Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 C 1.52998 * 109.47322 * 239.99620 * 2 1 3 13 13 S 1.81399 * 109.47108 * 59.99946 * 12 2 1 14 14 O 1.42097 * 110.54529 * 291.62590 * 13 12 2 15 15 O 1.42100 * 110.53974 * 68.37575 * 13 12 2 16 16 N 1.65599 * 104.44808 * 180.02562 * 13 12 2 17 17 C 1.47232 * 121.33428 * 269.71485 * 16 13 12 18 18 C 1.53274 * 107.65235 * 115.83615 * 17 16 13 19 19 C 1.50598 * 110.83036 * 47.62926 * 18 17 16 20 20 C 1.39197 * 117.61692 * 160.42262 * 19 18 17 21 21 F 1.35093 * 119.74257 * 358.74996 * 20 19 18 22 22 C 1.38142 * 120.52295 * 178.80433 * 20 19 18 23 23 C 1.38224 * 119.79685 * 0.02562 * 22 20 19 24 24 C 1.37960 * 119.75008 * 0.26766 * 23 22 20 25 25 C 1.37625 * 122.87098 * 339.69097 * 19 18 17 26 26 C 1.46677 * 121.33428 * 90.00418 * 16 13 12 27 27 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 28 28 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 29 29 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46986 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.46857 * 300.00471 * 12 2 1 36 36 H 1.08996 * 109.77369 * 235.42443 * 17 16 13 37 37 H 1.08994 * 109.77602 * 356.22243 * 17 16 13 38 38 H 1.09000 * 109.30864 * 287.22188 * 18 17 16 39 39 H 1.09003 * 109.08335 * 167.89130 * 18 17 16 40 40 H 1.08003 * 120.09964 * 180.02562 * 22 20 19 41 41 H 1.08006 * 120.12771 * 180.28669 * 23 22 20 42 42 H 1.07997 * 119.72752 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.43602 * 344.45569 * 26 16 13 44 44 H 1.09005 * 109.43808 * 104.32644 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1572 -0.1843 4.8128 11 1 1.1722 -1.5772 4.8199 12 6 2.0400 -0.7213 -1.2492 13 16 1.4354 0.1337 -2.7304 14 8 0.0280 -0.0185 -2.8544 15 8 2.0480 1.4098 -2.8544 16 7 2.0531 -0.7411 -3.9935 17 6 3.3630 -0.4160 -4.5819 18 6 4.2938 -1.6075 -4.3311 19 6 3.6171 -2.9021 -4.6974 20 6 4.4268 -4.0105 -4.9287 21 9 5.7696 -3.8888 -4.8448 22 6 3.8681 -5.2338 -5.2443 23 6 2.4944 -5.3595 -5.3321 24 6 1.6908 -4.2604 -5.1091 25 6 2.2502 -3.0289 -4.7951 26 6 1.3144 -1.8670 -4.5750 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7218 1.1708 3.4843 34 1 3.1300 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2491 36 1 3.2546 -0.2492 -5.6536 37 1 3.7684 0.4779 -4.1081 38 1 4.5703 -1.6333 -3.2771 39 1 5.1937 -1.4900 -4.9349 40 1 4.5028 -6.0895 -5.4220 41 1 2.0517 -6.3145 -5.5740 42 1 0.6176 -4.3589 -5.1782 43 1 0.5169 -2.1673 -3.8954 44 1 0.8823 -1.5635 -5.5286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295232862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = -91.978390 kcal Electronic energy + Delta-G solvation = -28872.043748 eV Core-core repulsion = 24830.833817 eV Total energy + Delta-G solvation = -4041.209932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.06087 -39.98834 -36.76945 -36.63141 -36.28935 -35.35161 -32.71676 -31.68599 -31.42790 -29.27179 -26.73500 -25.74169 -25.37330 -25.21431 -24.02501 -22.35354 -20.73528 -19.36864 -18.47263 -17.69557 -17.34942 -16.57000 -16.10830 -15.97720 -15.85277 -15.68825 -15.46554 -14.80029 -14.66972 -14.32284 -13.90278 -13.84923 -13.53440 -13.13481 -13.04523 -12.85586 -12.58651 -12.53115 -12.38890 -12.09015 -11.93071 -11.71087 -11.53123 -11.35725 -11.12540 -11.09278 -10.94756 -10.85862 -10.72631 -10.37398 -10.30623 -10.12644 -9.67825 -9.63468 -9.12664 -8.92732 -8.77855 -8.63900 -8.42019 -6.05051 -4.16886 0.74595 0.92799 0.97318 2.97468 3.23985 3.31568 3.32583 3.35431 3.98869 4.27432 4.34740 4.36593 4.40901 4.56926 4.70410 4.76589 4.85066 5.05342 5.14677 5.20016 5.21280 5.32692 5.39550 5.51178 5.60929 5.66218 5.69042 5.79478 5.86826 5.90947 5.96739 6.11226 6.30408 6.36024 6.54325 6.67435 6.68438 6.77081 6.87770 7.01258 7.29041 7.47974 7.66536 7.95899 8.07804 8.31219 8.81878 9.48748 10.96305 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003914 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.463343 B = 7151.243327 C = 8071.414935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.580 4.580 13 S 2.594 3.406 14 O -0.960 6.960 15 O -0.958 6.958 16 N -1.012 6.012 17 C 0.122 3.878 18 C -0.104 4.104 19 C -0.095 4.095 20 C 0.095 3.905 21 F -0.139 7.139 22 C -0.156 4.156 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.064 4.064 26 C 0.165 3.835 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.096 0.904 33 H 0.262 0.738 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 -9.395 -17.042 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.713 4.713 13 S 2.693 3.307 14 O -0.950 6.950 15 O -0.949 6.949 16 N -0.846 5.846 17 C -0.003 4.003 18 C -0.142 4.142 19 C -0.097 4.097 20 C 0.076 3.924 21 F -0.117 7.117 22 C -0.175 4.175 23 C -0.112 4.112 24 C -0.143 4.143 25 C -0.066 4.066 26 C 0.039 3.961 27 H 0.113 0.887 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.122 0.878 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.414 -8.461 -17.031 19.321 hybrid contribution 1.074 -1.252 1.164 2.019 sum 4.487 -9.713 -15.867 19.138 Atomic orbital electron populations 1.22268 0.96890 1.00604 1.02294 1.17948 0.92838 0.92224 0.89088 1.22275 0.99710 0.97787 1.02343 1.20971 1.31697 1.11965 0.89348 0.92300 1.24930 0.94901 0.94957 0.98917 1.69809 1.36624 1.22355 1.23383 0.86489 0.78659 0.79642 0.82928 1.19862 1.20922 1.20925 1.30567 1.11242 1.12767 1.16749 1.05780 0.74650 0.75016 0.75206 1.93538 1.29284 1.86537 1.85655 1.93536 1.78152 1.37545 1.85634 1.58176 1.29633 1.46256 1.50546 1.21477 0.81749 0.97197 0.99896 1.20942 0.98545 0.91472 1.03248 1.19478 0.92984 0.95018 1.02182 1.17744 0.77003 0.94555 1.03109 1.91481 1.29775 1.96642 1.93827 1.21066 0.96347 0.96338 1.03721 1.20899 0.92477 0.98989 0.98815 1.21157 1.00689 0.91844 1.00635 1.19806 0.92853 0.95510 0.98404 1.20167 0.92286 0.83161 1.00454 0.88669 0.95401 0.94474 0.94483 0.95430 0.88559 0.92791 0.86469 0.86477 0.90495 0.87766 0.89363 0.89299 0.84848 0.84892 0.84906 0.87819 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.78 37.16 0.29 -3.68 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 4 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.99 9.35 55.43 0.52 -23.47 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.58 -11.26 5.12 37.16 0.19 -11.07 16 13 S 2.59 47.29 4.48 -107.50 -0.48 46.81 16 14 O -0.96 -19.45 14.55 -57.54 -0.84 -20.29 16 15 O -0.96 -19.50 14.30 -57.54 -0.82 -20.32 16 16 N -1.01 -14.04 3.18 -114.76 -0.37 -14.40 16 17 C 0.12 1.43 6.45 -3.50 -0.02 1.41 16 18 C -0.10 -1.15 5.58 -27.79 -0.16 -1.30 16 19 C -0.10 -1.11 5.77 -104.54 -0.60 -1.71 16 20 C 0.10 1.08 7.21 -39.26 -0.28 0.80 16 21 F -0.14 -1.66 16.41 2.25 0.04 -1.62 16 22 C -0.16 -1.48 10.02 -39.62 -0.40 -1.87 16 23 C -0.09 -0.78 10.05 -39.69 -0.40 -1.18 16 24 C -0.12 -1.14 9.62 -39.45 -0.38 -1.52 16 25 C -0.06 -0.71 5.82 -104.56 -0.61 -1.32 16 26 C 0.16 1.94 6.02 -5.04 -0.03 1.91 16 27 H 0.09 2.50 6.09 -51.93 -0.32 2.19 16 28 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 32 H 0.10 2.54 6.05 -51.93 -0.31 2.22 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 35 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.24 6.98 -51.93 -0.36 0.88 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.84 7.76 -51.93 -0.40 0.44 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.92 8.05 -52.49 -0.42 0.50 16 43 H 0.10 1.20 7.40 -51.93 -0.38 0.82 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -31.43 356.42 -10.28 -41.70 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.12 Total: 3.72 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -2.56 Total: -33.11 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.15 Total: -37.87 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.66 Total: -40.61 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.48 Total: 46.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.43 -10.28 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295232862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.274 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds