Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47302 * 2 1 4 4 N 1.46502 * 109.47141 * 119.99732 * 2 1 3 5 5 C 1.34777 * 119.99913 * 301.12948 * 4 2 1 6 6 O 1.21585 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99701 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99931 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47065 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99740 * 180.02562 * 9 8 7 12 12 C 1.37104 * 120.00219 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99443 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00233 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47436 * 60.00446 * 16 14 12 18 18 H 1.48499 * 109.47187 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47346 * 300.00134 * 16 14 12 20 20 C 1.50701 * 109.47566 * 239.99823 * 2 1 3 21 21 C 1.38252 * 119.96605 * 264.76471 * 20 2 1 22 22 C 1.38210 * 120.07226 * 179.97438 * 21 20 2 23 23 C 1.38406 * 119.99975 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.04023 * 179.97438 * 23 22 21 25 25 C 1.38654 * 119.93034 * 0.02562 * 23 22 21 26 26 F 1.35096 * 120.03452 * 180.02562 * 25 23 22 27 27 C 1.38212 * 119.96019 * 84.48144 * 20 2 1 28 28 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47178 * 60.00487 * 1 2 3 30 30 H 1.09000 * 109.47046 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.47105 * 59.99209 * 3 2 1 32 32 H 1.08992 * 109.47333 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46459 * 300.00437 * 3 2 1 34 34 H 0.97005 * 119.99990 * 121.13388 * 4 2 1 35 35 H 0.96997 * 120.00476 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46796 * 299.99471 * 8 7 5 37 37 H 1.09001 * 109.47032 * 59.99541 * 8 7 5 38 38 H 0.97003 * 120.00254 * 359.97438 * 11 9 8 39 39 H 0.97000 * 119.99896 * 179.97438 * 15 14 12 40 40 H 1.08006 * 119.96122 * 359.97156 * 21 20 2 41 41 H 1.08003 * 119.99947 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00112 * 0.02921 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6740 -0.2435 2.4202 6 8 0.9585 0.7333 2.5316 7 7 2.1237 -0.8785 3.5206 8 6 1.7490 -0.3928 4.8511 9 6 2.3783 -1.2709 5.9019 10 8 3.0711 -2.2102 5.5720 11 7 2.1703 -1.0130 7.2083 12 6 2.7423 -1.8120 8.1644 13 1 3.3599 -2.6479 7.8705 14 6 2.5283 -1.5458 9.5111 15 7 1.7773 -0.5285 9.8686 16 14 3.3083 -2.6341 10.8137 17 1 4.7859 -2.5958 10.6709 18 1 2.9280 -2.1422 12.1622 19 1 2.8305 -4.0299 10.6435 20 6 2.0324 -0.7104 -1.2304 21 6 2.3657 -2.0507 -1.1663 22 6 2.8262 -2.7045 -2.2935 23 6 2.9546 -2.0174 -3.4881 24 9 3.4052 -2.6556 -4.5903 25 6 2.6214 -0.6730 -3.5522 26 9 2.7455 -0.0004 -4.7172 27 6 2.1540 -0.0228 -2.4232 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.5895 -1.4696 1.1073 35 1 2.6948 -1.6575 3.4318 36 1 2.1002 0.6314 4.9762 37 1 0.6644 -0.4204 4.9558 38 1 1.6159 -0.2620 7.4722 39 1 1.6276 -0.3429 10.8089 40 1 2.2661 -2.5872 -0.2343 41 1 3.0858 -3.7516 -2.2422 42 1 1.8894 1.0231 -2.4730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358270337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -146.954073 kcal Electronic energy + Delta-G solvation = -28683.374396 eV Core-core repulsion = 24105.860115 eV Total energy + Delta-G solvation = -4577.514281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.54257 -49.62637 -41.74872 -40.49062 -39.78652 -37.08370 -36.14313 -35.20744 -33.41887 -33.13288 -31.67322 -30.49215 -28.92711 -28.21727 -26.38667 -24.91302 -23.91176 -22.40910 -21.34825 -20.90580 -20.04832 -19.86090 -18.92329 -18.36196 -17.96556 -17.39164 -17.38313 -17.02351 -16.78343 -16.41178 -16.05188 -15.99858 -15.83165 -15.65845 -15.48245 -15.25925 -15.09653 -14.87944 -14.67666 -14.17331 -13.89014 -13.73567 -13.62785 -13.51233 -13.11366 -13.06587 -12.88857 -12.72070 -12.55871 -12.44527 -12.22010 -12.12722 -11.98201 -11.53469 -10.99455 -10.51510 -10.39165 -10.12315 -10.07517 -9.88781 -9.66951 -8.48515 -5.98474 -0.22597 -0.06106 1.39968 1.43954 1.53408 1.60512 1.93861 2.17738 2.27639 2.30730 2.70837 3.04290 3.19009 3.22568 3.28500 3.38002 3.54164 3.90653 4.01171 4.03861 4.17726 4.25579 4.48359 4.52705 4.57753 4.65148 4.76164 4.79484 4.83356 4.87047 4.96810 4.99643 5.13010 5.27764 5.39936 5.41973 5.48991 5.61705 5.64815 5.94715 5.99260 6.51172 7.06313 7.07785 7.46736 7.60992 7.98095 8.68039 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.001898 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.386681 B =14752.049091 C =15595.553687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 C -0.165 4.165 4 N -0.730 5.730 5 C 0.710 3.290 6 O -0.614 6.614 7 N -0.726 5.726 8 C 0.144 3.856 9 C 0.434 3.566 10 O -0.624 6.624 11 N -0.561 5.561 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.061 4.061 21 C -0.093 4.093 22 C -0.110 4.110 23 C 0.050 3.950 24 F -0.140 7.140 25 C 0.058 3.942 26 F -0.138 7.138 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.407 0.593 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.279 0.721 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 0.207 -24.540 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.152 3.848 3 C -0.223 4.223 4 N -0.388 5.388 5 C 0.410 3.590 6 O -0.495 6.495 7 N -0.383 5.383 8 C 0.015 3.985 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.196 5.196 12 C -0.465 4.465 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.819 3.181 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.062 4.062 21 C -0.111 4.111 22 C -0.128 4.128 23 C 0.030 3.970 24 F -0.118 7.118 25 C 0.038 3.962 26 F -0.117 7.117 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.176 0.824 41 H 0.189 0.811 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.064 0.557 -24.527 24.556 hybrid contribution 0.678 -0.676 0.399 1.037 sum -0.386 -0.119 -24.128 24.131 Atomic orbital electron populations 1.22243 0.92751 1.02896 1.03798 1.18875 0.94405 0.91575 0.79964 1.22329 1.01419 0.94619 1.03895 1.45226 1.55728 1.34805 1.03058 1.15816 0.80149 0.82380 0.80656 1.90846 1.43118 1.29220 1.86290 1.44722 1.55348 1.34605 1.03639 1.20553 1.00296 0.97093 0.80543 1.20481 0.85661 0.87759 0.84026 1.90467 1.44936 1.34306 1.81498 1.41843 1.44785 1.28621 1.04387 1.19684 1.29298 1.11023 0.86522 0.89559 1.26111 0.97097 0.98270 0.99753 1.69673 1.37971 1.28801 1.19169 0.84942 0.78515 0.78045 0.76579 1.19532 1.19793 1.19494 1.19662 0.98610 0.94240 0.93715 1.21141 0.97215 0.93460 0.99330 1.21309 0.99574 1.02343 0.89577 1.18013 1.03939 0.89888 0.85173 1.91511 1.86922 1.81615 1.51786 1.17791 1.05664 0.89428 0.83362 1.91514 1.93986 1.79982 1.46182 1.21019 0.99794 1.02229 0.89733 0.92079 0.89942 0.91561 0.91842 0.92175 0.89370 0.75469 0.75363 0.89087 0.88963 0.76708 0.91134 0.82361 0.81131 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.37 71.98 0.60 -2.18 16 2 C 0.24 3.91 0.89 2.86 0.00 3.91 16 3 C -0.16 -2.85 7.86 71.98 0.57 -2.28 16 4 N -0.73 -13.81 4.88 -441.44 -2.15 -15.96 16 5 C 0.71 19.37 7.98 179.05 1.43 20.80 16 6 O -0.61 -20.11 12.55 -3.98 -0.05 -20.16 16 7 N -0.73 -21.50 5.53 -482.28 -2.67 -24.17 16 8 C 0.14 4.92 6.15 85.63 0.53 5.45 16 9 C 0.43 19.16 7.85 87.66 0.69 19.85 16 10 O -0.62 -30.87 15.24 -3.07 -0.05 -30.92 16 11 N -0.56 -27.36 5.29 -306.99 -1.62 -28.99 16 12 C -0.34 -18.10 9.68 84.04 0.81 -17.29 16 13 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 15 N -0.92 -47.97 13.05 21.66 0.28 -47.69 16 16 Si 1.00 41.07 29.55 68.60 2.03 43.10 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 C -0.06 -0.80 4.80 -19.87 -0.10 -0.89 16 21 C -0.09 -1.01 9.02 22.27 0.20 -0.81 16 22 C -0.11 -1.22 10.02 22.30 0.22 -1.00 16 23 C 0.05 0.79 7.31 22.41 0.16 0.96 16 24 F -0.14 -2.64 17.18 44.97 0.77 -1.86 16 25 C 0.06 0.93 7.31 22.41 0.16 1.10 16 26 F -0.14 -2.63 17.18 44.97 0.77 -1.86 16 27 C -0.11 -1.41 9.12 22.31 0.20 -1.21 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.57 6.08 -2.39 -0.01 1.56 16 31 H 0.06 1.49 6.25 -2.39 -0.01 1.48 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.08 6.52 -2.39 -0.02 1.06 16 34 H 0.41 5.78 6.41 -92.70 -0.59 5.19 16 35 H 0.41 11.80 7.45 -92.71 -0.69 11.10 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 39 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.16 1.19 6.41 -2.91 -0.02 1.17 16 41 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.17 1.59 6.34 -2.91 -0.02 1.57 16 Total: -1.00 -66.00 361.24 2.38 -63.63 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.89 Total: 38.61 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 5.96 Total: 26.27 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.16 Total: -116.80 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.10 Total: -51.08 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.55 Total: -3.72 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -66.00 2.38 -63.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.328 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds