Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99984 * 2 1 4 4 C 1.50700 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.28643 * 124.71915 * 89.99666 * 4 3 2 6 6 C 1.33566 * 115.76345 * 179.78378 * 5 4 3 7 7 C 1.47266 * 123.14184 * 180.25296 * 6 5 4 8 8 O 1.21633 * 120.00129 * 188.17921 * 7 6 5 9 9 N 1.34782 * 119.99832 * 8.18808 * 7 6 5 10 10 C 1.47157 * 120.97867 * 187.70517 * 9 7 6 11 11 C 1.53292 * 108.38144 * 230.50692 * 10 9 7 12 12 O 1.42954 * 109.22637 * 307.70292 * 11 10 9 13 13 C 1.42955 * 114.17252 * 62.57660 * 12 11 10 14 14 H 1.09001 * 109.51265 * 57.34654 * 13 12 11 15 15 C 1.53000 * 109.51711 * 177.44369 * 13 12 11 16 16 N 1.46492 * 109.47509 * 300.00529 * 15 13 12 17 17 C 1.36930 * 120.00503 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99827 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00787 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99408 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00646 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47084 * 90.00087 * 21 19 17 23 23 H 1.48500 * 109.46962 * 210.00009 * 21 19 17 24 24 H 1.48502 * 109.46899 * 330.00051 * 21 19 17 25 25 C 1.47145 * 120.98309 * 7.41867 * 9 7 6 26 26 C 1.35208 * 113.71614 * 0.43573 * 6 5 4 27 27 S 1.70770 * 124.71656 * 270.02528 * 4 3 2 28 28 H 1.09005 * 109.46571 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47206 * 300.00162 * 1 2 3 30 30 H 1.08992 * 109.46982 * 60.00464 * 1 2 3 31 31 H 1.09003 * 109.47403 * 59.99574 * 3 2 1 32 32 H 1.09007 * 109.46705 * 299.99770 * 3 2 1 33 33 H 1.08996 * 109.68423 * 350.23096 * 10 9 7 34 34 H 1.08999 * 109.67847 * 110.74970 * 10 9 7 35 35 H 1.09007 * 109.51295 * 67.62330 * 11 10 9 36 36 H 1.08998 * 109.51459 * 187.77197 * 11 10 9 37 37 H 1.09001 * 109.46659 * 60.00716 * 15 13 12 38 38 H 1.09006 * 109.47300 * 179.97438 * 15 13 12 39 39 H 0.97006 * 120.00107 * 359.97438 * 16 15 13 40 40 H 0.96995 * 119.99518 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.68542 * 249.21213 * 25 9 7 42 42 H 1.09000 * 109.68009 * 9.76945 * 25 9 7 43 43 H 1.07996 * 125.58360 * 179.86594 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2425 1.1289 -1.0583 6 6 5.5582 1.0293 -0.8510 7 6 6.5424 0.9577 -1.9441 8 8 7.7092 0.7190 -1.6972 9 7 6.1502 1.1569 -3.2181 10 6 7.0742 0.9264 -4.3400 11 6 7.0564 2.1648 -5.2432 12 8 5.7045 2.4766 -5.5879 13 6 4.8790 2.8158 -4.4712 14 1 5.3155 3.6611 -3.9392 15 6 3.4799 3.1900 -4.9647 16 7 3.5722 4.3382 -5.8697 17 6 2.4389 4.8535 -6.4398 18 1 1.4769 4.4132 -6.2226 19 6 2.5261 5.9419 -7.2970 20 7 3.6986 6.4783 -7.5622 21 14 0.9800 6.6453 -8.0741 22 1 0.4188 7.7003 -7.1926 23 1 1.3136 7.2315 -9.3971 24 1 -0.0216 5.5632 -8.2505 25 6 4.7835 1.6053 -3.5286 26 6 5.9017 0.9965 0.4563 27 16 4.4826 1.1090 1.4026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 8.0823 0.7651 -3.9581 34 1 6.7523 0.0530 -4.9071 35 1 7.5008 3.0079 -4.7141 36 1 7.6260 1.9622 -6.1502 37 1 3.0433 2.3436 -5.4949 38 1 2.8510 3.4480 -4.1127 39 1 4.4362 4.7336 -6.0652 40 1 3.7596 7.2385 -8.1614 41 1 4.2346 0.7995 -4.0160 42 1 4.2740 1.8937 -2.6092 43 1 6.9082 0.9170 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755017032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -37.485874 kcal Electronic energy + Delta-G solvation = -27737.056549 eV Core-core repulsion = 23718.129552 eV Total energy + Delta-G solvation = -4018.926997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05599 -39.44097 -38.31007 -37.88398 -34.85817 -34.42255 -32.18814 -31.90299 -30.17757 -28.57662 -28.29253 -26.45355 -25.47173 -25.30090 -23.09438 -22.45721 -21.20232 -20.56945 -19.79104 -18.58609 -17.15401 -17.01650 -16.69541 -16.43543 -16.24130 -16.05598 -15.69017 -15.64394 -14.97226 -14.65400 -14.50409 -14.18087 -14.10208 -13.86297 -13.17655 -13.15492 -12.99616 -12.68490 -12.62549 -12.38021 -12.36334 -12.02165 -11.82460 -11.48434 -10.93033 -10.88653 -10.77419 -10.52506 -10.31720 -10.19436 -10.05440 -10.03114 -9.82988 -9.69102 -9.41328 -9.32691 -8.83623 -8.43095 -6.85469 -5.69861 -2.98381 0.12103 0.82963 1.22621 1.57963 2.84128 3.02253 3.31912 3.46566 3.51275 3.53672 3.82572 4.09495 4.37849 4.57095 4.64069 4.79497 4.86390 4.91045 4.98895 5.00634 5.10803 5.11280 5.26590 5.29991 5.35537 5.39755 5.45533 5.62913 5.64533 5.84428 5.91971 5.99616 6.17941 6.33140 6.46915 6.59846 6.61556 6.76386 7.02515 7.28422 7.57472 7.73806 7.96409 8.48318 9.59811 10.18210 10.54254 11.53004 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.003390 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.547755 B = 8258.314161 C =10464.224470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.137 3.863 4 C 0.017 3.983 5 N -0.416 5.416 6 C 0.013 3.987 7 C 0.596 3.404 8 O -0.541 6.541 9 N -0.594 5.594 10 C 0.076 3.924 11 C 0.048 3.952 12 O -0.359 6.359 13 C 0.072 3.928 14 H 0.059 0.941 15 C 0.166 3.834 16 N -0.726 5.726 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.060 3.940 26 C -0.222 4.222 27 S 0.241 5.759 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.033 0.967 39 H 0.388 0.612 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.140 0.860 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 -13.759 21.121 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.058 3.942 4 C -0.261 4.261 5 N -0.134 5.134 6 C -0.122 4.122 7 C 0.382 3.618 8 O -0.419 6.419 9 N -0.325 5.325 10 C -0.046 4.046 11 C -0.030 4.030 12 O -0.277 6.277 13 C 0.013 3.987 14 H 0.077 0.923 15 C 0.038 3.962 16 N -0.371 5.371 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.063 4.063 26 C -0.364 4.364 27 S 0.498 5.502 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.157 0.843 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.301 -14.007 21.541 25.697 hybrid contribution 0.077 0.671 -1.166 1.348 sum 0.378 -13.336 20.375 24.354 Atomic orbital electron populations 1.22828 0.79693 1.03364 1.00642 1.87937 1.20541 1.26126 1.95591 1.20830 0.83957 0.86282 1.03177 1.26824 1.01076 1.06068 0.92121 1.66943 1.03205 1.13415 1.29816 1.20371 0.89881 1.08485 0.93488 1.17070 0.86214 0.77025 0.81529 1.90790 1.17250 1.50614 1.83216 1.47945 1.14346 1.65287 1.04952 1.22431 0.95252 0.99374 0.87576 1.22902 0.85550 0.95298 0.99222 1.88141 1.19554 1.88461 1.31517 1.22933 0.93801 0.94762 0.87211 0.92333 1.20582 0.90263 0.91581 0.93781 1.42229 1.07772 1.33530 1.53521 1.19221 0.87257 1.09669 1.20811 0.91199 1.24740 0.96648 0.99022 1.00578 1.69684 1.22108 1.25873 1.40346 0.86192 0.82469 0.78907 0.78631 1.21809 1.21800 1.20770 1.23443 0.81965 0.97569 1.03323 1.26676 1.06408 1.06524 0.96797 1.82810 0.94342 1.62361 1.10658 0.89134 0.93686 0.93141 0.90567 0.89256 0.88326 0.90421 0.92915 0.87748 0.95421 0.94923 0.77833 0.93588 0.90563 0.84311 0.79081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.60 10.69 -35.23 -0.38 -3.98 16 3 C 0.14 1.12 6.51 36.01 0.23 1.36 16 4 C 0.02 0.18 6.97 -13.61 -0.09 0.08 16 5 N -0.42 -5.28 6.84 -8.51 -0.06 -5.33 16 6 C 0.01 0.17 6.47 -84.52 -0.55 -0.38 16 7 C 0.60 9.13 7.66 -12.59 -0.10 9.03 16 8 O -0.54 -9.17 16.21 5.25 0.09 -9.09 16 9 N -0.59 -8.94 3.01 -173.35 -0.52 -9.47 16 10 C 0.08 1.04 6.65 -3.53 -0.02 1.02 16 11 C 0.05 0.71 6.98 37.31 0.26 0.97 16 12 O -0.36 -6.82 10.13 -35.23 -0.36 -7.18 16 13 C 0.07 1.30 2.88 -26.36 -0.08 1.23 16 14 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.17 3.49 5.96 -4.05 -0.02 3.46 16 16 N -0.73 -19.22 5.49 -59.91 -0.33 -19.55 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.06 0.92 5.44 -3.32 -0.02 0.91 16 26 C -0.22 -2.27 10.62 29.65 0.32 -1.96 16 27 S 0.24 1.84 22.92 -107.50 -2.46 -0.62 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.10 1.29 7.06 -51.93 -0.37 0.92 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.39 10.99 7.54 -40.82 -0.31 10.68 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.14 2.06 4.31 -63.28 -0.27 1.79 16 43 H 0.19 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -35.75 372.67 -7.90 -43.65 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.99 Total: 6.94 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.80 Total: 9.55 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.19 Total: -62.51 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.65 Total: -20.24 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.46 Total: -0.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.75 -7.90 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755017032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.165 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds