Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47302 * 2 1 4 4 N 1.46502 * 109.47141 * 119.99732 * 2 1 3 5 5 C 1.34777 * 119.99913 * 301.12948 * 4 2 1 6 6 O 1.21585 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99701 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99931 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47065 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99740 * 180.02562 * 9 8 7 12 12 C 1.37104 * 120.00219 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99443 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00233 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47436 * 60.00446 * 16 14 12 18 18 H 1.48499 * 109.47187 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47346 * 300.00134 * 16 14 12 20 20 C 1.50701 * 109.47566 * 239.99823 * 2 1 3 21 21 C 1.38252 * 119.96605 * 264.76471 * 20 2 1 22 22 C 1.38210 * 120.07226 * 179.97438 * 21 20 2 23 23 C 1.38406 * 119.99975 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.04023 * 179.97438 * 23 22 21 25 25 C 1.38654 * 119.93034 * 0.02562 * 23 22 21 26 26 F 1.35096 * 120.03452 * 180.02562 * 25 23 22 27 27 C 1.38212 * 119.96019 * 84.48144 * 20 2 1 28 28 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47178 * 60.00487 * 1 2 3 30 30 H 1.09000 * 109.47046 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.47105 * 59.99209 * 3 2 1 32 32 H 1.08992 * 109.47333 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46459 * 300.00437 * 3 2 1 34 34 H 0.97005 * 119.99990 * 121.13388 * 4 2 1 35 35 H 0.96997 * 120.00476 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46796 * 299.99471 * 8 7 5 37 37 H 1.09001 * 109.47032 * 59.99541 * 8 7 5 38 38 H 0.97003 * 120.00254 * 359.97438 * 11 9 8 39 39 H 0.97000 * 119.99896 * 179.97438 * 15 14 12 40 40 H 1.08006 * 119.96122 * 359.97156 * 21 20 2 41 41 H 1.08003 * 119.99947 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00112 * 0.02921 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6740 -0.2435 2.4202 6 8 0.9585 0.7333 2.5316 7 7 2.1237 -0.8785 3.5206 8 6 1.7490 -0.3928 4.8511 9 6 2.3783 -1.2709 5.9019 10 8 3.0711 -2.2102 5.5720 11 7 2.1703 -1.0130 7.2083 12 6 2.7423 -1.8120 8.1644 13 1 3.3599 -2.6479 7.8705 14 6 2.5283 -1.5458 9.5111 15 7 1.7773 -0.5285 9.8686 16 14 3.3083 -2.6341 10.8137 17 1 4.7859 -2.5958 10.6709 18 1 2.9280 -2.1422 12.1622 19 1 2.8305 -4.0299 10.6435 20 6 2.0324 -0.7104 -1.2304 21 6 2.3657 -2.0507 -1.1663 22 6 2.8262 -2.7045 -2.2935 23 6 2.9546 -2.0174 -3.4881 24 9 3.4052 -2.6556 -4.5903 25 6 2.6214 -0.6730 -3.5522 26 9 2.7455 -0.0004 -4.7172 27 6 2.1540 -0.0228 -2.4232 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.5895 -1.4696 1.1073 35 1 2.6948 -1.6575 3.4318 36 1 2.1002 0.6314 4.9762 37 1 0.6644 -0.4204 4.9558 38 1 1.6159 -0.2620 7.4722 39 1 1.6276 -0.3429 10.8089 40 1 2.2661 -2.5872 -0.2343 41 1 3.0858 -3.7516 -2.2422 42 1 1.8894 1.0231 -2.4730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358270337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -126.224533 kcal Electronic energy + Delta-G solvation = -28682.475495 eV Core-core repulsion = 24105.860115 eV Total energy + Delta-G solvation = -4576.615381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.85498 -48.93069 -40.84481 -39.38658 -38.25141 -36.17213 -34.42560 -33.73461 -32.36715 -31.40308 -30.96766 -29.80947 -27.47927 -27.40933 -24.70287 -24.07576 -23.29321 -21.42949 -20.08324 -19.52388 -18.96298 -18.22139 -17.95436 -17.62015 -17.25887 -16.70450 -16.00717 -15.69659 -15.51957 -15.34052 -15.04712 -14.82843 -14.69193 -14.55888 -14.42158 -14.28084 -13.95105 -13.79238 -13.52061 -13.40455 -13.01138 -12.52786 -12.34520 -12.21203 -12.14781 -11.92812 -11.81128 -11.64842 -11.42007 -11.28318 -11.11908 -10.52617 -10.33429 -9.85653 -9.64755 -9.59289 -9.34243 -9.02361 -8.68822 -8.65448 -8.12286 -6.53404 -3.95620 0.40276 0.50220 2.62217 2.87020 3.11955 3.20180 3.23828 3.31638 3.31753 3.72665 3.87720 3.95760 4.05349 4.09769 4.30213 4.50127 4.59923 4.75626 4.86844 4.91857 5.15211 5.17667 5.25277 5.35487 5.46164 5.50122 5.51826 5.64528 5.73668 5.78143 5.88210 5.97009 6.05071 6.14058 6.20793 6.24696 6.47720 6.71957 6.99487 7.43765 7.89943 8.15539 8.42751 8.72431 9.02456 9.37148 9.84902 10.63313 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.001898 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.386681 B =14752.049091 C =15595.553687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 C -0.166 4.166 4 N -0.745 5.745 5 C 0.709 3.291 6 O -0.590 6.590 7 N -0.724 5.724 8 C 0.129 3.871 9 C 0.427 3.573 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.061 4.061 21 C -0.098 4.098 22 C -0.117 4.117 23 C 0.064 3.936 24 F -0.129 7.129 25 C 0.072 3.928 26 F -0.128 7.128 27 C -0.116 4.116 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 0.730 -23.969 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.151 3.849 3 C -0.224 4.224 4 N -0.403 5.403 5 C 0.409 3.591 6 O -0.469 6.469 7 N -0.381 5.381 8 C 0.001 3.999 9 C 0.213 3.787 10 O -0.486 6.486 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.062 4.062 21 C -0.117 4.117 22 C -0.136 4.136 23 C 0.043 3.957 24 F -0.108 7.108 25 C 0.052 3.948 26 F -0.106 7.106 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.184 1.083 -23.912 23.966 hybrid contribution 0.725 -0.846 0.322 1.160 sum -0.459 0.237 -23.590 23.595 Atomic orbital electron populations 1.22293 0.92590 1.02837 1.04237 1.18827 0.94515 0.91548 0.80054 1.22357 1.01404 0.94557 1.04086 1.45316 1.56319 1.34707 1.03966 1.15758 0.80445 0.82773 0.80082 1.90844 1.42071 1.28162 1.85833 1.44802 1.54897 1.34295 1.04082 1.20784 1.00256 0.97954 0.80930 1.19765 0.86927 0.88127 0.83867 1.90490 1.44032 1.33057 1.80982 1.41786 1.44228 1.28456 1.03854 1.19670 1.28123 1.10455 0.85264 0.87750 1.25325 0.96917 0.97131 0.98344 1.69605 1.37396 1.27880 1.18542 0.85870 0.79435 0.79745 0.78897 1.19783 1.20858 1.19786 1.19829 0.97965 0.93886 0.94506 1.20952 0.98177 0.93808 0.98713 1.21101 1.00565 1.01416 0.90516 1.17734 1.03404 0.89690 0.84830 1.91540 1.86679 1.81429 1.51107 1.17622 1.04671 0.89184 0.83300 1.91543 1.93777 1.79744 1.45537 1.20939 1.00554 1.01618 0.90346 0.92402 0.91806 0.88841 0.89113 0.92266 0.91692 0.76874 0.75657 0.89982 0.89966 0.77008 0.91519 0.83943 0.83280 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.37 37.15 0.31 -1.24 16 2 C 0.24 2.18 0.89 -132.97 -0.12 2.06 16 3 C -0.17 -1.56 7.86 37.16 0.29 -1.27 16 4 N -0.74 -7.72 4.88 -53.50 -0.26 -7.98 16 5 C 0.71 10.10 7.98 -86.92 -0.69 9.40 16 6 O -0.59 -9.85 12.55 5.29 0.07 -9.79 16 7 N -0.72 -11.11 5.53 -66.41 -0.37 -11.48 16 8 C 0.13 2.26 6.15 -5.19 -0.03 2.22 16 9 C 0.43 9.45 7.85 -10.99 -0.09 9.37 16 10 O -0.60 -14.80 15.24 5.55 0.08 -14.71 16 11 N -0.55 -13.26 5.29 -10.96 -0.06 -13.31 16 12 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 13 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.50 13.05 55.50 0.72 -22.77 16 16 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.06 -0.47 4.80 -104.63 -0.50 -0.97 16 21 C -0.10 -0.66 9.02 -39.59 -0.36 -1.02 16 22 C -0.12 -0.80 10.02 -39.53 -0.40 -1.19 16 23 C 0.06 0.55 7.31 -39.37 -0.29 0.26 16 24 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 25 C 0.07 0.64 7.31 -39.36 -0.29 0.35 16 26 F -0.13 -1.26 17.18 2.25 0.04 -1.22 16 27 C -0.12 -0.87 9.12 -39.52 -0.36 -1.23 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.14 6.08 -51.93 -0.32 0.83 16 31 H 0.09 1.10 6.25 -51.93 -0.32 0.77 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.47 6.52 -51.93 -0.34 0.13 16 34 H 0.40 3.28 6.41 -40.82 -0.26 3.01 16 35 H 0.41 6.09 7.45 -40.82 -0.30 5.79 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.40 9.21 7.90 -40.82 -0.32 8.88 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.14 0.77 6.41 -52.48 -0.34 0.43 16 41 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.15 0.92 6.34 -52.49 -0.33 0.58 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -30.73 361.24 -6.66 -37.38 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -4.58 Total: 15.46 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.76 Total: 9.02 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.04 Total: -55.54 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.15 Total: -24.50 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.73 -6.66 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.842 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds