Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47100 * 2 1 4 4 C 1.50699 * 109.46931 * 240.00254 * 2 1 3 5 5 H 1.07998 * 119.99951 * 239.99802 * 4 2 1 6 6 C 1.37883 * 120.00007 * 59.99645 * 4 2 1 7 7 N 1.31513 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99962 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46701 * 90.00342 * 8 6 4 10 10 H 1.48497 * 109.47082 * 210.00303 * 8 6 4 11 11 H 1.48501 * 109.47180 * 330.00911 * 8 6 4 12 12 C 1.52998 * 109.46964 * 120.00324 * 2 1 3 13 13 S 1.81398 * 109.47306 * 299.99607 * 12 2 1 14 14 O 1.42105 * 110.54182 * 68.37651 * 13 12 2 15 15 O 1.42097 * 110.54451 * 291.62822 * 13 12 2 16 16 N 1.65597 * 104.44930 * 180.02562 * 13 12 2 17 17 C 1.47219 * 121.32140 * 90.00443 * 16 13 12 18 18 C 1.52779 * 107.93712 * 115.90846 * 17 16 13 19 19 C 1.50605 * 110.86617 * 47.50561 * 18 17 16 20 20 C 1.38940 * 117.61293 * 160.10966 * 19 18 17 21 21 C 1.38128 * 120.56208 * 178.79617 * 20 19 18 22 22 F 1.35099 * 120.11396 * 180.02562 * 21 20 19 23 23 C 1.38485 * 119.77502 * 0.02562 * 21 20 19 24 24 C 1.37925 * 119.68864 * 0.27145 * 23 21 20 25 25 C 1.37689 * 122.83958 * 339.41409 * 19 18 17 26 26 C 1.46675 * 121.32530 * 270.02354 * 16 13 12 27 27 H 1.09002 * 109.46670 * 299.99536 * 1 2 3 28 28 H 1.08998 * 109.47133 * 59.99353 * 1 2 3 29 29 H 1.08993 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46854 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47177 * 300.00550 * 3 2 1 32 32 H 1.09001 * 109.46493 * 60.00447 * 3 2 1 33 33 H 0.97001 * 119.99535 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46941 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.47291 * 60.00377 * 12 2 1 36 36 H 1.08993 * 109.77155 * 356.29357 * 17 16 13 37 37 H 1.09008 * 109.80958 * 235.54007 * 17 16 13 38 38 H 1.08998 * 109.19730 * 287.14842 * 18 17 16 39 39 H 1.08996 * 109.20055 * 167.85800 * 18 17 16 40 40 H 1.07997 * 119.71789 * 358.79022 * 20 19 18 41 41 H 1.07996 * 120.15964 * 180.54893 * 23 21 20 42 42 H 1.08004 * 119.72907 * 180.02562 * 24 23 21 43 43 H 1.08998 * 109.43984 * 104.42606 * 26 16 13 44 44 H 1.09004 * 109.43527 * 344.55603 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1400 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 6 2.0400 -0.7213 1.2492 13 16 1.4355 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0542 -0.7402 3.9935 17 6 3.3668 -0.4177 4.5770 18 6 3.1436 0.0226 6.0229 19 6 2.2310 -0.9365 6.7408 20 6 2.2589 -0.9345 8.1300 21 6 1.4293 -1.7716 8.8504 22 9 1.4636 -1.7618 10.2009 23 6 0.5623 -2.6211 8.1835 24 6 0.5386 -2.6280 6.8045 25 6 1.3755 -1.7896 6.0802 26 6 1.3166 -1.8667 4.5751 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 0.7094 1.1619 -3.4844 34 1 3.1301 -0.7209 1.2494 35 1 1.6767 -1.7490 1.2491 36 1 3.8323 0.3906 4.0132 37 1 4.0076 -1.2992 4.5548 38 1 2.6961 1.0164 6.0299 39 1 4.1030 0.0585 6.5388 40 1 2.9350 -0.2727 8.6509 41 1 -0.0953 -3.2718 8.7407 42 1 -0.1376 -3.2899 6.2838 43 1 1.7633 -2.8035 4.2421 44 1 0.2768 -1.8258 4.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295217983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -110.747202 kcal Electronic energy + Delta-G solvation = -28286.979245 eV Core-core repulsion = 24244.955437 eV Total energy + Delta-G solvation = -4042.023808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.89596 -40.87496 -38.18262 -38.12277 -37.44949 -36.83064 -33.89865 -33.61887 -31.84165 -30.37528 -28.31893 -27.68266 -27.24065 -25.98184 -24.81435 -23.49559 -21.60762 -21.24654 -19.57430 -18.90664 -18.18695 -17.91116 -17.47898 -17.26415 -16.88520 -16.62854 -16.59045 -16.37105 -15.65907 -15.56468 -15.12377 -14.92088 -14.66084 -14.42384 -14.39492 -14.32085 -13.82380 -13.81580 -13.52564 -13.37166 -13.14732 -12.95945 -12.89228 -12.84737 -12.76039 -12.48530 -12.31495 -12.17621 -12.14365 -12.06491 -11.93622 -11.68600 -11.55349 -11.35745 -10.64396 -10.40750 -10.08086 -9.81428 -9.44484 -8.02273 -6.20921 -0.66061 0.13059 0.23622 1.44842 1.46989 1.55291 1.77467 2.45057 2.53814 2.92184 3.18139 3.21452 3.25828 3.53789 3.69581 3.88744 3.90864 4.08974 4.16139 4.18885 4.21402 4.34633 4.51341 4.53402 4.61085 4.62866 4.76530 4.85807 4.87842 4.88517 4.97057 5.00676 5.08728 5.08807 5.14163 5.17450 5.26640 5.39995 5.49542 5.55488 5.65619 5.66196 5.92132 5.98606 6.12810 6.35101 6.84320 7.47615 8.97482 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.002739 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.902662 B =10221.249215 C =10406.505377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.584 4.584 13 S 2.612 3.388 14 O -0.988 6.988 15 O -0.985 6.985 16 N -1.005 6.005 17 C 0.112 3.888 18 C -0.099 4.099 19 C -0.050 4.050 20 C -0.159 4.159 21 C 0.078 3.922 22 F -0.149 7.149 23 C -0.156 4.156 24 C -0.085 4.085 25 C -0.108 4.108 26 C 0.150 3.850 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.112 0.888 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -8.127 19.662 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.716 4.716 13 S 2.711 3.289 14 O -0.978 6.978 15 O -0.975 6.975 16 N -0.843 5.843 17 C -0.013 4.013 18 C -0.137 4.137 19 C -0.050 4.050 20 C -0.178 4.178 21 C 0.059 3.941 22 F -0.127 7.127 23 C -0.175 4.175 24 C -0.103 4.103 25 C -0.110 4.110 26 C 0.025 3.975 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.177 0.823 43 H 0.130 0.870 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.781 -7.217 19.677 21.297 hybrid contribution 0.338 -0.503 -0.977 1.149 sum 4.118 -7.720 18.700 20.646 Atomic orbital electron populations 1.22209 0.97801 1.00531 1.01248 1.17921 0.92294 0.92117 0.90961 1.22211 0.99897 0.98437 1.01267 1.21309 1.31606 1.12287 0.90359 0.91750 1.25682 0.95217 0.95633 1.01700 1.69948 1.37281 1.23680 1.23822 0.85623 0.78921 0.78233 0.79246 1.20397 1.21403 1.19062 1.30502 1.12589 1.13388 1.15152 1.04884 0.73827 0.74677 0.75513 1.93486 1.31286 1.86881 1.86127 1.93493 1.78410 1.39446 1.86137 1.57735 1.30279 1.47382 1.48862 1.21682 0.83177 1.02904 0.93512 1.20896 1.00119 0.97347 0.95348 1.19491 0.96699 0.96329 0.92509 1.21302 1.01491 1.01059 0.93949 1.17837 0.99773 0.99822 0.76628 1.91476 1.95801 1.95827 1.29627 1.21313 1.00275 1.00617 0.95250 1.21222 0.97917 0.98157 0.93048 1.20030 0.97381 0.97767 0.95839 1.20496 0.98095 0.89755 0.89146 0.94980 0.91198 0.93980 0.93973 0.91193 0.94949 0.92967 0.84424 0.84384 0.88504 0.87724 0.90748 0.86429 0.83417 0.82713 0.82256 0.87008 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 2 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 3 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 4 C -0.52 -26.23 8.01 25.60 0.21 -26.02 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.89 5.15 84.66 0.44 1.32 16 7 N -0.91 -49.78 9.35 21.45 0.20 -49.58 16 8 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 C -0.58 -20.86 5.12 71.98 0.37 -20.49 16 13 S 2.61 90.40 4.50 -56.49 -0.25 90.15 16 14 O -0.99 -39.36 14.25 -127.65 -1.82 -41.18 16 15 O -0.98 -38.90 14.38 -127.65 -1.84 -40.74 16 16 N -1.00 -24.79 3.19 -517.89 -1.65 -26.45 16 17 C 0.11 2.16 6.35 86.17 0.55 2.71 16 18 C -0.10 -1.77 5.87 29.74 0.17 -1.59 16 19 C -0.05 -0.98 5.76 -19.86 -0.11 -1.09 16 20 C -0.16 -2.94 9.57 22.41 0.21 -2.73 16 21 C 0.08 1.52 7.30 22.30 0.16 1.68 16 22 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 23 C -0.16 -2.58 10.04 22.25 0.22 -2.36 16 24 C -0.09 -1.39 9.62 22.34 0.21 -1.18 16 25 C -0.11 -2.14 5.82 -19.81 -0.12 -2.26 16 26 C 0.15 3.06 6.28 85.64 0.54 3.60 16 27 H 0.03 1.49 5.46 -2.39 -0.01 1.47 16 28 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 32 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 33 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 35 H 0.14 4.31 8.14 -2.39 -0.02 4.30 16 36 H 0.10 1.96 7.12 -2.39 -0.02 1.94 16 37 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.15 2.18 8.05 -2.91 -0.02 2.16 16 41 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.16 1.78 8.05 -2.91 -0.02 1.75 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 2.23 6.87 -2.39 -0.02 2.22 16 Total: -1.00 -67.49 357.11 2.40 -65.09 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.01 Total: 21.26 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 3.95 Total: -59.66 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.45 Total: -76.03 kcal Atomic # 8 Polarization: -78.27 SS G_CDS: -3.66 Total: -81.92 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 90.40 SS G_CDS: -0.25 Total: 90.15 kcal Total: -67.49 2.40 -65.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295217983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.662 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds