Wall clock time and date at job start Sat Apr 11 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 H 1.09003 * 109.46887 * 55.00327 * 3 2 1 5 5 N 1.46497 * 109.47420 * 295.00376 * 3 2 1 6 6 C 1.34777 * 119.99830 * 152.47190 * 5 3 2 7 7 O 1.21580 * 120.00261 * 0.02562 * 6 5 3 8 8 N 1.34780 * 119.99694 * 180.02562 * 6 5 3 9 9 C 1.46501 * 120.00089 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47339 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99734 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00355 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00526 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00034 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00592 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00542 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99409 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47133 * 90.00045 * 17 15 13 19 19 H 1.48502 * 109.46833 * 209.99916 * 17 15 13 20 20 H 1.48497 * 109.47491 * 329.99745 * 17 15 13 21 21 C 1.50703 * 109.47209 * 175.00251 * 3 2 1 22 22 C 1.38206 * 119.99876 * 96.07924 * 21 3 2 23 23 C 1.38431 * 119.99791 * 180.02562 * 22 21 3 24 24 F 1.35096 * 119.99948 * 179.97438 * 23 22 21 25 25 C 1.38471 * 119.99905 * 359.97438 * 23 22 21 26 26 C 1.38157 * 120.00174 * 0.02562 * 25 23 22 27 27 C 1.38426 * 120.00084 * 276.36366 * 21 3 2 28 28 F 1.35103 * 120.00298 * 0.02562 * 27 21 3 29 29 H 1.08991 * 109.47590 * 59.99775 * 1 2 3 30 30 H 1.09002 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46993 * 299.99296 * 1 2 3 32 32 H 1.09008 * 109.46967 * 240.00521 * 2 1 3 33 33 H 1.09001 * 109.47778 * 120.00199 * 2 1 3 34 34 H 0.97002 * 119.99799 * 332.46912 * 5 3 2 35 35 H 0.97002 * 119.99934 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46939 * 300.00442 * 9 8 6 37 37 H 1.09002 * 109.46783 * 59.99921 * 9 8 6 38 38 H 0.97002 * 119.99545 * 0.02562 * 12 10 9 39 39 H 0.96987 * 120.00043 * 179.97438 * 16 15 13 40 40 H 1.08000 * 119.99888 * 0.02562 * 22 21 3 41 41 H 1.08006 * 119.99767 * 179.97438 * 25 23 22 42 42 H 1.08003 * 119.99987 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 1.4758 3.4332 -1.2867 7 8 1.6388 4.0946 -0.2796 8 7 1.1187 4.0358 -2.4382 9 6 0.9274 5.4878 -2.4765 10 6 0.5348 5.9062 -3.8699 11 8 0.4251 5.0734 -4.7450 12 7 0.3046 7.2056 -4.1437 13 6 -0.0530 7.5862 -5.4113 14 1 -0.1507 6.8447 -6.1904 15 6 -0.2899 8.9260 -5.6937 16 7 -0.6322 9.2909 -6.9088 17 14 -0.1202 10.2086 -4.3462 18 1 1.2747 10.7173 -4.3199 19 1 -1.0524 11.3333 -4.6133 20 1 -0.4480 9.5948 -3.0344 21 6 3.5419 1.4444 0.1238 22 6 4.3284 1.5374 -1.0088 23 6 5.7081 1.5386 -0.8951 24 9 6.4770 1.6290 -2.0023 25 6 6.3000 1.4471 0.3533 26 6 5.5137 1.3541 1.4855 27 6 4.1337 1.3470 1.3714 28 9 3.3649 1.2498 2.4781 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5227 1.5699 -2.0553 35 1 0.9891 3.5082 -3.2418 36 1 0.1403 5.7691 -1.7769 37 1 1.8566 5.9841 -2.1967 38 1 0.3920 7.8716 -3.4439 39 1 -0.7978 10.2260 -7.1058 40 1 3.8667 1.6091 -1.9825 41 1 7.3764 1.4476 0.4420 42 1 5.9753 1.2824 2.4592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358306534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:20 Heat of formation + Delta-G solvation = -130.517281 kcal Electronic energy + Delta-G solvation = -29139.810176 eV Core-core repulsion = 24563.008647 eV Total energy + Delta-G solvation = -4576.801528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.21972 -49.18376 -40.44668 -39.17391 -38.36132 -36.40455 -34.50302 -33.76674 -32.42687 -31.80962 -31.60359 -30.33375 -27.95580 -26.36691 -24.30941 -23.39880 -22.75562 -21.43223 -20.75635 -19.67492 -18.92547 -18.28615 -17.97286 -17.57777 -17.54033 -16.20716 -16.12817 -15.64022 -15.61300 -15.58358 -15.13299 -14.94335 -14.72025 -14.60385 -14.40632 -14.23003 -13.95139 -13.83566 -13.58064 -13.14976 -13.02696 -12.79863 -12.50351 -12.39251 -12.18038 -12.12635 -12.05859 -11.57132 -11.31211 -11.30641 -11.23668 -10.64847 -10.18367 -10.06943 -9.70810 -9.51375 -9.37967 -8.84446 -8.79325 -8.78280 -8.31516 -6.41778 -3.94421 0.59930 0.67512 2.59703 2.99136 3.00285 3.04037 3.12227 3.22540 3.55901 3.80932 3.84885 4.02770 4.12771 4.18029 4.35165 4.49120 4.58795 4.64375 4.71197 4.82375 4.98981 5.13315 5.26477 5.34711 5.37492 5.57899 5.60794 5.63852 5.65452 5.67135 5.70606 5.75883 5.81942 5.83333 5.96052 6.33970 6.43407 6.58355 6.92125 7.43802 7.98820 8.08875 8.43052 8.65248 8.80637 9.28783 9.62216 10.70393 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002478 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.440045 B =11296.619362 C =11945.277119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.206 3.794 4 H 0.109 0.891 5 N -0.741 5.741 6 C 0.706 3.294 7 O -0.591 6.591 8 N -0.723 5.723 9 C 0.126 3.874 10 C 0.438 3.562 11 O -0.580 6.580 12 N -0.576 5.576 13 C -0.310 4.310 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.874 5.874 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.267 1.267 21 C -0.096 4.096 22 C -0.112 4.112 23 C 0.092 3.908 24 F -0.134 7.134 25 C -0.129 4.129 26 C -0.124 4.124 27 C 0.098 3.902 28 F -0.131 7.131 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.375 0.625 39 H 0.276 0.724 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 -18.998 17.726 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.099 3.901 4 H 0.127 0.873 5 N -0.397 5.397 6 C 0.406 3.594 7 O -0.470 6.470 8 N -0.380 5.380 9 C -0.003 4.003 10 C 0.224 3.776 11 O -0.464 6.464 12 N -0.213 5.213 13 C -0.439 4.439 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.513 5.513 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.192 1.192 21 C -0.099 4.099 22 C -0.131 4.131 23 C 0.072 3.928 24 F -0.113 7.113 25 C -0.148 4.148 26 C -0.143 4.143 27 C 0.078 3.922 28 F -0.110 7.110 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.860 -18.716 17.871 27.692 hybrid contribution 0.085 0.839 0.113 0.851 sum 9.945 -17.876 17.984 27.237 Atomic orbital electron populations 1.21761 0.94375 1.01988 1.02784 1.21816 0.97175 0.93866 1.03479 1.19628 0.87977 0.94147 0.88323 0.87321 1.45067 1.75613 1.06261 1.12781 1.15834 0.78040 0.81671 0.83861 1.90920 1.58698 1.63688 1.33655 1.44744 1.73579 1.08269 1.11457 1.20811 1.02381 0.80315 0.96745 1.19642 0.85144 0.83496 0.89302 1.90535 1.57342 1.50675 1.47851 1.42113 1.61307 1.06305 1.11619 1.19435 1.43831 0.94500 0.86096 0.86089 1.25064 0.96967 0.97195 0.96654 1.69612 1.44844 1.17981 1.18887 0.86674 0.79224 0.82095 0.81530 1.19377 1.19979 1.19193 1.20233 0.97574 1.00731 0.91328 1.20836 0.91322 1.00959 0.99936 1.17667 0.88779 1.03303 0.83016 1.91536 1.74979 1.93555 1.51201 1.20986 1.01284 1.02212 0.90350 1.20955 0.91405 1.01915 0.99983 1.17411 0.88741 1.03807 0.82245 1.91516 1.75132 1.93430 1.50909 0.92084 0.92232 0.92296 0.90894 0.90099 0.76613 0.75431 0.89836 0.89895 0.79225 0.91371 0.83821 0.83758 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.80 37.16 0.36 -0.70 16 2 C -0.13 -0.87 5.47 -26.73 -0.15 -1.02 16 3 C 0.21 2.00 1.97 -69.08 -0.14 1.87 16 4 H 0.11 1.29 7.19 -51.93 -0.37 0.92 16 5 N -0.74 -7.74 3.22 -59.81 -0.19 -7.93 16 6 C 0.71 10.38 8.55 -86.91 -0.74 9.64 16 7 O -0.59 -10.74 15.96 5.30 0.08 -10.66 16 8 N -0.72 -11.10 5.53 -66.41 -0.37 -11.47 16 9 C 0.13 2.16 6.15 -5.20 -0.03 2.13 16 10 C 0.44 9.50 7.85 -10.99 -0.09 9.42 16 11 O -0.58 -14.38 15.24 5.54 0.08 -14.29 16 12 N -0.58 -13.30 5.09 -10.97 -0.06 -13.35 16 13 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 14 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 15 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 16 N -0.87 -24.90 13.96 55.50 0.77 -24.13 16 17 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 21 C -0.10 -0.97 5.05 -104.56 -0.53 -1.50 16 22 C -0.11 -1.13 9.30 -39.52 -0.37 -1.50 16 23 C 0.09 0.92 7.30 -39.42 -0.29 0.64 16 24 F -0.13 -1.50 17.27 2.25 0.04 -1.46 16 25 C -0.13 -1.06 10.02 -39.53 -0.40 -1.45 16 26 C -0.12 -0.99 10.02 -39.53 -0.40 -1.39 16 27 C 0.10 0.96 7.24 -39.43 -0.29 0.67 16 28 F -0.13 -1.35 16.59 2.25 0.04 -1.31 16 29 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 3.19 8.63 -40.82 -0.35 2.84 16 35 H 0.41 6.07 7.45 -40.82 -0.30 5.76 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 39 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.14 1.38 7.23 -52.49 -0.38 1.00 16 41 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.23 370.40 -7.00 -40.23 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -4.98 Total: 15.27 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.29 Total: 9.27 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.16 Total: -56.88 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.23 -7.00 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.285 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds