Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46676 * 90.00727 * 13 11 9 15 15 H 1.48502 * 109.46977 * 210.00025 * 13 11 9 16 16 H 1.48494 * 109.47494 * 330.00753 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 N 1.46500 * 109.46487 * 180.02562 * 19 17 2 21 21 C 1.34781 * 119.99773 * 180.02562 * 20 19 17 22 22 O 1.21703 * 119.99848 * 0.02562 * 21 20 19 23 23 C 1.46580 * 120.00075 * 179.97438 * 21 20 19 24 24 C 1.36648 * 125.45741 * 179.97438 * 23 21 20 25 25 C 1.37472 * 113.29541 * 179.97438 * 24 23 21 26 26 C 1.33811 * 115.10547 * 0.02562 * 25 24 23 27 27 S 1.70621 * 110.95165 * 359.75877 * 26 25 24 28 28 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 29 29 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 30 30 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 31 31 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 32 32 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 33 33 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 34 34 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 35 35 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 36 36 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 37 37 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 39 39 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 40 40 H 0.97001 * 120.00744 * 359.97438 * 20 19 17 41 41 H 1.08002 * 123.35228 * 359.95131 * 24 23 21 42 42 H 1.07998 * 122.44655 * 180.02562 * 25 24 23 43 43 H 1.08001 * 124.52924 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 3.9044 7.8236 4.8609 15 1 5.7374 6.7091 5.9917 16 1 5.8661 7.1416 3.6090 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3375 -3.5857 -0.0005 21 6 1.8883 -4.8565 -0.0010 22 8 0.6918 -5.0789 -0.0020 23 6 2.8409 -5.9706 -0.0016 24 6 2.5100 -7.2964 -0.0017 25 6 3.6035 -8.1296 -0.0028 26 6 4.7895 -7.5099 -0.0031 27 16 4.5923 -5.8151 -0.0087 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 4.1837 0.6812 1.6542 34 1 2.4436 3.8093 0.9571 35 1 4.0524 3.0493 0.9054 36 1 3.1004 2.9366 3.5618 37 1 3.9865 4.6238 6.2995 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 3.2912 -3.4085 -0.0009 41 1 1.4910 -7.6541 -0.0005 42 1 3.5120 -9.2057 -0.0034 43 1 5.7441 -8.0150 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734533113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -65.253780 kcal Electronic energy + Delta-G solvation = -26519.491852 eV Core-core repulsion = 22499.360748 eV Total energy + Delta-G solvation = -4020.131104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57227 -39.63413 -37.85538 -37.34765 -35.46144 -34.74176 -33.97412 -31.38654 -30.74265 -29.73872 -28.00647 -27.02477 -25.47723 -24.63743 -22.74201 -21.63249 -21.15881 -20.17823 -19.41612 -18.93742 -17.16639 -17.11740 -16.90221 -16.48966 -16.20411 -15.90972 -15.67913 -15.25087 -15.02814 -14.64019 -14.43991 -14.03877 -13.86909 -13.46403 -13.28912 -13.19530 -13.14514 -12.97642 -12.67481 -12.66968 -12.63162 -12.33025 -12.14732 -11.53801 -11.33085 -10.93411 -10.82159 -10.69108 -10.47968 -10.15925 -10.12384 -9.78361 -9.64664 -9.60053 -9.23633 -8.98236 -8.89501 -8.62999 -6.91760 -5.74443 -3.04025 0.12401 1.09000 1.50430 2.01271 2.36988 2.46325 2.87205 3.03722 3.43735 3.48461 3.50793 4.13954 4.45905 4.56898 4.61254 4.80470 4.84564 4.90449 4.97074 4.97393 5.06058 5.08257 5.19435 5.30159 5.46556 5.52546 5.54880 5.62607 5.69550 5.76959 5.86765 5.92053 5.98132 6.20125 6.33546 6.50793 6.71891 7.07634 7.12796 7.68916 7.77299 7.91306 8.17938 8.43848 9.55102 10.13204 10.48858 11.47877 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.001998 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.909372 B =14012.022149 C =15013.432320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.604 5.604 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.546 6.546 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.514 3.486 18 O -0.530 6.530 19 C 0.103 3.897 20 N -0.713 5.713 21 C 0.595 3.405 22 O -0.532 6.532 23 C -0.271 4.271 24 C -0.054 4.054 25 C -0.152 4.152 26 C -0.230 4.230 27 S 0.216 5.784 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.374 0.626 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -23.223 -16.164 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.337 5.337 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.351 6.351 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.301 3.699 18 O -0.407 6.407 19 C -0.024 4.024 20 N -0.368 5.368 21 C 0.382 3.618 22 O -0.410 6.410 23 C -0.391 4.391 24 C -0.087 4.087 25 C -0.184 4.184 26 C -0.368 4.368 27 S 0.484 5.516 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.221 0.779 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.929 -22.017 -15.792 27.378 hybrid contribution 0.220 -0.298 0.154 0.401 sum -3.709 -22.315 -15.638 27.500 Atomic orbital electron populations 1.21931 0.79057 1.04104 1.02124 1.47612 1.07110 1.05834 1.73096 1.22332 0.98329 0.84217 0.98946 1.22490 0.94604 0.89172 0.91252 0.88671 1.86553 1.29153 1.62411 1.56992 1.21227 0.96994 0.92325 0.89764 1.42235 1.73820 1.20143 1.00777 1.19217 1.32164 0.94256 0.91795 0.91277 1.24772 1.01990 0.98598 0.95608 1.69683 1.53023 1.36799 0.98247 0.86181 0.78862 0.83693 0.77369 1.21726 1.21739 1.20785 1.20273 0.88051 0.85252 0.76294 1.90668 1.13599 1.86794 1.49614 1.21132 0.92112 0.84213 1.04894 1.45563 1.11219 1.04506 1.75556 1.16872 0.87342 0.81418 0.76213 1.90835 1.15308 1.84546 1.50327 1.24560 0.97459 0.97802 1.19295 1.20808 1.01088 0.90361 0.96480 1.20056 0.90935 1.01797 1.05572 1.25416 1.03443 0.99479 1.08495 1.83352 0.98932 1.02680 1.66685 0.92091 0.90747 0.90184 0.89358 0.89284 0.77880 0.95799 0.96190 0.77655 0.93490 0.87949 0.88218 0.75105 0.82815 0.83630 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.24 59.85 0.61 1.13 16 2 N -0.60 -6.47 2.86 -181.56 -0.52 -6.99 16 3 C 0.08 1.02 5.11 -4.04 -0.02 1.00 16 4 C 0.09 1.37 3.30 -26.73 -0.09 1.28 16 5 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 6 O -0.55 -9.99 11.95 -42.91 -0.51 -10.50 16 7 C 0.13 2.45 5.92 -4.05 -0.02 2.43 16 8 N -0.72 -18.70 5.49 -59.91 -0.33 -19.02 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.51 6.16 7.37 -10.98 -0.08 6.08 16 18 O -0.53 -7.77 14.23 -2.11 -0.03 -7.80 16 19 C 0.10 1.04 4.71 -5.19 -0.02 1.02 16 20 N -0.71 -7.82 5.52 -62.83 -0.35 -8.17 16 21 C 0.60 7.04 7.78 -12.89 -0.10 6.94 16 22 O -0.53 -7.58 16.84 5.19 0.09 -7.49 16 23 C -0.27 -2.70 6.45 -36.79 -0.24 -2.93 16 24 C -0.05 -0.47 10.01 -40.44 -0.40 -0.87 16 25 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 26 C -0.23 -1.49 10.92 29.18 0.32 -1.17 16 27 S 0.22 1.69 22.16 -107.50 -2.38 -0.69 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 30 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 31 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.37 6.37 8.75 45.56 0.40 6.77 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.39 10.87 7.54 -40.82 -0.31 10.56 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 38 H 0.10 0.99 7.40 -51.93 -0.38 0.61 16 39 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.41 4.46 6.55 -40.82 -0.27 4.19 16 41 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -36.05 381.67 -8.34 -44.39 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.05 Total: 15.07 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.72 Total: 5.91 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.47 Total: -62.23 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.46 Total: -25.80 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.05 -8.34 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734533113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.863 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds