Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08990 * 109.47173 * 304.99823 * 3 2 1 5 5 N 1.46499 * 109.46843 * 65.00023 * 3 2 1 6 6 C 1.34784 * 119.99893 * 274.99901 * 5 3 2 7 7 O 1.21588 * 119.99858 * 359.97438 * 6 5 3 8 8 N 1.34773 * 119.99935 * 179.72905 * 6 5 3 9 9 C 1.46496 * 119.99973 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47316 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99956 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99967 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99918 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00520 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00226 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47372 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46983 * 120.00211 * 17 15 13 20 20 H 1.48508 * 109.46641 * 239.99714 * 17 15 13 21 21 C 1.50705 * 109.47260 * 184.99490 * 3 2 1 22 22 C 1.38203 * 119.99983 * 264.72832 * 21 3 2 23 23 C 1.38430 * 119.99728 * 179.77056 * 22 21 3 24 24 F 1.35097 * 120.00355 * 180.26707 * 23 22 21 25 25 C 1.38480 * 119.99874 * 0.52277 * 23 22 21 26 26 C 1.38165 * 119.99769 * 359.72904 * 25 23 22 27 27 C 1.38427 * 119.99630 * 85.00132 * 21 3 2 28 28 F 1.35105 * 120.00261 * 359.97438 * 27 21 3 29 29 H 1.08997 * 109.47338 * 299.99975 * 1 2 3 30 30 H 1.08996 * 109.46997 * 60.00461 * 1 2 3 31 31 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47741 * 239.99846 * 2 1 3 33 33 H 1.09005 * 109.47114 * 120.00087 * 2 1 3 34 34 H 0.97005 * 120.00261 * 95.00113 * 5 3 2 35 35 H 0.97004 * 120.00018 * 359.97438 * 8 6 5 36 36 H 1.09007 * 109.47081 * 299.99672 * 9 8 6 37 37 H 1.08997 * 109.47795 * 59.99548 * 9 8 6 38 38 H 0.96997 * 120.00370 * 0.02562 * 12 10 9 39 39 H 0.97005 * 119.99583 * 179.97438 * 16 15 13 40 40 H 1.07990 * 120.00417 * 0.02562 * 22 21 3 41 41 H 1.08001 * 119.99902 * 179.70391 * 25 23 22 42 42 H 1.08001 * 119.99493 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4350 2.6643 1.3670 7 8 -0.3413 2.6326 0.4317 8 7 0.0764 3.2620 2.5204 9 6 -1.2470 3.8777 2.6458 10 6 -1.3966 4.4712 4.0229 11 8 -0.4874 4.3876 4.8213 12 7 -2.5407 5.0948 4.3673 13 6 -2.6770 5.6342 5.6203 14 1 -1.8674 5.5598 6.3313 15 6 -3.8567 6.2767 5.9757 16 7 -4.8416 6.3677 5.1104 17 14 -4.0420 7.0123 7.6827 18 1 -2.7991 6.7775 8.4605 19 1 -4.2868 8.4725 7.5685 20 1 -5.1881 6.3710 8.3761 21 6 3.5420 1.4443 -0.1237 22 6 4.3286 1.5205 1.0100 23 6 5.7082 1.5174 0.8967 24 9 6.4773 1.5864 2.0052 25 6 6.3000 1.4488 -0.3534 26 6 5.5135 1.3780 -1.4871 27 6 4.1335 1.3754 -1.3733 28 9 3.3645 1.3060 -2.4819 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2719 2.1231 1.9979 35 1 0.6943 3.2839 3.2679 36 1 -1.3546 4.6632 1.8976 37 1 -2.0160 3.1210 2.4912 38 1 -3.2680 5.1614 3.7290 39 1 -5.6653 6.8159 5.3586 40 1 3.8671 1.5783 1.9846 41 1 7.3764 1.4512 -0.4422 42 1 5.9751 1.3249 -2.4621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358306531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = -131.374026 kcal Electronic energy + Delta-G solvation = -28889.239880 eV Core-core repulsion = 24312.401200 eV Total energy + Delta-G solvation = -4576.838680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33906 -49.33011 -40.49982 -39.27536 -38.23927 -36.16147 -34.41317 -33.71171 -32.26836 -31.69093 -31.35267 -30.47032 -27.75820 -26.32498 -24.46770 -23.52247 -22.79984 -21.40135 -20.55387 -19.60567 -18.87113 -18.15902 -17.85512 -17.68820 -17.32275 -16.31720 -16.21579 -15.80511 -15.71371 -15.59605 -15.02398 -14.86872 -14.69370 -14.63761 -14.36555 -14.21908 -13.90929 -13.67925 -13.42240 -13.35152 -13.05951 -12.88680 -12.24401 -12.19250 -12.00130 -11.90677 -11.64748 -11.59634 -11.22774 -11.14886 -10.93998 -10.41485 -10.33239 -10.02867 -9.68882 -9.65273 -9.21801 -8.96231 -8.66879 -8.63509 -8.10605 -6.52066 -3.93999 0.43545 0.49163 2.65155 2.85728 3.09769 3.22165 3.28849 3.33804 3.62625 3.69645 3.74360 3.96027 4.07340 4.13464 4.31974 4.46118 4.61969 4.86687 4.88575 4.92649 5.09737 5.16781 5.28796 5.32654 5.44648 5.51469 5.53946 5.62633 5.73726 5.89884 5.92461 5.99184 6.07027 6.09183 6.26272 6.40411 6.46638 6.73144 6.99274 7.45739 7.92039 8.16174 8.44470 8.73930 9.04273 9.38990 9.86711 10.64896 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.002157 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.895907 B =12975.908447 C =14059.546317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.207 3.793 4 H 0.108 0.892 5 N -0.745 5.745 6 C 0.707 3.293 7 O -0.587 6.587 8 N -0.724 5.724 9 C 0.129 3.871 10 C 0.428 3.572 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.092 4.092 22 C -0.122 4.122 23 C 0.097 3.903 24 F -0.132 7.132 25 C -0.128 4.128 26 C -0.119 4.119 27 C 0.100 3.900 28 F -0.128 7.128 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -12.196 -13.529 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.101 3.899 4 H 0.126 0.874 5 N -0.404 5.404 6 C 0.407 3.593 7 O -0.466 6.466 8 N -0.381 5.381 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.094 4.094 22 C -0.142 4.142 23 C 0.078 3.922 24 F -0.111 7.111 25 C -0.146 4.146 26 C -0.138 4.138 27 C 0.080 3.920 28 F -0.106 7.106 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.749 -12.151 -13.808 26.265 hybrid contribution 0.011 0.503 1.177 1.280 sum 18.760 -11.648 -12.630 25.439 Atomic orbital electron populations 1.21785 0.93791 1.00643 1.03813 1.21952 0.97894 0.94429 1.02321 1.19589 0.87459 0.94593 0.88268 0.87440 1.45186 1.16625 1.62002 1.16548 1.15744 0.81853 0.78332 0.83376 1.90928 1.51673 1.65026 1.38948 1.44776 1.18453 1.60022 1.14831 1.20789 0.84065 0.98075 0.97003 1.19766 0.84743 0.85226 0.88869 1.90491 1.40971 1.64304 1.52708 1.41795 1.13786 1.48045 1.14788 1.19770 1.01359 1.32040 0.90186 0.87650 1.25330 0.95111 0.97413 0.99921 1.69626 1.05525 1.42990 1.35306 0.85759 0.78534 0.78475 0.81328 1.19148 1.20610 1.20615 1.19889 0.96577 1.01300 0.91606 1.20784 0.91610 1.02133 0.99626 1.17609 0.88581 1.02989 0.83024 1.91548 1.74918 1.93600 1.51006 1.21028 1.01444 1.01929 0.90238 1.21000 0.91270 1.01385 1.00176 1.17389 0.88782 1.03681 0.82137 1.91548 1.75039 1.93501 1.50545 0.91810 0.91884 0.93528 0.91127 0.91584 0.76932 0.75650 0.89967 0.89957 0.77014 0.91638 0.83705 0.83535 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.51 37.16 0.32 -1.40 16 2 C -0.13 -1.26 5.59 -26.73 -0.15 -1.41 16 3 C 0.21 2.17 2.24 -69.08 -0.15 2.02 16 4 H 0.11 1.34 7.22 -51.93 -0.38 0.96 16 5 N -0.75 -8.51 4.95 -59.81 -0.30 -8.81 16 6 C 0.71 10.76 7.13 -86.91 -0.62 10.14 16 7 O -0.59 -10.49 13.48 5.29 0.07 -10.41 16 8 N -0.72 -11.68 5.53 -66.41 -0.37 -12.05 16 9 C 0.13 2.34 6.15 -5.19 -0.03 2.31 16 10 C 0.43 9.69 7.85 -10.98 -0.09 9.61 16 11 O -0.60 -15.09 15.24 5.55 0.08 -15.01 16 12 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 14 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 15 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.81 13.05 55.50 0.72 -23.08 16 17 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 C -0.09 -0.81 5.06 -104.56 -0.53 -1.34 16 22 C -0.12 -0.98 9.22 -39.52 -0.36 -1.34 16 23 C 0.10 0.77 7.30 -39.42 -0.29 0.48 16 24 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 25 C -0.13 -0.79 10.02 -39.52 -0.40 -1.19 16 26 C -0.12 -0.75 10.02 -39.52 -0.40 -1.15 16 27 C 0.10 0.84 7.24 -39.43 -0.29 0.55 16 28 F -0.13 -1.22 16.57 2.25 0.04 -1.18 16 29 H 0.06 0.91 5.64 -51.93 -0.29 0.62 16 30 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.39 3.66 6.21 -40.82 -0.25 3.41 16 35 H 0.41 6.41 7.45 -40.82 -0.30 6.11 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.15 1.00 6.06 -52.49 -0.32 0.68 16 41 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -31.19 364.41 -7.27 -38.45 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -4.74 Total: 16.40 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -3.23 Total: 9.47 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.00 Total: -57.51 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.16 Total: -25.42 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.19 -7.27 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.920 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds