Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21234 * 119.99923 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00197 * 179.97438 * 17 16 15 20 20 C 1.34782 * 120.00244 * 180.02562 * 19 17 16 21 21 O 1.21534 * 119.99653 * 359.97438 * 20 19 17 22 22 N 1.34774 * 120.00244 * 179.97438 * 20 19 17 23 23 C 1.46496 * 120.00075 * 180.02562 * 22 20 19 24 24 C 1.52991 * 109.47386 * 60.00073 * 23 22 20 25 25 C 1.53005 * 109.46849 * 180.02562 * 23 22 20 26 26 C 1.53006 * 109.46831 * 299.99530 * 23 22 20 27 27 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 28 28 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 29 29 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 30 30 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 31 31 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 32 32 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 33 33 H 0.97000 * 120.00170 * 359.97438 * 19 17 16 34 34 H 0.97006 * 119.99704 * 359.97438 * 22 20 19 35 35 H 1.08998 * 109.47714 * 60.00014 * 24 23 22 36 36 H 1.08998 * 109.47378 * 180.02562 * 24 23 22 37 37 H 1.09008 * 109.46915 * 299.99766 * 24 23 22 38 38 H 1.09002 * 109.47417 * 60.00004 * 25 23 22 39 39 H 1.09009 * 109.46966 * 179.97438 * 25 23 22 40 40 H 1.08998 * 109.46966 * 299.99199 * 25 23 22 41 41 H 1.08999 * 109.47028 * 60.00373 * 26 23 22 42 42 H 1.08999 * 109.46873 * 180.02562 * 26 23 22 43 43 H 1.08993 * 109.47287 * 300.00125 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1023 -5.5549 -0.0069 19 7 4.2938 -5.8968 0.0029 20 6 4.1268 -7.2342 0.0008 21 8 3.0071 -7.7067 -0.0045 22 7 5.2015 -8.0476 0.0047 23 6 5.0200 -9.5012 0.0019 24 6 4.2469 -9.9163 -1.2514 25 6 6.3882 -10.1860 0.0080 26 6 4.2353 -9.9196 1.2471 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.5753 4.9451 0.0298 31 1 3.9654 -3.2905 -0.8867 32 1 3.9562 -3.2921 0.8932 33 1 5.1875 -5.5197 0.0068 34 1 6.0952 -7.6704 0.0087 35 1 4.8059 -9.6183 -2.1384 36 1 4.1115 -10.9978 -1.2532 37 1 3.2722 -9.4284 -1.2552 38 1 6.9386 -9.8903 0.9012 39 1 6.2531 -11.2677 0.0064 40 1 6.9475 -9.8881 -0.8788 41 1 3.2606 -9.4317 1.2433 42 1 4.1006 -11.0012 1.2453 43 1 4.7861 -9.6239 2.1400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357091557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -4.769891 kcal Electronic energy + Delta-G solvation = -26607.656125 eV Core-core repulsion = 22622.440551 eV Total energy + Delta-G solvation = -3985.215575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45807 -40.98378 -39.19319 -36.70401 -34.84722 -33.98370 -33.62293 -32.12329 -30.37815 -29.80335 -27.80197 -27.56659 -26.77580 -25.39598 -23.58103 -21.51486 -20.78484 -20.41405 -20.04095 -19.14525 -18.24821 -17.40523 -16.67173 -16.42114 -15.95565 -15.34147 -15.18895 -15.12175 -14.89054 -14.38921 -14.12974 -14.07007 -13.85293 -13.66567 -13.15758 -12.90930 -12.85412 -12.65366 -12.59488 -12.47298 -12.43033 -11.98771 -11.97218 -11.56452 -11.54822 -11.21147 -10.93169 -10.82978 -10.44482 -10.28112 -9.94426 -9.75782 -9.63056 -9.47902 -9.44989 -9.15298 -8.73315 -8.45378 -7.47000 -7.14682 -4.88897 1.41648 1.87646 2.22143 2.46336 2.84924 3.05088 3.52457 3.54650 3.54889 3.82511 4.00168 4.09079 4.30102 4.36110 4.38747 4.51121 4.64980 5.01348 5.06332 5.09922 5.22350 5.28891 5.35286 5.37492 5.41204 5.44854 5.56445 5.61737 5.71965 5.82701 5.90815 5.92440 6.06480 6.19828 6.25282 6.31014 6.59330 7.07247 7.20789 7.35653 7.47193 7.79923 8.00328 8.14284 8.30031 8.50942 9.91307 10.04102 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002139 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.353844 B =13089.256260 C =13944.193149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.510 5.510 3 C 0.346 3.654 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.063 3.937 7 N -0.806 5.806 8 Si 1.114 2.886 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.281 1.281 12 N -0.416 5.416 13 N -0.273 5.273 14 C 0.050 3.950 15 S 0.037 5.963 16 C -0.138 4.138 17 C 0.539 3.461 18 O -0.452 6.452 19 N -0.689 5.689 20 C 0.697 3.303 21 O -0.524 6.524 22 N -0.733 5.733 23 C 0.184 3.816 24 C -0.167 4.167 25 C -0.154 4.154 26 C -0.167 4.167 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.284 0.716 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.412 0.588 34 H 0.398 0.602 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -24.407 -0.008 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.211 5.211 3 C 0.103 3.897 4 C -0.532 4.532 5 H 0.102 0.898 6 C -0.160 4.160 7 N -0.430 5.430 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.266 5.266 13 N -0.117 5.117 14 C -0.324 4.324 15 S 0.262 5.738 16 C -0.290 4.290 17 C 0.323 3.677 18 O -0.319 6.319 19 N -0.355 5.355 20 C 0.397 3.603 21 O -0.396 6.396 22 N -0.390 5.390 23 C 0.099 3.901 24 C -0.225 4.225 25 C -0.212 4.212 26 C -0.225 4.225 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.247 0.753 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.719 -24.971 -0.132 25.860 hybrid contribution -0.967 0.595 0.182 1.150 sum 5.752 -24.376 0.050 25.046 Atomic orbital electron populations 1.21574 0.77595 1.03090 1.02182 1.45802 1.06490 1.04755 1.64077 1.21716 0.85065 0.89083 0.93840 1.19410 0.97483 0.87217 1.49042 0.89844 1.27375 1.08520 0.91275 0.88782 1.70669 1.21618 1.18465 1.32211 0.82686 0.70571 0.72156 0.80355 1.24137 1.18606 1.20718 1.73959 1.15944 1.00891 1.35769 1.74213 1.15394 1.05780 1.16331 1.25739 0.91088 0.94062 1.21463 1.85333 1.04569 0.88540 1.95358 1.23461 1.03298 0.92580 1.09670 1.20013 0.84160 0.87744 0.75784 1.90863 1.22994 1.76420 1.41620 1.44086 1.11966 1.06490 1.73002 1.16094 0.85481 0.80499 0.78205 1.91010 1.22448 1.73922 1.52175 1.45479 1.07578 1.06391 1.79592 1.20253 0.95975 0.77455 0.96438 1.22268 1.02414 1.01697 0.96102 1.22090 0.95162 1.01423 1.02537 1.22270 1.02360 1.01679 0.96168 0.91996 0.91025 0.90178 0.90500 0.85467 0.85495 0.75277 0.76819 0.92679 0.91733 0.90036 0.91812 0.90561 0.91809 0.90033 0.91736 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.89 59.85 0.65 2.42 16 2 N -0.51 -11.66 3.26 -123.18 -0.40 -12.06 16 3 C 0.35 9.06 7.27 -154.81 -1.13 7.93 16 4 C -0.49 -12.98 9.50 -38.31 -0.36 -13.34 16 5 H 0.08 2.15 7.46 -52.49 -0.39 1.76 16 6 C 0.06 1.68 5.52 -17.29 -0.10 1.59 16 7 N -0.81 -21.35 13.65 55.56 0.76 -20.59 16 8 Si 1.11 27.38 25.90 -169.99 -4.40 22.98 16 9 H -0.31 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.26 -6.56 6.76 56.52 0.38 -6.18 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 N -0.42 -11.17 7.52 31.26 0.23 -10.94 16 13 N -0.27 -6.63 11.62 30.89 0.36 -6.28 16 14 C 0.05 1.10 8.09 -87.28 -0.71 0.40 16 15 S 0.04 0.64 20.92 -107.50 -2.25 -1.61 16 16 C -0.14 -1.84 5.71 36.00 0.21 -1.64 16 17 C 0.54 7.18 7.79 -10.99 -0.09 7.09 16 18 O -0.45 -8.03 14.26 -18.21 -0.26 -8.29 16 19 N -0.69 -6.53 5.24 -15.78 -0.08 -6.61 16 20 C 0.70 7.71 7.92 -86.92 -0.69 7.02 16 21 O -0.52 -8.19 10.95 -18.47 -0.20 -8.39 16 22 N -0.73 -5.13 5.11 -52.43 -0.27 -5.40 16 23 C 0.18 1.27 1.06 -131.82 -0.14 1.13 16 24 C -0.17 -1.34 8.40 37.15 0.31 -1.03 16 25 C -0.15 -0.62 8.59 37.16 0.32 -0.30 16 26 C -0.17 -1.34 8.40 37.16 0.31 -1.03 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 29 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 30 H 0.28 7.15 8.72 -40.82 -0.36 6.79 16 31 H 0.13 1.57 8.14 -51.91 -0.42 1.14 16 32 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 33 H 0.41 2.07 8.71 -40.82 -0.36 1.72 16 34 H 0.40 1.48 8.49 -40.82 -0.35 1.13 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.93 6.17 -51.92 -0.32 0.61 16 38 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.93 6.16 -51.93 -0.32 0.61 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -36.30 370.99 -8.26 -44.56 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.93 Total: -3.21 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -1.40 Total: 10.25 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.60 Total: -61.88 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.46 Total: -16.68 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.40 Total: 22.98 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.25 Total: -1.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.30 -8.26 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357091557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.785 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds