Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00013 * 2 1 4 4 C 1.50696 * 109.47220 * 179.97438 * 3 2 1 5 5 N 1.28646 * 124.72216 * 89.99582 * 4 3 2 6 6 C 1.33565 * 115.76618 * 179.97438 * 5 4 3 7 7 C 1.47269 * 123.14221 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00228 * 172.32136 * 7 6 5 9 9 N 1.34772 * 119.99749 * 352.32261 * 7 6 5 10 10 C 1.47157 * 120.98427 * 172.33752 * 9 7 6 11 11 C 1.53289 * 108.38386 * 129.48336 * 10 9 7 12 12 O 1.42967 * 109.22310 * 52.31024 * 11 10 9 13 13 C 1.42962 * 114.16248 * 297.41609 * 12 11 10 14 14 H 1.09004 * 109.55160 * 302.63027 * 13 12 11 15 15 C 1.53001 * 109.50995 * 182.50798 * 13 12 11 16 16 N 1.46492 * 109.47538 * 65.24787 * 15 13 12 17 17 C 1.36936 * 120.00256 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.38819 * 120.00473 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99230 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00317 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46964 * 59.99909 * 21 19 17 23 23 H 1.48499 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47210 * 300.00104 * 21 19 17 25 25 C 1.47157 * 120.98478 * 352.36355 * 9 7 6 26 26 C 1.35203 * 113.71630 * 0.25233 * 6 5 4 27 27 S 1.70777 * 124.71973 * 269.99515 * 4 3 2 28 28 H 1.09004 * 109.47503 * 60.00831 * 1 2 3 29 29 H 1.09010 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47701 * 300.00266 * 1 2 3 31 31 H 1.09000 * 109.47408 * 59.99617 * 3 2 1 32 32 H 1.09002 * 109.46997 * 299.99568 * 3 2 1 33 33 H 1.08995 * 109.68473 * 249.21377 * 10 9 7 34 34 H 1.09005 * 109.67648 * 9.72957 * 10 9 7 35 35 H 1.09008 * 109.50883 * 172.22861 * 11 10 9 36 36 H 1.08995 * 109.51970 * 292.37999 * 11 10 9 37 37 H 1.09006 * 109.46946 * 305.24936 * 15 13 12 38 38 H 1.09003 * 109.46919 * 185.25326 * 15 13 12 39 39 H 0.97000 * 120.00027 * 0.02562 * 16 15 13 40 40 H 0.97004 * 119.99425 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.68360 * 110.79160 * 25 9 7 42 42 H 1.09004 * 109.67750 * 350.23085 * 25 9 7 43 43 H 1.07997 * 125.58790 * 179.75209 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2433 1.1284 -1.0564 6 6 5.5585 1.0248 -0.8479 7 6 6.5432 0.9461 -1.9403 8 8 7.7327 0.9937 -1.6914 9 7 6.1260 0.8214 -3.2157 10 6 7.0767 0.9085 -4.3356 11 6 6.8618 -0.3047 -5.2476 12 8 5.4778 -0.3930 -5.5952 13 6 4.6069 -0.6031 -4.4811 14 1 4.9005 -1.5114 -3.9548 15 6 3.1666 -0.7432 -4.9778 16 7 3.0460 -1.9558 -5.7908 17 6 1.8399 -2.2909 -6.3460 18 1 0.9776 -1.6609 -6.1848 19 6 1.7255 -3.4402 -7.1160 20 7 2.7764 -4.2082 -7.3120 21 14 0.0805 -3.8969 -7.8739 22 1 -0.3644 -2.8103 -8.7830 23 1 0.2234 -5.1585 -8.6440 24 1 -0.9253 -4.0846 -6.7976 25 6 4.7063 0.5948 -3.5298 26 6 5.9010 0.9930 0.4596 27 16 4.4815 1.1101 1.4047 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 6.8997 1.8258 -4.8970 34 1 8.0970 0.9039 -3.9521 35 1 7.4579 -0.1897 -6.1530 36 1 7.1644 -1.2118 -4.7244 37 1 2.9040 0.1261 -5.5808 38 1 2.4926 -0.8098 -4.1237 39 1 3.8204 -2.5218 -5.9353 40 1 2.6966 -5.0112 -7.8504 41 1 4.2907 1.4805 -4.0101 42 1 4.1570 0.3818 -2.6127 43 1 6.9068 0.9091 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755017033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -64.445076 kcal Electronic energy + Delta-G solvation = -27905.599548 eV Core-core repulsion = 23885.503512 eV Total energy + Delta-G solvation = -4020.096036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06290 -40.50981 -39.43619 -38.63430 -36.60299 -35.85912 -33.91245 -32.74866 -31.88864 -29.67880 -29.24287 -27.18225 -27.08862 -26.18886 -24.81168 -23.66870 -22.57552 -21.68882 -20.70156 -19.59356 -19.20814 -17.91335 -17.59877 -17.53341 -17.37209 -16.82354 -16.74282 -16.66219 -16.46447 -16.08355 -15.76234 -15.46322 -15.16116 -14.98763 -14.85115 -14.40724 -14.31018 -14.00611 -13.75761 -13.39435 -13.15863 -13.11778 -12.92566 -12.72642 -12.62424 -12.33567 -12.30391 -12.10728 -11.89688 -11.73258 -11.39787 -11.23968 -10.94065 -10.83974 -10.71620 -10.36071 -10.11315 -9.65716 -9.00327 -7.91956 -5.22176 -0.65199 0.14617 0.46922 0.64891 1.48279 1.53059 1.58921 1.74020 2.06846 2.56208 2.58645 2.73574 3.11602 3.41735 3.49566 3.61943 3.83266 3.90969 3.96303 4.07065 4.10021 4.19392 4.19889 4.33890 4.44117 4.44416 4.48945 4.55771 4.60359 4.64877 4.65547 4.77899 4.92524 4.96029 4.96706 5.10705 5.34547 5.49326 6.04928 6.12137 6.18810 6.28283 6.30211 6.84276 7.34300 8.07624 8.33202 9.31869 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.003674 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.211222 B = 7618.861949 C =10126.521435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.134 3.866 4 C -0.005 4.005 5 N -0.445 5.445 6 C -0.021 4.021 7 C 0.592 3.408 8 O -0.565 6.565 9 N -0.599 5.599 10 C 0.080 3.920 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.082 3.918 14 H 0.040 0.960 15 C 0.167 3.833 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.979 3.021 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.273 1.273 25 C 0.076 3.924 26 C -0.227 4.227 27 S 0.340 5.660 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.046 0.954 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 16.311 22.376 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.283 4.283 5 N -0.163 5.163 6 C -0.156 4.156 7 C 0.380 3.620 8 O -0.445 6.445 9 N -0.331 5.331 10 C -0.042 4.042 11 C -0.032 4.032 12 O -0.307 6.307 13 C 0.023 3.977 14 H 0.058 0.942 15 C 0.040 3.960 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.098 0.902 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.807 3.193 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.199 1.199 25 C -0.048 4.048 26 C -0.370 4.370 27 S 0.598 5.402 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.164 0.836 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.473 16.272 22.835 28.078 hybrid contribution 0.403 -0.740 -1.582 1.792 sum 1.876 15.531 21.254 26.390 Atomic orbital electron populations 1.22969 0.78309 1.03952 1.01648 1.87924 1.22178 1.27205 1.95800 1.21040 0.82805 0.86078 1.04610 1.27278 1.02286 1.05581 0.93124 1.66801 1.03063 1.14815 1.31632 1.20171 0.90063 1.11631 0.93707 1.17429 0.86821 0.75862 0.81910 1.90754 1.16912 1.53256 1.83572 1.48025 1.09793 1.69801 1.05449 1.22454 0.94753 0.99844 0.87198 1.23105 0.82953 0.96517 1.00580 1.88076 1.16916 1.93155 1.32544 1.22620 0.91218 0.96547 0.87284 0.94159 1.20681 0.91748 0.89458 0.94067 1.42442 1.09664 1.25929 1.60348 1.19647 0.89156 1.05282 1.23790 0.90206 1.25650 1.01109 0.98042 1.02114 1.69858 1.30678 1.16522 1.45200 0.85133 0.79090 0.76862 0.78194 1.20276 1.22221 1.19930 1.23178 0.81130 0.97682 1.02765 1.27006 1.08496 1.04876 0.96666 1.82443 0.91000 1.59404 1.07337 0.93205 0.89279 0.91168 0.87076 0.89635 0.89034 0.87643 0.85397 0.93749 0.95271 0.93637 0.79579 0.94060 0.90164 0.83601 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.17 10.69 -148.98 -1.59 -9.76 16 3 C 0.13 1.94 6.51 71.23 0.46 2.40 16 4 C -0.01 -0.10 6.97 88.57 0.62 0.52 16 5 N -0.44 -11.01 6.83 -180.83 -1.24 -12.25 16 6 C -0.02 -0.54 6.47 40.56 0.26 -0.27 16 7 C 0.59 18.22 7.66 86.62 0.66 18.89 16 8 O -0.56 -19.21 16.21 -4.11 -0.07 -19.27 16 9 N -0.60 -18.18 3.02 -821.39 -2.48 -20.66 16 10 C 0.08 2.15 6.66 86.35 0.57 2.72 16 11 C 0.05 1.37 6.98 72.08 0.50 1.87 16 12 O -0.39 -15.13 10.33 -148.98 -1.54 -16.67 16 13 C 0.08 3.13 2.81 30.69 0.09 3.21 16 14 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 15 C 0.17 7.29 5.93 86.38 0.51 7.80 16 16 N -0.74 -40.70 5.55 -343.45 -1.91 -42.60 16 17 C -0.25 -14.40 9.99 84.04 0.84 -13.56 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -62.01 13.06 21.65 0.28 -61.72 16 21 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.08 2.38 5.41 86.35 0.47 2.84 16 26 C -0.23 -4.33 10.62 67.12 0.71 -3.62 16 27 S 0.34 4.25 22.92 -56.49 -1.29 2.95 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.11 2.71 7.06 -2.38 -0.02 2.70 16 35 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.37 22.18 7.67 -92.71 -0.71 21.47 16 40 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.15 4.58 4.30 -25.40 -0.11 4.47 16 43 H 0.20 3.25 8.04 -2.91 -0.02 3.23 16 Total: -1.00 -78.78 372.93 -0.15 -78.93 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.23 Total: 31.63 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.42 Total: 20.31 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -5.34 Total: -137.23 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -3.20 Total: -45.70 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.29 Total: 2.95 kcal Total: -78.78 -0.15 -78.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755017033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.490 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds