Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.50701 * 109.47022 * 240.00732 * 2 1 3 5 5 H 1.08006 * 119.99502 * 239.99637 * 4 2 1 6 6 C 1.37869 * 120.00425 * 59.99668 * 4 2 1 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47088 * 60.00009 * 8 6 4 10 10 H 1.48499 * 109.47201 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46993 * 299.99835 * 8 6 4 12 12 C 1.52996 * 109.47465 * 119.99998 * 2 1 3 13 13 S 1.81395 * 109.47218 * 300.00375 * 12 2 1 14 14 O 1.42095 * 110.54425 * 68.37360 * 13 12 2 15 15 O 1.42100 * 110.54462 * 291.62074 * 13 12 2 16 16 N 1.65601 * 104.45080 * 179.97438 * 13 12 2 17 17 C 1.47219 * 121.32702 * 89.99721 * 16 13 12 18 18 C 1.52779 * 107.93837 * 115.91229 * 17 16 13 19 19 C 1.50609 * 110.86272 * 47.51127 * 18 17 16 20 20 C 1.39003 * 117.60216 * 160.10899 * 19 18 17 21 21 C 1.37867 * 120.61580 * 178.79011 * 20 19 18 22 22 C 1.38486 * 119.79959 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.16857 * 180.28469 * 22 21 20 24 24 C 1.38177 * 119.66453 * 0.26683 * 22 21 20 25 25 C 1.37677 * 122.83725 * 339.41527 * 19 18 17 26 26 C 1.46682 * 121.32659 * 270.02500 * 16 13 12 27 27 H 1.09007 * 109.47106 * 299.99290 * 1 2 3 28 28 H 1.08999 * 109.47866 * 59.99479 * 1 2 3 29 29 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46799 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47456 * 300.00122 * 3 2 1 32 32 H 1.09003 * 109.47137 * 60.00459 * 3 2 1 33 33 H 0.96996 * 120.00228 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47435 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46701 * 60.00416 * 12 2 1 36 36 H 1.08999 * 109.76624 * 356.29891 * 17 16 13 37 37 H 1.09008 * 109.76338 * 235.52299 * 17 16 13 38 38 H 1.08997 * 109.19702 * 287.15539 * 18 17 16 39 39 H 1.08999 * 109.19542 * 167.86796 * 18 17 16 40 40 H 1.07995 * 119.69084 * 358.76364 * 20 19 18 41 41 H 1.07997 * 120.09988 * 180.02562 * 21 20 19 42 42 H 1.08002 * 119.76104 * 180.27490 * 24 22 21 43 43 H 1.08993 * 109.43797 * 104.41775 * 26 16 13 44 44 H 1.09005 * 109.43415 * 344.54484 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8258 -0.4202 -5.2205 11 1 3.8063 -1.1205 -4.0083 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1338 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0479 1.4100 2.8545 16 7 2.0531 -0.7409 3.9935 17 6 3.3656 -0.4194 4.5777 18 6 3.1421 0.0205 6.0236 19 6 2.2286 -0.9383 6.7409 20 6 2.2562 -0.9365 8.1306 21 6 1.4279 -1.7712 8.8504 22 6 0.5599 -2.6205 8.1848 23 9 -0.2592 -3.4375 8.8828 24 6 0.5354 -2.6280 6.8033 25 6 1.3731 -1.7905 6.0797 26 6 1.3145 -1.8671 4.5746 27 1 -0.3634 0.5138 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 0.7079 1.1610 -3.4843 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2491 36 1 3.8319 0.3888 4.0143 37 1 4.0051 -1.3020 4.5554 38 1 2.6953 1.0146 6.0308 39 1 4.1015 0.0558 6.5398 40 1 2.9330 -0.2755 8.6514 41 1 1.4559 -1.7627 9.9300 42 1 -0.1440 -3.2866 6.2827 43 1 1.7608 -2.8041 4.2414 44 1 0.2749 -1.8255 4.2495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296158391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -110.638344 kcal Electronic energy + Delta-G solvation = -28319.464447 eV Core-core repulsion = 24277.445359 eV Total energy + Delta-G solvation = -4042.019088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.88495 -40.87655 -38.19580 -38.13232 -37.46214 -36.84446 -33.79707 -33.62649 -32.12138 -30.10190 -28.34802 -27.69090 -27.24700 -26.22908 -24.60887 -23.48811 -21.64721 -21.25248 -19.56698 -18.88290 -18.40382 -17.92047 -17.41551 -17.04242 -16.91549 -16.63462 -16.59728 -16.40933 -15.81299 -15.44699 -15.07804 -14.90214 -14.67293 -14.48745 -14.41710 -14.31148 -13.91617 -13.74249 -13.67516 -13.46806 -13.03311 -12.98558 -12.85541 -12.80396 -12.65857 -12.49700 -12.35866 -12.18474 -12.16338 -12.01183 -11.93157 -11.75125 -11.56116 -11.36617 -10.66025 -10.40793 -10.12083 -9.79363 -9.43714 -8.02672 -6.21640 -0.67518 0.14645 0.21895 1.45966 1.46461 1.53547 1.75558 2.44671 2.54112 2.90594 3.13823 3.20095 3.31136 3.50904 3.73357 3.85958 3.94408 4.03691 4.11184 4.16921 4.24033 4.40707 4.47483 4.58138 4.60547 4.62415 4.75443 4.85475 4.86880 4.88259 4.93955 4.99691 5.06429 5.07930 5.14974 5.19660 5.30026 5.39059 5.49241 5.56667 5.63868 5.64926 5.92692 5.97809 6.11921 6.34347 6.83292 7.46933 8.96905 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002851 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.849654 B = 9817.669421 C =10174.945750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.612 3.388 14 O -0.989 6.989 15 O -0.982 6.982 16 N -1.004 6.004 17 C 0.108 3.892 18 C -0.096 4.096 19 C -0.087 4.087 20 C -0.088 4.088 21 C -0.153 4.153 22 C 0.076 3.924 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.071 4.071 26 C 0.149 3.851 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.112 0.888 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -6.427 20.939 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.717 4.717 13 S 2.711 3.289 14 O -0.980 6.980 15 O -0.972 6.972 16 N -0.842 5.842 17 C -0.016 4.016 18 C -0.134 4.134 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.172 4.172 22 C 0.057 3.943 23 F -0.127 7.127 24 C -0.177 4.177 25 C -0.073 4.073 26 C 0.024 3.976 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.129 0.871 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.455 -5.551 20.922 22.322 hybrid contribution -0.040 -0.901 -1.267 1.556 sum 5.415 -6.452 19.654 21.383 Atomic orbital electron populations 1.22207 0.97857 1.00455 1.01256 1.17917 0.92250 0.92188 0.90926 1.22205 0.99922 0.98338 1.01283 1.21287 1.31743 1.12371 0.90404 0.91766 1.25678 0.95167 0.95637 1.01688 1.69938 1.37118 1.23726 1.23914 0.85679 0.78798 0.78721 0.78822 1.19719 1.21429 1.19594 1.30506 1.12644 1.13315 1.15202 1.04875 0.73794 0.74701 0.75496 1.93485 1.31444 1.86899 1.86125 1.93494 1.78376 1.39254 1.86121 1.57732 1.30352 1.47235 1.48853 1.21737 0.82962 1.02892 0.93986 1.20878 1.00241 0.97277 0.95024 1.19826 0.97523 0.97103 0.94286 1.21363 0.98528 0.98049 0.92584 1.21354 0.96820 0.96969 1.02021 1.17776 0.93168 0.93392 0.89975 1.91479 1.71008 1.71068 1.79185 1.21155 1.01804 1.02162 0.92531 1.19683 0.95910 0.96267 0.95458 1.20452 0.98038 0.89932 0.89198 0.94993 0.91148 0.94122 0.93919 0.91179 0.94922 0.92934 0.84320 0.84562 0.88476 0.87828 0.90793 0.85995 0.82007 0.82692 0.83650 0.87077 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.77 71.98 0.56 -7.31 16 2 C 0.07 3.27 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -7.78 7.77 71.98 0.56 -7.22 16 4 C -0.52 -26.56 8.01 25.60 0.21 -26.35 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.93 5.15 84.65 0.44 1.37 16 7 N -0.91 -49.97 9.35 21.44 0.20 -49.77 16 8 Si 0.95 41.56 29.54 68.60 2.03 43.58 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 C -0.58 -21.16 5.12 71.98 0.37 -20.80 16 13 S 2.61 91.53 4.50 -56.49 -0.25 91.28 16 14 O -0.99 -40.25 14.25 -127.65 -1.82 -42.07 16 15 O -0.98 -38.77 14.39 -127.65 -1.84 -40.60 16 16 N -1.00 -25.22 3.19 -517.88 -1.65 -26.87 16 17 C 0.11 2.06 6.35 86.17 0.55 2.61 16 18 C -0.10 -1.58 5.87 29.75 0.17 -1.41 16 19 C -0.09 -1.61 5.76 -19.84 -0.11 -1.72 16 20 C -0.09 -1.28 9.59 22.37 0.21 -1.07 16 21 C -0.15 -2.43 10.03 22.24 0.22 -2.21 16 22 C 0.08 1.52 7.30 22.31 0.16 1.68 16 23 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 24 C -0.16 -3.18 9.60 22.39 0.22 -2.96 16 25 C -0.07 -1.50 5.82 -19.83 -0.12 -1.61 16 26 C 0.15 3.26 6.28 85.63 0.54 3.79 16 27 H 0.03 1.50 5.46 -2.38 -0.01 1.49 16 28 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 32 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 33 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 34 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 35 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 36 H 0.10 1.92 7.12 -2.39 -0.02 1.90 16 37 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.16 1.35 8.05 -2.91 -0.02 1.33 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.15 2.55 8.05 -2.91 -0.02 2.53 16 43 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.38 6.87 -2.38 -0.02 2.36 16 Total: -1.00 -67.99 357.11 2.40 -65.59 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.01 Total: 21.25 kcal Atomic # 6 Polarization: -63.91 SS G_CDS: 3.95 Total: -59.96 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.45 Total: -76.64 kcal Atomic # 8 Polarization: -79.01 SS G_CDS: -3.66 Total: -82.67 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 91.53 SS G_CDS: -0.25 Total: 91.28 kcal Total: -67.99 2.40 -65.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296158391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.052 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds