 16 18 O -0.54 -6.41 12.05 -35.23 -0.42 -6.84 16 19 C -0.13 -1.44 3.19 37.16 0.12 -1.32 16 20 S -0.07 -0.69 19.96 -107.50 -2.15 -2.83 16 21 C -0.06 -0.66 6.11 -39.05 -0.24 -0.90 16 22 C -0.15 -1.41 9.36 -39.36 -0.37 -1.78 16 23 C -0.07 -0.57 10.04 -39.63 -0.40 -0.97 16 24 C -0.16 -1.39 10.02 -39.46 -0.40 -1.79 16 25 C 0.12 1.14 7.30 -39.45 -0.29 0.85 16 26 F -0.14 -1.41 17.27 2.25 0.04 -1.38 16 27 C -0.14 -1.40 9.77 -39.30 -0.38 -1.78 16 28 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 29 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.24 3.21 -51.93 -0.17 1.07 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.40 6.79 7.98 -40.82 -0.33 6.47 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.85 6.72 -51.93 -0.35 0.50 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.39 3.72 9.04 45.56 0.41 4.14 16 39 H 0.11 1.32 7.28 -51.92 -0.38 0.94 16 40 H 0.10 1.03 7.76 -51.92 -0.40 0.63 16 41 H 0.13 1.25 5.88 -52.48 -0.31 0.94 16 42 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -29.91 367.96 -7.84 -37.75 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.13 Total: 10.70 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.15 Total: -11.91 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.50 Total: -37.64 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.35 Total: -17.16 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.15 Total: 16.93 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.15 Total: -2.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.91 -7.84 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285944124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.219 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds