Wall clock time and date at job start Sat Apr 11 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 H 1.09003 * 109.46887 * 55.00327 * 3 2 1 5 5 N 1.46497 * 109.47420 * 295.00376 * 3 2 1 6 6 C 1.34777 * 119.99830 * 152.47190 * 5 3 2 7 7 O 1.21580 * 120.00261 * 0.02562 * 6 5 3 8 8 N 1.34780 * 119.99694 * 180.02562 * 6 5 3 9 9 C 1.46501 * 120.00089 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47339 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99734 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00355 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00526 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00034 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00592 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00542 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99409 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47133 * 90.00045 * 17 15 13 19 19 H 1.48502 * 109.46833 * 209.99916 * 17 15 13 20 20 H 1.48497 * 109.47491 * 329.99745 * 17 15 13 21 21 C 1.50703 * 109.47209 * 175.00251 * 3 2 1 22 22 C 1.38206 * 119.99876 * 96.07924 * 21 3 2 23 23 C 1.38431 * 119.99791 * 180.02562 * 22 21 3 24 24 F 1.35096 * 119.99948 * 179.97438 * 23 22 21 25 25 C 1.38471 * 119.99905 * 359.97438 * 23 22 21 26 26 C 1.38157 * 120.00174 * 0.02562 * 25 23 22 27 27 C 1.38426 * 120.00084 * 276.36366 * 21 3 2 28 28 F 1.35103 * 120.00298 * 0.02562 * 27 21 3 29 29 H 1.08991 * 109.47590 * 59.99775 * 1 2 3 30 30 H 1.09002 * 109.46711 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46993 * 299.99296 * 1 2 3 32 32 H 1.09008 * 109.46967 * 240.00521 * 2 1 3 33 33 H 1.09001 * 109.47778 * 120.00199 * 2 1 3 34 34 H 0.97002 * 119.99799 * 332.46912 * 5 3 2 35 35 H 0.97002 * 119.99934 * 359.97438 * 8 6 5 36 36 H 1.09004 * 109.46939 * 300.00442 * 9 8 6 37 37 H 1.09002 * 109.46783 * 59.99921 * 9 8 6 38 38 H 0.97002 * 119.99545 * 0.02562 * 12 10 9 39 39 H 0.96987 * 120.00043 * 179.97438 * 16 15 13 40 40 H 1.08000 * 119.99888 * 0.02562 * 22 21 3 41 41 H 1.08006 * 119.99767 * 179.97438 * 25 23 22 42 42 H 1.08003 * 119.99987 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 1.4758 3.4332 -1.2867 7 8 1.6388 4.0946 -0.2796 8 7 1.1187 4.0358 -2.4382 9 6 0.9274 5.4878 -2.4765 10 6 0.5348 5.9062 -3.8699 11 8 0.4251 5.0734 -4.7450 12 7 0.3046 7.2056 -4.1437 13 6 -0.0530 7.5862 -5.4113 14 1 -0.1507 6.8447 -6.1904 15 6 -0.2899 8.9260 -5.6937 16 7 -0.6322 9.2909 -6.9088 17 14 -0.1202 10.2086 -4.3462 18 1 1.2747 10.7173 -4.3199 19 1 -1.0524 11.3333 -4.6133 20 1 -0.4480 9.5948 -3.0344 21 6 3.5419 1.4444 0.1238 22 6 4.3284 1.5374 -1.0088 23 6 5.7081 1.5386 -0.8951 24 9 6.4770 1.6290 -2.0023 25 6 6.3000 1.4471 0.3533 26 6 5.5137 1.3541 1.4855 27 6 4.1337 1.3470 1.3714 28 9 3.3649 1.2498 2.4781 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5227 1.5699 -2.0553 35 1 0.9891 3.5082 -3.2418 36 1 0.1403 5.7691 -1.7769 37 1 1.8566 5.9841 -2.1967 38 1 0.3920 7.8716 -3.4439 39 1 -0.7978 10.2260 -7.1058 40 1 3.8667 1.6091 -1.9825 41 1 7.3764 1.4476 0.4420 42 1 5.9753 1.2824 2.4592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358306534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:20 Heat of formation + Delta-G solvation = -153.625585 kcal Electronic energy + Delta-G solvation = -29140.812227 eV Core-core repulsion = 24563.008647 eV Total energy + Delta-G solvation = -4577.803580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98120 -49.97163 -41.51778 -40.43352 -39.71968 -37.27473 -36.25808 -35.30205 -33.84800 -33.26134 -32.32669 -31.03947 -29.38812 -27.29331 -26.05356 -24.12084 -23.43998 -22.36240 -21.73858 -21.45778 -20.60649 -19.62177 -18.82834 -18.37944 -18.30701 -17.47168 -17.23014 -16.91478 -16.84491 -16.71864 -16.38575 -15.93836 -15.89767 -15.48669 -15.42681 -15.36178 -15.00212 -14.88631 -14.69688 -14.30716 -14.21812 -14.00304 -13.79615 -13.66552 -13.54837 -13.01749 -12.95211 -12.73947 -12.44625 -12.21001 -12.00462 -11.99833 -11.92598 -11.58057 -11.42157 -10.65221 -10.51626 -10.32558 -10.17261 -9.94069 -9.57450 -8.45636 -6.07474 -0.12885 -0.01126 1.31044 1.34076 1.43214 1.51613 1.78892 2.07348 2.20355 2.29813 2.77377 3.08552 3.10819 3.13604 3.26556 3.42871 3.65234 3.83356 3.98188 4.01334 4.04257 4.18430 4.36187 4.41454 4.43981 4.54821 4.70948 4.81086 4.91886 4.94822 4.97408 5.01762 5.07579 5.11212 5.27638 5.39254 5.46661 5.49550 5.73438 5.88108 5.90513 6.48792 6.78249 6.98248 7.28611 7.49550 7.78150 8.70832 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002478 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.440045 B =11296.619362 C =11945.277119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.207 3.793 4 H 0.087 0.913 5 N -0.724 5.724 6 C 0.709 3.291 7 O -0.624 6.624 8 N -0.725 5.725 9 C 0.139 3.861 10 C 0.446 3.554 11 O -0.613 6.613 12 N -0.578 5.578 13 C -0.330 4.330 14 H 0.064 0.936 15 C -0.008 4.008 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.232 1.232 21 C -0.106 4.106 22 C -0.122 4.122 23 C 0.075 3.925 24 F -0.144 7.144 25 C -0.122 4.122 26 C -0.116 4.116 27 C 0.085 3.915 28 F -0.137 7.137 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.413 0.587 35 H 0.411 0.589 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.143 0.857 41 H 0.171 0.829 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -19.291 20.610 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.101 3.899 4 H 0.105 0.895 5 N -0.380 5.380 6 C 0.408 3.592 7 O -0.505 6.505 8 N -0.382 5.382 9 C 0.010 3.990 10 C 0.234 3.766 11 O -0.499 6.499 12 N -0.218 5.218 13 C -0.459 4.459 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.566 5.566 17 Si 0.778 3.222 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.156 1.156 21 C -0.108 4.108 22 C -0.141 4.141 23 C 0.055 3.945 24 F -0.123 7.123 25 C -0.140 4.140 26 C -0.135 4.135 27 C 0.065 3.935 28 F -0.115 7.115 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.188 0.812 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.029 -19.071 20.762 30.272 hybrid contribution -0.247 0.771 -0.822 1.154 sum 10.782 -18.300 19.940 29.133 Atomic orbital electron populations 1.21757 0.94376 1.02713 1.01970 1.21791 0.97008 0.92025 1.04633 1.19697 0.88085 0.95273 0.86880 0.89516 1.44938 1.74284 1.04897 1.13835 1.15882 0.77677 0.82658 0.82937 1.90898 1.60224 1.64788 1.34616 1.44689 1.74008 1.07652 1.11900 1.20678 1.03590 0.81524 0.93206 1.20488 0.82716 0.82654 0.90758 1.90524 1.58017 1.51648 1.49717 1.41921 1.62061 1.07307 1.10531 1.19026 1.45859 0.94102 0.86952 0.91787 1.26050 0.95681 0.99393 0.99631 1.69773 1.46097 1.18976 1.21753 0.85460 0.79654 0.78160 0.78955 1.18151 1.19839 1.15584 1.20240 0.97506 1.01442 0.91650 1.20870 0.91656 1.01562 0.99973 1.17920 0.88829 1.04220 0.83505 1.91509 1.75158 1.93758 1.51852 1.21284 1.02662 1.00683 0.89414 1.21271 0.90592 1.00369 1.01231 1.17649 0.89574 1.04345 0.81958 1.91503 1.75417 1.93532 1.51068 0.92794 0.90755 0.93201 0.89337 0.89273 0.75031 0.75167 0.88074 0.88248 0.77254 0.90927 0.83877 0.81189 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.80 71.98 0.71 -1.21 16 2 C -0.12 -1.43 5.47 30.59 0.17 -1.27 16 3 C 0.21 3.83 1.97 44.25 0.09 3.92 16 4 H 0.09 2.04 7.19 -2.39 -0.02 2.02 16 5 N -0.72 -14.39 3.22 -461.42 -1.48 -15.88 16 6 C 0.71 20.07 8.55 179.05 1.53 21.60 16 7 O -0.62 -22.01 15.96 -3.97 -0.06 -22.07 16 8 N -0.72 -21.45 5.53 -482.30 -2.67 -24.12 16 9 C 0.14 4.51 6.15 85.63 0.53 5.04 16 10 C 0.45 19.22 7.85 87.66 0.69 19.91 16 11 O -0.61 -31.05 15.24 -3.08 -0.05 -31.10 16 12 N -0.58 -26.43 5.09 -306.99 -1.56 -28.00 16 13 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 14 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 15 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 16 N -0.93 -54.36 13.96 21.66 0.30 -54.06 16 17 Si 0.96 38.11 27.74 68.60 1.90 40.01 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 21 C -0.11 -2.02 5.05 -19.83 -0.10 -2.12 16 22 C -0.12 -2.35 9.30 22.31 0.21 -2.14 16 23 C 0.07 1.41 7.30 22.37 0.16 1.57 16 24 F -0.14 -3.09 17.27 44.97 0.78 -2.31 16 25 C -0.12 -1.70 10.02 22.31 0.22 -1.47 16 26 C -0.12 -1.57 10.02 22.31 0.22 -1.34 16 27 C 0.08 1.53 7.24 22.37 0.16 1.69 16 28 F -0.14 -2.64 16.59 44.97 0.75 -1.89 16 29 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.41 6.09 8.63 -92.71 -0.80 5.29 16 35 H 0.41 11.94 7.45 -92.71 -0.69 11.25 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 39 H 0.28 15.08 8.31 -92.72 -0.77 14.31 16 40 H 0.14 2.65 7.23 -2.91 -0.02 2.63 16 41 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -75.35 370.40 2.83 -72.52 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.97 Total: 40.51 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 5.91 Total: 26.40 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.41 Total: -122.06 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.11 Total: -53.17 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.52 Total: -4.21 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Total: -75.35 2.83 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.106 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds