Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47280 * 2 1 4 4 H 1.08996 * 109.46818 * 55.00038 * 3 2 1 5 5 C 1.50702 * 109.47134 * 175.00209 * 3 2 1 6 6 H 1.07997 * 119.99986 * 120.00166 * 5 3 2 7 7 C 1.37876 * 119.99727 * 299.99456 * 5 3 2 8 8 N 1.31515 * 119.99975 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00300 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.47337 * 89.99843 * 9 7 5 11 11 H 1.48498 * 109.47486 * 209.99641 * 9 7 5 12 12 H 1.48499 * 109.47155 * 329.99822 * 9 7 5 13 13 N 1.46496 * 109.46662 * 294.99980 * 3 2 1 14 14 C 1.34774 * 120.00029 * 85.00091 * 13 3 2 15 15 O 1.21282 * 119.99905 * 359.97438 * 14 13 3 16 16 C 1.50706 * 120.00271 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47103 * 84.99866 * 16 14 13 18 18 O 1.42906 * 109.46702 * 324.99690 * 16 14 13 19 19 C 1.52997 * 109.47238 * 205.00060 * 16 14 13 20 20 S 1.81401 * 109.47039 * 184.99946 * 19 16 14 21 21 C 1.76204 * 102.99852 * 179.97438 * 20 19 16 22 22 C 1.39004 * 120.06739 * 359.72266 * 21 20 19 23 23 C 1.38068 * 119.96981 * 179.76776 * 22 21 20 24 24 C 1.38286 * 120.10388 * 0.51277 * 23 22 21 25 25 C 1.38512 * 120.13350 * 359.73714 * 24 23 22 26 26 F 1.35105 * 119.98592 * 180.02562 * 25 24 23 27 27 C 1.38322 * 120.02918 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.46874 * 299.99963 * 1 2 3 29 29 H 1.08994 * 109.47023 * 59.99994 * 1 2 3 30 30 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47567 * 239.99764 * 2 1 3 32 32 H 1.09005 * 109.47490 * 119.99863 * 2 1 3 33 33 H 0.96998 * 120.00424 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99981 * 264.99238 * 13 3 2 35 35 H 1.08992 * 109.47280 * 59.99899 * 17 16 14 36 36 H 1.09002 * 109.46777 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47140 * 300.00046 * 17 16 14 38 38 H 0.96696 * 113.99911 * 300.00170 * 18 16 14 39 39 H 1.09002 * 109.47196 * 304.99679 * 19 16 14 40 40 H 1.09001 * 109.47630 * 64.99774 * 19 16 14 41 41 H 1.08006 * 120.01826 * 359.97438 * 22 21 20 42 42 H 1.08007 * 119.95001 * 180.23184 * 23 22 21 43 43 H 1.08009 * 119.93671 * 179.76921 * 24 23 22 44 44 H 1.08005 * 120.05071 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3272 2.2635 11 1 3.7937 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -0.5192 2.2952 -3.6258 18 8 1.1798 3.9691 -3.2356 19 6 -1.0361 4.3913 -2.3682 20 16 -1.6217 5.0987 -3.9325 21 6 -2.8310 6.2691 -3.4101 22 6 -3.1050 6.4304 -2.0569 23 6 -4.0495 7.3515 -1.6496 24 6 -4.7312 8.1065 -2.5863 25 6 -4.4653 7.9455 -3.9361 26 9 -5.1327 8.6851 -4.8487 27 6 -3.5167 7.0279 -4.3501 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8771 0.4820 2.1129 34 1 2.2720 2.1231 -1.9978 35 1 -1.3911 1.8142 -3.1825 36 1 -0.8070 2.7828 -4.5572 37 1 0.2450 1.5452 -3.8297 38 1 1.5849 4.6438 -2.6737 39 1 -1.8713 3.9260 -1.8447 40 1 -0.6133 5.1815 -1.7478 41 1 -2.5770 5.8380 -1.3243 42 1 -4.2594 7.4793 -0.5978 43 1 -5.4722 8.8236 -2.2648 44 1 -3.3087 6.9024 -5.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285944124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -126.869953 kcal Electronic energy + Delta-G solvation = -27227.427694 eV Core-core repulsion = 23184.704750 eV Total energy + Delta-G solvation = -4042.722943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97473 -41.38906 -39.78991 -38.38351 -37.07944 -34.39934 -33.29897 -33.10130 -32.23695 -31.63412 -29.54830 -28.57497 -25.32636 -24.37546 -24.07615 -23.57380 -21.96946 -21.11216 -19.84743 -19.35728 -18.37285 -17.70171 -17.46848 -17.37344 -16.90173 -16.67964 -16.57136 -16.45330 -16.37912 -15.77457 -15.31898 -15.00566 -14.87194 -14.50200 -14.33854 -14.23359 -13.97982 -13.69751 -13.66426 -13.47180 -13.39858 -13.29104 -13.01060 -12.88765 -12.76753 -12.71943 -12.45163 -12.32681 -11.92529 -11.85627 -11.37864 -11.24284 -11.18203 -10.87267 -10.82831 -10.43159 -9.91414 -9.80537 -8.46824 -8.38167 -6.43980 -0.02796 0.10858 0.26435 1.25950 1.26855 1.34823 1.43635 1.57830 2.25055 2.33771 2.44893 2.97450 3.04961 3.22238 3.38812 3.62932 3.72897 3.76350 3.96786 4.01029 4.22992 4.29870 4.30829 4.32721 4.45903 4.47573 4.52859 4.73036 4.76008 4.83251 4.93371 4.96939 5.01500 5.10572 5.11240 5.12846 5.22261 5.26309 5.39000 5.51314 5.62348 5.77381 6.10238 6.44711 6.58976 6.84431 7.17346 7.36249 8.76969 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.002414 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.138917 B =11597.959461 C =11916.299152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.027 0.973 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.257 1.257 13 N -0.686 5.686 14 C 0.486 3.514 15 O -0.569 6.569 16 C 0.150 3.850 17 C -0.141 4.141 18 O -0.543 6.543 19 C -0.124 4.124 20 S -0.061 6.061 21 C -0.078 4.078 22 C -0.154 4.154 23 C -0.067 4.067 24 C -0.160 4.160 25 C 0.103 3.897 26 F -0.143 7.143 27 C -0.148 4.148 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.394 0.606 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.541 10.518 -10.097 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.045 0.955 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.181 1.181 13 N -0.335 5.335 14 C 0.270 3.730 15 O -0.449 6.449 16 C 0.104 3.896 17 C -0.198 4.198 18 O -0.350 6.350 19 C -0.273 4.273 20 S 0.186 5.814 21 C -0.191 4.191 22 C -0.178 4.178 23 C -0.087 4.087 24 C -0.181 4.181 25 C 0.082 3.918 26 F -0.122 7.122 27 C -0.173 4.173 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.245 0.755 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.152 0.848 42 H 0.179 0.821 43 H 0.176 0.824 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.601 9.693 -10.976 24.467 hybrid contribution 0.126 0.445 2.114 2.164 sum -19.475 10.138 -8.861 23.676 Atomic orbital electron populations 1.21773 0.94965 1.00692 1.01742 1.22225 0.96068 0.98490 1.01013 1.18826 0.93180 0.89718 0.83814 0.95550 1.21282 0.90413 1.38547 1.06825 0.92615 1.25555 0.95701 0.95920 0.99900 1.69978 1.10330 1.46108 1.30849 0.86040 0.79396 0.79918 0.78281 1.18766 1.22295 1.18131 1.45990 1.15623 1.54899 1.16996 1.21460 0.82117 0.79479 0.89945 1.90679 1.51864 1.61080 1.41302 1.20940 0.85916 0.92174 0.90573 1.21856 1.01879 0.97196 0.98892 1.86592 1.43586 1.57579 1.47278 1.24246 1.02903 1.01469 0.98714 1.85601 1.42571 1.42212 1.11060 1.21877 1.00468 1.00383 0.96351 1.21515 1.00926 1.01270 0.94078 1.21265 0.93325 0.93002 1.01085 1.21457 1.03141 1.03007 0.90537 1.17706 0.93988 0.92961 0.87167 1.91499 1.78943 1.75151 1.66591 1.20740 0.98062 0.97815 1.00645 0.94245 0.92417 0.92347 0.91457 0.93886 0.92122 0.75607 0.89640 0.89004 0.90645 0.75534 0.87280 0.88304 0.84756 0.82052 0.82357 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.51 71.98 0.61 -4.18 16 2 C -0.14 -5.70 5.11 30.59 0.16 -5.55 16 3 C 0.25 11.05 1.83 44.25 0.08 11.13 16 4 H 0.03 1.31 6.64 -2.39 -0.02 1.29 16 5 C -0.53 -27.98 9.31 25.60 0.24 -27.74 16 6 H 0.06 3.14 7.98 -2.91 -0.02 3.12 16 7 C 0.03 1.60 5.45 84.65 0.46 2.06 16 8 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 9 Si 0.94 43.49 24.41 68.60 1.67 45.17 16 10 H -0.26 -11.51 6.83 99.48 0.68 -10.83 16 11 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.26 -11.66 6.53 99.48 0.65 -11.01 16 13 N -0.69 -24.50 4.93 -446.09 -2.20 -26.70 16 14 C 0.49 15.37 5.26 87.66 0.46 15.83 16 15 O -0.57 -21.07 13.12 -3.04 -0.04 -21.11 16 16 C 0.15 3.50 1.00 -11.54 -0.01 3.49 16 17 C -0.14 -2.94 8.51 71.98 0.61 -2.33 16 18 O -0.54 -12.07 12.05 -148.98 -1.79 -13.86 16 19 C -0.12 -2.59 3.19 71.98 0.23 -2.36 16 20 S -0.06 -1.18 19.96 -56.49 -1.13 -2.31 16 21 C -0.08 -1.51 6.11 22.61 0.14 -1.37 16 22 C -0.15 -2.73 9.36 22.41 0.21 -2.52 16 23 C -0.07 -0.96 10.04 22.24 0.22 -0.74 16 24 C -0.16 -2.35 10.02 22.35 0.22 -2.12 16 25 C 0.10 1.87 7.30 22.36 0.16 2.03 16 26 F -0.14 -2.78 17.27 44.97 0.78 -2.00 16 27 C -0.15 -2.80 9.77 22.45 0.22 -2.58 16 28 H 0.04 1.50 7.85 -2.39 -0.02 1.48 16 29 H 0.06 1.96 5.64 -2.39 -0.01 1.95 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.04 1.86 3.21 -2.38 -0.01 1.85 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.41 13.59 7.98 -92.71 -0.74 12.85 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.74 6.72 -2.39 -0.02 1.72 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.39 7.12 9.04 -74.06 -0.67 6.45 16 39 H 0.11 2.39 7.28 -2.39 -0.02 2.37 16 40 H 0.10 1.99 7.76 -2.39 -0.02 1.97 16 41 H 0.13 2.31 5.88 -2.91 -0.02 2.29 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -63.96 367.96 1.17 -62.79 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.44 Total: 29.73 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.02 Total: -16.94 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.90 Total: -81.47 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.83 Total: -34.97 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.17 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -1.13 Total: -2.31 kcal Total: -63.96 1.17 -62.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285944124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.082 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds