Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.38257 * 119.55330 * 95.00335 * 16 15 14 18 18 C 1.38540 * 119.21768 * 179.97438 * 17 16 15 19 19 C 1.39145 * 118.37199 * 359.97438 * 18 17 16 20 20 O 1.35909 * 120.46976 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00205 * 180.02562 * 20 19 18 22 22 F 1.39906 * 109.46770 * 300.00169 * 21 20 19 23 23 F 1.39891 * 109.47015 * 59.99952 * 21 20 19 24 24 C 1.38706 * 119.05410 * 0.02562 * 19 18 17 25 25 N 1.31840 * 120.68258 * 359.73955 * 24 19 18 26 26 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 27 27 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 28 28 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 29 29 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 30 30 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 31 31 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 32 32 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 33 33 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 34 34 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 35 35 H 1.07994 * 120.39348 * 359.95417 * 17 16 15 36 36 H 1.07997 * 120.81308 * 180.02562 * 18 17 16 37 37 H 1.08996 * 109.47507 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65387 * 179.97438 * 24 19 18 39 39 H 1.09003 * 117.50034 * 359.97438 * 26 9 7 40 40 H 1.09002 * 117.49971 * 145.02730 * 26 9 7 41 41 H 1.08996 * 117.49810 * 214.97781 * 27 9 7 42 42 H 1.08995 * 117.50078 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.1775 -3.8161 6.8146 18 6 6.4647 -4.0135 7.2873 19 6 7.1169 -5.1969 6.9550 20 8 8.3801 -5.4350 7.3963 21 6 8.9795 -6.6735 7.0105 22 9 8.2066 -7.7355 7.4922 23 9 9.0494 -6.7430 5.6150 24 6 6.4594 -6.1301 6.1671 25 7 5.2321 -5.9056 5.7411 26 6 1.5730 -3.5803 -0.9273 27 6 0.2453 -2.8218 -0.9979 28 1 -0.4850 0.8369 -0.0732 29 1 0.3749 -2.1616 2.0428 30 1 0.3013 -3.8500 1.4840 31 1 3.0162 -3.0718 1.8342 32 1 4.1035 -3.8536 3.7463 33 1 2.6567 -3.8961 6.1715 34 1 2.6637 -5.5419 5.4936 35 1 4.6411 -2.9095 7.0528 36 1 6.9497 -3.2676 7.8995 37 1 9.9841 -6.7368 7.4285 38 1 6.9566 -7.0517 5.9030 39 1 2.3246 -3.3504 -1.6826 40 1 1.5428 -4.6177 -0.5940 41 1 -0.6578 -3.3605 -0.7110 42 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430938257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -111.138611 kcal Electronic energy + Delta-G solvation = -28548.719242 eV Core-core repulsion = 23972.758036 eV Total energy + Delta-G solvation = -4575.961206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.92552 -47.91422 -41.08214 -39.41622 -38.64047 -36.73999 -34.59664 -33.22787 -32.85212 -31.94191 -31.17109 -27.57330 -26.52426 -25.70475 -24.76731 -23.98421 -22.34973 -21.13709 -20.29360 -19.70162 -19.35763 -19.02850 -18.49190 -17.94103 -16.79082 -16.71232 -16.12732 -15.92429 -15.61240 -15.26013 -14.98677 -14.63226 -14.58401 -14.29640 -14.24650 -14.03694 -13.88010 -13.80039 -13.48508 -13.46097 -13.10598 -12.85914 -12.71967 -12.55985 -12.03464 -11.70995 -11.53001 -10.95754 -10.94013 -10.53405 -10.24144 -10.20142 -9.92075 -9.76849 -9.45908 -9.06249 -9.01354 -8.86195 -8.45875 -8.20788 -7.95788 -6.05156 -4.14863 0.53308 0.77467 1.89581 2.87830 3.00831 3.27431 3.33510 3.34471 3.53739 3.67931 3.79677 3.91311 4.03596 4.11977 4.29385 4.36253 4.48833 4.80068 4.88338 5.07158 5.22623 5.28853 5.39634 5.45343 5.69090 5.76592 5.87261 6.07269 6.31530 6.38940 6.51729 6.63281 6.70797 6.75161 6.88235 7.15726 7.34180 7.44891 7.47298 7.52658 7.64049 7.83031 8.36944 8.66516 8.86144 9.20625 9.51871 11.02021 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002150 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.984555 B =13017.220093 C =13402.899988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.603 6.603 14 N -0.748 5.748 15 C 0.197 3.803 16 C 0.090 3.910 17 C -0.116 4.116 18 C -0.090 4.090 19 C 0.053 3.947 20 O -0.315 6.315 21 C 0.410 3.590 22 F -0.197 7.197 23 F -0.195 7.195 24 C 0.041 3.959 25 N -0.431 5.431 26 C -0.211 4.211 27 C -0.142 4.142 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.397 0.603 32 H 0.394 0.606 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.900 -10.985 16.305 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.400 3.600 13 O -0.482 6.482 14 N -0.406 5.406 15 C 0.072 3.928 16 C -0.048 4.048 17 C -0.136 4.136 18 C -0.116 4.116 19 C 0.007 3.993 20 O -0.232 6.232 21 C 0.320 3.680 22 F -0.178 7.178 23 F -0.177 7.177 24 C -0.118 4.118 25 N -0.141 5.141 26 C -0.248 4.248 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.230 0.770 32 H 0.228 0.772 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.202 0.798 38 H 0.180 0.820 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.368 -11.582 16.417 26.558 hybrid contribution 1.716 1.447 -0.077 2.246 sum 19.083 -10.135 16.340 27.090 Atomic orbital electron populations 1.69979 1.05852 1.26938 1.48273 1.24984 0.94819 0.98907 0.94372 0.86691 0.79640 0.83254 0.78559 1.20348 1.21294 1.20205 1.20306 0.92546 0.88638 1.52239 0.92341 1.19043 0.99368 0.93241 0.85992 1.20861 0.83228 0.97741 0.92321 1.45146 1.11313 1.66644 1.14074 1.15973 0.83648 0.78728 0.81610 1.90875 1.27740 1.60667 1.68941 1.44980 1.07966 1.70955 1.16676 1.19787 0.89524 1.00275 0.83258 1.21357 0.96988 0.90007 0.96454 1.22005 0.94302 1.00379 0.96899 1.20975 0.94466 0.95363 1.00802 1.20010 0.84605 0.96878 0.97774 1.86632 1.27666 1.37674 1.71205 1.23471 0.94030 0.74509 0.76021 1.93124 1.78616 1.58379 1.87723 1.93129 1.96775 1.95597 1.32201 1.23260 0.92268 0.99357 0.96916 1.67470 1.07159 1.20677 1.18782 1.23015 1.00658 0.95659 1.05487 1.22466 0.90822 1.01308 1.03400 0.92827 0.91683 0.94338 0.76980 0.77238 0.89922 0.89922 0.83043 0.83287 0.79756 0.82043 0.90480 0.91686 0.91780 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 12.65 55.43 0.70 -23.60 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.89 8.59 -34.44 -0.30 -13.18 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 10 C 0.18 4.20 5.50 -4.05 -0.02 4.18 16 11 N -0.72 -14.29 5.48 -65.23 -0.36 -14.65 16 12 C 0.70 13.55 8.57 -86.91 -0.74 12.81 16 13 O -0.60 -13.86 16.34 5.29 0.09 -13.77 16 14 N -0.75 -11.04 5.55 -66.41 -0.37 -11.40 16 15 C 0.20 2.54 5.98 -5.20 -0.03 2.50 16 16 C 0.09 1.01 6.15 -82.58 -0.51 0.51 16 17 C -0.12 -1.02 9.71 -39.46 -0.38 -1.41 16 18 C -0.09 -0.73 10.13 -39.13 -0.40 -1.13 16 19 C 0.05 0.49 6.50 -39.07 -0.25 0.23 16 20 O -0.32 -2.28 10.44 -19.45 -0.20 -2.48 16 21 C 0.41 1.98 5.98 101.05 0.60 2.58 16 22 F -0.20 -1.32 15.60 2.25 0.04 -1.29 16 23 F -0.20 -1.38 15.61 2.25 0.04 -1.34 16 24 C 0.04 0.44 9.45 -17.38 -0.16 0.27 16 25 N -0.43 -5.34 10.27 -9.35 -0.10 -5.43 16 26 C -0.21 -4.48 9.96 -26.69 -0.27 -4.74 16 27 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 28 H 0.26 7.01 8.32 -40.82 -0.34 6.68 16 29 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 31 H 0.40 7.22 8.34 -40.82 -0.34 6.88 16 32 H 0.39 5.09 8.48 -40.82 -0.35 4.74 16 33 H 0.08 1.01 8.04 -51.92 -0.42 0.59 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.19 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.16 1.59 5.12 -52.49 -0.27 1.32 16 39 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -32.84 372.69 -7.75 -40.59 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.14 Total: 10.94 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.03 Total: 1.29 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.12 Total: -55.09 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.12 Total: -16.25 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.07 Total: -2.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.84 -7.75 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430938257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.553 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds