Wall clock time and date at job start Sat Apr 11 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46676 * 90.00727 * 13 11 9 15 15 H 1.48502 * 109.46977 * 210.00025 * 13 11 9 16 16 H 1.48494 * 109.47494 * 330.00753 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 N 1.46500 * 109.46487 * 180.02562 * 19 17 2 21 21 C 1.34781 * 119.99773 * 180.02562 * 20 19 17 22 22 O 1.21703 * 119.99848 * 0.02562 * 21 20 19 23 23 C 1.46580 * 120.00075 * 179.97438 * 21 20 19 24 24 C 1.36648 * 125.45741 * 179.97438 * 23 21 20 25 25 C 1.37472 * 113.29541 * 179.97438 * 24 23 21 26 26 C 1.33811 * 115.10547 * 0.02562 * 25 24 23 27 27 S 1.70621 * 110.95165 * 359.75877 * 26 25 24 28 28 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 29 29 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 30 30 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 31 31 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 32 32 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 33 33 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 34 34 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 35 35 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 36 36 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 37 37 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 39 39 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 40 40 H 0.97001 * 120.00744 * 359.97438 * 20 19 17 41 41 H 1.08002 * 123.35228 * 359.95131 * 24 23 21 42 42 H 1.07998 * 122.44655 * 180.02562 * 25 24 23 43 43 H 1.08001 * 124.52924 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 3.9044 7.8236 4.8609 15 1 5.7374 6.7091 5.9917 16 1 5.8661 7.1416 3.6090 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3375 -3.5857 -0.0005 21 6 1.8883 -4.8565 -0.0010 22 8 0.6918 -5.0789 -0.0020 23 6 2.8409 -5.9706 -0.0016 24 6 2.5100 -7.2964 -0.0017 25 6 3.6035 -8.1296 -0.0028 26 6 4.7895 -7.5099 -0.0031 27 16 4.5923 -5.8151 -0.0087 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 4.1837 0.6812 1.6542 34 1 2.4436 3.8093 0.9571 35 1 4.0524 3.0493 0.9054 36 1 3.1004 2.9366 3.5618 37 1 3.9865 4.6238 6.2995 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 3.2912 -3.4085 -0.0009 41 1 1.4910 -7.6541 -0.0005 42 1 3.5120 -9.2057 -0.0034 43 1 5.7441 -8.0150 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734533113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:04 Heat of formation + Delta-G solvation = -93.825730 kcal Electronic energy + Delta-G solvation = -26520.730824 eV Core-core repulsion = 22499.360748 eV Total energy + Delta-G solvation = -4021.370077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48162 -40.53587 -38.78713 -38.37010 -36.52147 -35.85403 -35.63338 -33.21196 -31.68386 -30.87634 -28.97745 -27.97561 -26.66047 -25.61807 -24.36324 -22.69161 -22.36110 -21.00076 -20.11848 -19.71318 -19.23386 -18.11032 -17.77842 -17.45396 -17.16630 -16.81169 -16.55597 -16.49930 -16.22187 -16.14680 -15.57238 -15.39578 -14.92789 -14.66926 -14.42456 -14.12013 -14.00820 -13.88000 -13.69821 -13.67848 -13.48171 -13.24222 -13.20899 -12.95218 -12.77948 -12.60222 -12.17876 -12.01760 -11.92638 -11.81457 -11.38693 -11.21447 -10.98550 -10.92618 -10.46769 -9.87666 -9.61444 -9.57045 -9.01399 -7.95066 -5.24900 -0.52297 0.47238 0.93124 1.37417 1.45061 1.46896 1.48790 1.57257 1.62124 2.08563 2.21104 2.55356 3.30205 3.37110 3.53490 3.71922 3.78759 4.07988 4.12630 4.14734 4.22439 4.24328 4.34273 4.34826 4.48737 4.52891 4.54054 4.67329 4.79759 4.92217 4.93770 5.00658 5.05654 5.20167 5.24985 5.35679 5.39977 5.47535 6.22048 6.25689 6.26370 6.82437 6.90363 7.01256 7.32141 8.09197 8.31344 9.28371 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.001998 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.909372 B =14012.022149 C =15013.432320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.602 5.602 3 C 0.097 3.903 4 C 0.095 3.905 5 H 0.089 0.911 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.247 4.247 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.285 1.285 15 H -0.297 1.297 16 H -0.268 1.268 17 C 0.510 3.490 18 O -0.562 6.562 19 C 0.106 3.894 20 N -0.714 5.714 21 C 0.594 3.406 22 O -0.565 6.565 23 C -0.306 4.306 24 C -0.052 4.052 25 C -0.159 4.159 26 C -0.217 4.217 27 S 0.216 5.784 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.377 0.623 34 H 0.041 0.959 35 H 0.024 0.976 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.411 0.589 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -23.627 -17.743 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.334 5.334 3 C -0.027 4.027 4 C 0.034 3.966 5 H 0.107 0.893 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.212 1.212 15 H -0.224 1.224 16 H -0.193 1.193 17 C 0.298 3.702 18 O -0.441 6.441 19 C -0.020 4.020 20 N -0.368 5.368 21 C 0.382 3.618 22 O -0.446 6.446 23 C -0.426 4.426 24 C -0.087 4.087 25 C -0.189 4.189 26 C -0.355 4.355 27 S 0.483 5.517 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.224 0.776 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.190 0.810 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.883 -22.403 -17.435 28.652 hybrid contribution 0.203 -0.242 0.581 0.661 sum -3.680 -22.645 -16.854 28.467 Atomic orbital electron populations 1.22208 0.76756 1.04874 1.04024 1.47685 1.08515 1.04918 1.72239 1.22118 0.99120 0.85563 0.95910 1.22435 0.93363 0.87043 0.93746 0.89290 1.86528 1.29684 1.62868 1.58073 1.21449 0.97683 0.94646 0.86668 1.42462 1.73735 1.19357 1.02859 1.19677 1.30950 0.95098 0.92108 0.90347 1.25658 1.03493 1.02460 0.95597 1.69856 1.55050 1.38868 0.98336 0.85085 0.77961 0.79296 0.77060 1.21155 1.22380 1.19271 1.20603 0.87792 0.86093 0.75748 1.90651 1.15015 1.87308 1.51171 1.21200 0.91858 0.83033 1.05953 1.45613 1.11368 1.04632 1.75141 1.17142 0.87287 0.81911 0.75477 1.90800 1.16588 1.85022 1.52196 1.24529 0.98399 0.97721 1.21934 1.21053 1.01916 0.90284 0.95449 1.20298 0.90260 1.02961 1.05364 1.25814 1.04649 0.98556 1.06454 1.83352 0.97430 1.04187 1.66718 0.89578 0.89792 0.89723 0.86381 0.89841 0.77559 0.94112 0.95813 0.79432 0.94070 0.87553 0.86328 0.75118 0.82794 0.81030 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.24 127.77 1.31 2.08 16 2 N -0.60 -11.92 2.86 -846.74 -2.42 -14.34 16 3 C 0.10 2.15 5.11 86.38 0.44 2.59 16 4 C 0.09 2.96 3.30 30.59 0.10 3.06 16 5 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 6 O -0.57 -20.91 11.95 -141.64 -1.69 -22.60 16 7 C 0.12 4.69 5.92 86.38 0.51 5.20 16 8 N -0.74 -38.39 5.49 -343.45 -1.89 -40.28 16 9 C -0.25 -13.94 9.99 84.04 0.84 -13.10 16 10 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 12 N -0.97 -61.22 13.06 21.65 0.28 -60.93 16 13 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 C 0.51 11.86 7.37 87.66 0.65 12.51 16 18 O -0.56 -16.50 14.23 4.32 0.06 -16.44 16 19 C 0.11 2.07 4.71 85.64 0.40 2.48 16 20 N -0.71 -15.77 5.52 -470.91 -2.60 -18.38 16 21 C 0.59 14.29 7.78 86.42 0.67 14.96 16 22 O -0.56 -16.39 16.84 -4.36 -0.07 -16.47 16 23 C -0.31 -6.09 6.45 24.08 0.16 -5.93 16 24 C -0.05 -0.88 10.01 21.72 0.22 -0.66 16 25 C -0.16 -1.84 10.15 21.08 0.21 -1.63 16 26 C -0.22 -2.33 10.92 66.81 0.73 -1.60 16 27 S 0.22 3.22 22.16 -56.49 -1.25 1.97 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.88 6.44 -2.39 -0.02 0.87 16 30 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 31 H 0.12 1.95 8.07 -2.38 -0.02 1.93 16 32 H 0.08 2.00 7.42 -2.39 -0.02 1.99 16 33 H 0.38 13.09 8.75 -74.06 -0.65 12.45 16 34 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.37 21.34 7.54 -92.71 -0.70 20.64 16 37 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.11 2.01 7.40 -2.39 -0.02 1.99 16 39 H 0.12 1.86 8.11 -2.39 -0.02 1.84 16 40 H 0.41 9.11 6.55 -92.71 -0.61 8.51 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 43 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -78.73 381.67 -1.73 -80.46 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.88 Total: 42.60 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.71 Total: 15.72 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -6.62 Total: -133.93 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.70 Total: -55.51 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.25 Total: 1.97 kcal Total: -78.73 -1.73 -80.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734533113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.369 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds