Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99984 * 2 1 4 4 C 1.50700 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.28643 * 124.71915 * 89.99666 * 4 3 2 6 6 C 1.33566 * 115.76345 * 179.78378 * 5 4 3 7 7 C 1.47266 * 123.14184 * 180.25296 * 6 5 4 8 8 O 1.21633 * 120.00129 * 188.17921 * 7 6 5 9 9 N 1.34782 * 119.99832 * 8.18808 * 7 6 5 10 10 C 1.47157 * 120.97867 * 187.70517 * 9 7 6 11 11 C 1.53292 * 108.38144 * 230.50692 * 10 9 7 12 12 O 1.42954 * 109.22637 * 307.70292 * 11 10 9 13 13 C 1.42955 * 114.17252 * 62.57660 * 12 11 10 14 14 H 1.09001 * 109.51265 * 57.34654 * 13 12 11 15 15 C 1.53000 * 109.51711 * 177.44369 * 13 12 11 16 16 N 1.46492 * 109.47509 * 300.00529 * 15 13 12 17 17 C 1.36930 * 120.00503 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99827 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00787 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99408 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00646 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47084 * 90.00087 * 21 19 17 23 23 H 1.48500 * 109.46962 * 210.00009 * 21 19 17 24 24 H 1.48502 * 109.46899 * 330.00051 * 21 19 17 25 25 C 1.47145 * 120.98309 * 7.41867 * 9 7 6 26 26 C 1.35208 * 113.71614 * 0.43573 * 6 5 4 27 27 S 1.70770 * 124.71656 * 270.02528 * 4 3 2 28 28 H 1.09005 * 109.46571 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47206 * 300.00162 * 1 2 3 30 30 H 1.08992 * 109.46982 * 60.00464 * 1 2 3 31 31 H 1.09003 * 109.47403 * 59.99574 * 3 2 1 32 32 H 1.09007 * 109.46705 * 299.99770 * 3 2 1 33 33 H 1.08996 * 109.68423 * 350.23096 * 10 9 7 34 34 H 1.08999 * 109.67847 * 110.74970 * 10 9 7 35 35 H 1.09007 * 109.51295 * 67.62330 * 11 10 9 36 36 H 1.08998 * 109.51459 * 187.77197 * 11 10 9 37 37 H 1.09001 * 109.46659 * 60.00716 * 15 13 12 38 38 H 1.09006 * 109.47300 * 179.97438 * 15 13 12 39 39 H 0.97006 * 120.00107 * 359.97438 * 16 15 13 40 40 H 0.96995 * 119.99518 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.68542 * 249.21213 * 25 9 7 42 42 H 1.09000 * 109.68009 * 9.76945 * 25 9 7 43 43 H 1.07996 * 125.58360 * 179.86594 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2425 1.1289 -1.0583 6 6 5.5582 1.0293 -0.8510 7 6 6.5424 0.9577 -1.9441 8 8 7.7092 0.7190 -1.6972 9 7 6.1502 1.1569 -3.2181 10 6 7.0742 0.9264 -4.3400 11 6 7.0564 2.1648 -5.2432 12 8 5.7045 2.4766 -5.5879 13 6 4.8790 2.8158 -4.4712 14 1 5.3155 3.6611 -3.9392 15 6 3.4799 3.1900 -4.9647 16 7 3.5722 4.3382 -5.8697 17 6 2.4389 4.8535 -6.4398 18 1 1.4769 4.4132 -6.2226 19 6 2.5261 5.9419 -7.2970 20 7 3.6986 6.4783 -7.5622 21 14 0.9800 6.6453 -8.0741 22 1 0.4188 7.7003 -7.1926 23 1 1.3136 7.2315 -9.3971 24 1 -0.0216 5.5632 -8.2505 25 6 4.7835 1.6053 -3.5286 26 6 5.9017 0.9965 0.4563 27 16 4.4826 1.1090 1.4026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 8.0823 0.7651 -3.9581 34 1 6.7523 0.0530 -4.9071 35 1 7.5008 3.0079 -4.7141 36 1 7.6260 1.9622 -6.1502 37 1 3.0433 2.3436 -5.4949 38 1 2.8510 3.4480 -4.1127 39 1 4.4362 4.7336 -6.0652 40 1 3.7596 7.2385 -8.1614 41 1 4.2346 0.7995 -4.0160 42 1 4.2740 1.8937 -2.6092 43 1 6.9082 0.9170 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755017032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -64.493661 kcal Electronic energy + Delta-G solvation = -27738.227695 eV Core-core repulsion = 23718.129552 eV Total energy + Delta-G solvation = -4020.098143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05991 -40.50332 -39.42901 -38.63647 -36.59372 -35.85118 -33.89927 -32.75163 -31.87484 -29.67554 -29.24938 -27.17641 -27.08102 -26.19474 -24.80401 -23.67593 -22.55475 -21.68616 -20.70451 -19.59541 -19.20439 -17.90648 -17.67432 -17.44453 -17.36674 -16.79878 -16.76664 -16.65573 -16.47620 -16.06831 -15.77261 -15.46785 -15.15618 -15.00090 -14.84214 -14.38947 -14.30877 -13.99406 -13.79819 -13.37218 -13.15632 -13.11575 -12.93218 -12.77015 -12.61023 -12.34499 -12.29274 -12.06989 -11.90264 -11.72011 -11.39358 -11.23076 -10.94410 -10.83601 -10.70098 -10.39403 -10.11401 -9.65140 -8.99399 -7.91867 -5.21791 -0.65115 0.13996 0.46870 0.65168 1.48766 1.51715 1.60173 1.74791 2.03578 2.56243 2.58471 2.75953 3.09911 3.41973 3.50140 3.61932 3.82829 3.91354 3.96930 4.07706 4.09780 4.19179 4.20054 4.34925 4.44215 4.44533 4.47922 4.57991 4.60888 4.64547 4.66506 4.78352 4.92640 4.94017 4.96005 5.12102 5.34250 5.50029 6.05203 6.09249 6.20000 6.29086 6.30144 6.84278 7.35017 8.09004 8.34169 9.32096 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.003390 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.547755 B = 8258.314161 C =10464.224470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.134 3.866 4 C -0.005 4.005 5 N -0.445 5.445 6 C -0.020 4.020 7 C 0.592 3.408 8 O -0.565 6.565 9 N -0.599 5.599 10 C 0.079 3.921 11 C 0.047 3.953 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.046 0.954 15 C 0.166 3.834 16 N -0.741 5.741 17 C -0.246 4.246 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.076 3.924 26 C -0.227 4.227 27 S 0.341 5.659 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.126 0.874 37 H 0.027 0.973 38 H 0.049 0.951 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.075 0.925 42 H 0.150 0.850 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -14.453 23.194 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.055 3.945 4 C -0.282 4.282 5 N -0.163 5.163 6 C -0.155 4.155 7 C 0.380 3.620 8 O -0.445 6.445 9 N -0.331 5.331 10 C -0.043 4.043 11 C -0.030 4.030 12 O -0.307 6.307 13 C 0.023 3.977 14 H 0.064 0.936 15 C 0.039 3.961 16 N -0.383 5.383 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.806 3.194 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.047 4.047 26 C -0.370 4.370 27 S 0.599 5.401 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.166 0.834 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.177 -14.740 23.653 27.895 hybrid contribution 0.533 0.815 -1.655 1.920 sum -0.644 -13.925 21.999 26.043 Atomic orbital electron populations 1.22991 0.78287 1.04164 1.01549 1.87891 1.22153 1.26866 1.95800 1.21010 0.82882 0.86167 1.04486 1.27235 1.02206 1.05657 0.93150 1.66790 1.03147 1.14769 1.31620 1.20162 0.90023 1.11642 0.93706 1.17435 0.86453 0.76222 0.81920 1.90757 1.18314 1.51867 1.83598 1.48023 1.14261 1.65326 1.05459 1.22446 0.95557 0.99059 0.87232 1.23088 0.83767 0.95625 1.00541 1.88081 1.21441 1.88725 1.32468 1.22736 0.92110 0.95640 0.87252 0.93592 1.20718 0.92519 0.89697 0.93202 1.42433 1.06644 1.34879 1.54386 1.19685 0.88252 1.09496 1.20310 0.90170 1.25634 0.99834 0.99789 1.01665 1.69862 1.24473 1.26490 1.41393 0.85078 0.78844 0.78328 0.77123 1.21072 1.22386 1.19205 1.23266 0.82407 0.96133 1.02934 1.27010 1.08514 1.04835 0.96652 1.82449 0.90983 1.59372 1.07294 0.88485 0.91659 0.93334 0.87341 0.89918 0.87653 0.89366 0.93479 0.85595 0.95518 0.93295 0.79447 0.94082 0.90648 0.83384 0.78033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.95 10.69 -148.98 -1.59 -8.54 16 3 C 0.13 1.92 6.51 71.24 0.46 2.39 16 4 C 0.00 -0.09 6.97 88.58 0.62 0.53 16 5 N -0.45 -10.92 6.84 -180.83 -1.24 -12.15 16 6 C -0.02 -0.52 6.47 40.56 0.26 -0.26 16 7 C 0.59 18.16 7.66 86.62 0.66 18.82 16 8 O -0.57 -19.23 16.21 -4.14 -0.07 -19.29 16 9 N -0.60 -18.11 3.01 -820.58 -2.47 -20.59 16 10 C 0.08 2.15 6.65 86.35 0.57 2.73 16 11 C 0.05 1.40 6.98 72.08 0.50 1.90 16 12 O -0.39 -15.03 10.13 -148.98 -1.51 -16.54 16 13 C 0.08 3.00 2.88 30.83 0.09 3.09 16 14 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 15 C 0.17 6.99 5.96 86.38 0.51 7.51 16 16 N -0.74 -39.85 5.49 -343.47 -1.89 -41.74 16 17 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 21 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.08 2.34 5.44 86.50 0.47 2.81 16 26 C -0.23 -4.27 10.62 67.12 0.71 -3.56 16 27 S 0.34 4.19 22.92 -56.49 -1.29 2.89 16 28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.11 2.73 7.06 -2.39 -0.02 2.72 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.37 21.85 7.54 -92.70 -0.70 21.15 16 40 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.15 4.39 4.31 -24.80 -0.11 4.29 16 43 H 0.20 3.21 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -77.75 372.67 -0.08 -77.83 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.25 Total: 30.41 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.43 Total: 20.14 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -5.31 Total: -135.56 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -3.17 Total: -44.38 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.29 Total: 2.89 kcal Total: -77.75 -0.08 -77.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755017032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.335 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds