Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.50701 * 109.47022 * 240.00732 * 2 1 3 5 5 H 1.08006 * 119.99502 * 239.99637 * 4 2 1 6 6 C 1.37869 * 120.00425 * 59.99668 * 4 2 1 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47088 * 60.00009 * 8 6 4 10 10 H 1.48499 * 109.47201 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46993 * 299.99835 * 8 6 4 12 12 C 1.52996 * 109.47465 * 119.99998 * 2 1 3 13 13 S 1.81395 * 109.47218 * 300.00375 * 12 2 1 14 14 O 1.42095 * 110.54425 * 68.37360 * 13 12 2 15 15 O 1.42100 * 110.54462 * 291.62074 * 13 12 2 16 16 N 1.65601 * 104.45080 * 179.97438 * 13 12 2 17 17 C 1.47219 * 121.32702 * 89.99721 * 16 13 12 18 18 C 1.52779 * 107.93837 * 115.91229 * 17 16 13 19 19 C 1.50609 * 110.86272 * 47.51127 * 18 17 16 20 20 C 1.39003 * 117.60216 * 160.10899 * 19 18 17 21 21 C 1.37867 * 120.61580 * 178.79011 * 20 19 18 22 22 C 1.38486 * 119.79959 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.16857 * 180.28469 * 22 21 20 24 24 C 1.38177 * 119.66453 * 0.26683 * 22 21 20 25 25 C 1.37677 * 122.83725 * 339.41527 * 19 18 17 26 26 C 1.46682 * 121.32659 * 270.02500 * 16 13 12 27 27 H 1.09007 * 109.47106 * 299.99290 * 1 2 3 28 28 H 1.08999 * 109.47866 * 59.99479 * 1 2 3 29 29 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46799 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47456 * 300.00122 * 3 2 1 32 32 H 1.09003 * 109.47137 * 60.00459 * 3 2 1 33 33 H 0.96996 * 120.00228 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47435 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46701 * 60.00416 * 12 2 1 36 36 H 1.08999 * 109.76624 * 356.29891 * 17 16 13 37 37 H 1.09008 * 109.76338 * 235.52299 * 17 16 13 38 38 H 1.08997 * 109.19702 * 287.15539 * 18 17 16 39 39 H 1.08999 * 109.19542 * 167.86796 * 18 17 16 40 40 H 1.07995 * 119.69084 * 358.76364 * 20 19 18 41 41 H 1.07997 * 120.09988 * 180.02562 * 21 20 19 42 42 H 1.08002 * 119.76104 * 180.27490 * 24 22 21 43 43 H 1.08993 * 109.43797 * 104.41775 * 26 16 13 44 44 H 1.09005 * 109.43415 * 344.54484 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8258 -0.4202 -5.2205 11 1 3.8063 -1.1205 -4.0083 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1338 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0531 -0.7409 3.9935 17 6 3.3656 -0.4194 4.5777 18 6 3.1421 0.0205 6.0236 19 6 2.2286 -0.9383 6.7409 20 6 2.2562 -0.9365 8.1306 21 6 1.4279 -1.7712 8.8504 22 6 0.5599 -2.6205 8.1848 23 9 -0.2592 -3.4375 8.8828 24 6 0.5354 -2.6280 6.8033 25 6 1.3731 -1.7905 6.0797 26 6 1.3145 -1.8671 4.5746 27 1 -0.3634 0.5138 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.7079 1.1610 -3.4843 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2491 36 1 3.8319 0.3888 4.0143 37 1 4.0051 -1.3020 4.5554 38 1 2.6953 1.0146 6.0308 39 1 4.1015 0.0558 6.5398 40 1 2.9330 -0.2755 8.6514 41 1 1.4559 -1.7627 9.9300 42 1 -0.1440 -3.2866 6.2827 43 1 1.7608 -2.8041 4.2414 44 1 0.2749 -1.8255 4.2495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296158391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -92.809774 kcal Electronic energy + Delta-G solvation = -28318.691342 eV Core-core repulsion = 24277.445359 eV Total energy + Delta-G solvation = -4041.245983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.07090 -40.09728 -36.71949 -36.57370 -36.29076 -35.33117 -33.01288 -31.69492 -31.28477 -29.31630 -26.74188 -25.75379 -25.34920 -25.23494 -23.78687 -22.74827 -20.71133 -19.47423 -18.37297 -17.64708 -17.51465 -16.52618 -16.06447 -15.91641 -15.78894 -15.68401 -15.33911 -14.81497 -14.75348 -14.39674 -14.19479 -13.75305 -13.56180 -13.21521 -13.06690 -12.91178 -12.79364 -12.54343 -12.33570 -12.12282 -11.80104 -11.60108 -11.56012 -11.23726 -11.15039 -11.06538 -10.99117 -10.88911 -10.72808 -10.43375 -10.30841 -10.14188 -9.68961 -9.66366 -9.24644 -8.97634 -8.68530 -8.66872 -8.42881 -6.06251 -4.18685 0.72414 0.91406 0.95177 2.97370 3.24940 3.28770 3.30730 3.32081 3.99276 4.28129 4.32037 4.36495 4.41630 4.60864 4.65510 4.77002 4.80888 4.97891 5.18388 5.19527 5.23176 5.35319 5.38739 5.52558 5.57525 5.60879 5.66046 5.72467 5.85202 5.89470 5.95042 6.06597 6.33373 6.36506 6.54293 6.65877 6.66579 6.75818 6.86565 7.00220 7.27668 7.46570 7.64731 7.94727 8.06054 8.29577 8.79665 9.46980 10.95022 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002851 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.849654 B = 9817.669421 C =10174.945750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.593 3.407 14 O -0.960 6.960 15 O -0.958 6.958 16 N -1.011 6.011 17 C 0.120 3.880 18 C -0.097 4.097 19 C -0.076 4.076 20 C -0.092 4.092 21 C -0.155 4.155 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.149 4.149 25 C -0.055 4.055 26 C 0.155 3.845 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -5.246 19.279 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.714 4.714 13 S 2.693 3.307 14 O -0.950 6.950 15 O -0.948 6.948 16 N -0.846 5.846 17 C -0.005 4.005 18 C -0.135 4.135 19 C -0.076 4.076 20 C -0.110 4.110 21 C -0.174 4.174 22 C 0.075 3.925 23 F -0.120 7.120 24 C -0.168 4.168 25 C -0.057 4.057 26 C 0.029 3.971 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.102 0.898 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.631 -4.366 19.271 20.090 hybrid contribution 0.519 -1.264 -0.857 1.613 sum 4.150 -5.630 18.414 19.697 Atomic orbital electron populations 1.22278 0.96891 1.00645 1.02344 1.17933 0.92842 0.92211 0.89031 1.22279 0.99718 0.97806 1.02344 1.20904 1.31880 1.12154 0.89395 0.92336 1.24936 0.94856 0.94969 0.98933 1.69788 1.36151 1.22563 1.23646 0.86591 0.79149 0.79724 0.82127 1.20257 1.21161 1.20257 1.30576 1.11320 1.12813 1.16680 1.05778 0.74641 0.75037 0.75233 1.93530 1.29380 1.86477 1.85616 1.93535 1.78114 1.37519 1.85659 1.58141 1.29141 1.47049 1.50284 1.21373 0.84114 1.01526 0.93510 1.20826 0.98751 0.98350 0.95567 1.19592 0.97497 0.97198 0.93350 1.21051 0.98576 0.98208 0.93167 1.21048 0.97695 0.97847 1.00793 1.17536 0.92500 0.92719 0.89786 1.91499 1.70662 1.70730 1.79097 1.21045 1.01642 1.01892 0.92244 1.19657 0.94950 0.95216 0.95862 1.20256 0.98556 0.89647 0.88614 0.95389 0.88623 0.94455 0.94451 0.88629 0.95385 0.92642 0.86334 0.86360 0.88168 0.90764 0.89517 0.89447 0.84964 0.84826 0.84346 0.89766 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.77 37.15 0.29 -3.68 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.16 -3.95 7.77 37.16 0.29 -3.66 16 4 C -0.50 -13.00 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.83 9.35 55.43 0.52 -23.31 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C -0.58 -10.88 5.12 37.16 0.19 -10.69 16 13 S 2.59 46.39 4.50 -107.50 -0.48 45.91 16 14 O -0.96 -19.49 14.25 -57.54 -0.82 -20.31 16 15 O -0.96 -19.12 14.39 -57.54 -0.83 -19.95 16 16 N -1.01 -13.60 3.19 -115.04 -0.37 -13.97 16 17 C 0.12 1.30 6.35 -3.76 -0.02 1.28 16 18 C -0.10 -0.94 5.87 -28.04 -0.16 -1.10 16 19 C -0.08 -0.80 5.76 -104.59 -0.60 -1.40 16 20 C -0.09 -0.82 9.59 -39.43 -0.38 -1.20 16 21 C -0.16 -1.43 10.03 -39.63 -0.40 -1.83 16 22 C 0.09 1.00 7.30 -39.51 -0.29 0.72 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.15 -1.59 9.60 -39.39 -0.38 -1.97 16 25 C -0.06 -0.63 5.82 -104.56 -0.61 -1.24 16 26 C 0.15 1.82 6.28 -5.04 -0.03 1.79 16 27 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 28 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 35 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.10 1.10 7.12 -51.93 -0.37 0.73 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.13 0.84 8.05 -52.49 -0.42 0.42 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 1.25 8.05 -52.49 -0.42 0.83 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 1.37 6.87 -51.93 -0.36 1.01 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -31.37 357.11 -10.25 -41.62 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.11 Total: 3.63 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -2.55 Total: -32.78 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.15 Total: -37.28 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.65 Total: -40.26 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 46.39 SS G_CDS: -0.48 Total: 45.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.37 -10.25 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296158391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.193 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds