Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.38257 * 119.55330 * 95.00335 * 16 15 14 18 18 C 1.38540 * 119.21768 * 179.97438 * 17 16 15 19 19 C 1.39145 * 118.37199 * 359.97438 * 18 17 16 20 20 O 1.35909 * 120.46976 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00205 * 180.02562 * 20 19 18 22 22 F 1.39906 * 109.46770 * 300.00169 * 21 20 19 23 23 F 1.39891 * 109.47015 * 59.99952 * 21 20 19 24 24 C 1.38706 * 119.05410 * 0.02562 * 19 18 17 25 25 N 1.31840 * 120.68258 * 359.73955 * 24 19 18 26 26 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 27 27 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 28 28 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 29 29 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 30 30 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 31 31 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 32 32 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 33 33 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 34 34 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 35 35 H 1.07994 * 120.39348 * 359.95417 * 17 16 15 36 36 H 1.07997 * 120.81308 * 180.02562 * 18 17 16 37 37 H 1.08996 * 109.47507 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65387 * 179.97438 * 24 19 18 39 39 H 1.09003 * 117.50034 * 359.97438 * 26 9 7 40 40 H 1.09002 * 117.49971 * 145.02730 * 26 9 7 41 41 H 1.08996 * 117.49810 * 214.97781 * 27 9 7 42 42 H 1.08995 * 117.50078 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.1775 -3.8161 6.8146 18 6 6.4647 -4.0135 7.2873 19 6 7.1169 -5.1969 6.9550 20 8 8.3801 -5.4350 7.3963 21 6 8.9795 -6.6735 7.0105 22 9 8.2066 -7.7355 7.4922 23 9 9.0494 -6.7430 5.6150 24 6 6.4594 -6.1301 6.1671 25 7 5.2321 -5.9056 5.7411 26 6 1.5730 -3.5803 -0.9273 27 6 0.2453 -2.8218 -0.9979 28 1 -0.4850 0.8369 -0.0732 29 1 0.3749 -2.1616 2.0428 30 1 0.3013 -3.8500 1.4840 31 1 3.0162 -3.0718 1.8342 32 1 4.1035 -3.8536 3.7463 33 1 2.6567 -3.8961 6.1715 34 1 2.6637 -5.5419 5.4936 35 1 4.6411 -2.9095 7.0528 36 1 6.9497 -3.2676 7.8995 37 1 9.9841 -6.7368 7.4285 38 1 6.9566 -7.0517 5.9030 39 1 2.3246 -3.3504 -1.6826 40 1 1.5428 -4.6177 -0.5940 41 1 -0.6578 -3.3605 -0.7110 42 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430938257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -134.442337 kcal Electronic energy + Delta-G solvation = -28549.729768 eV Core-core repulsion = 23972.758036 eV Total energy + Delta-G solvation = -4576.971731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.37147 -48.37543 -41.82638 -40.87545 -39.35755 -38.52207 -35.85833 -34.93075 -33.93153 -33.56585 -32.11520 -28.67287 -27.70955 -27.10146 -26.24718 -24.66901 -23.19645 -22.90851 -21.81775 -21.22149 -20.25430 -19.54543 -19.40106 -18.94571 -18.24184 -17.41891 -17.38141 -16.84780 -16.72185 -16.63164 -16.30891 -16.04332 -15.69753 -15.33038 -15.11831 -15.02634 -14.83941 -14.70751 -14.51376 -14.39658 -14.06807 -14.04064 -13.95253 -13.56937 -13.47416 -13.32871 -12.90825 -12.77628 -12.70929 -12.36985 -12.00704 -11.48492 -11.28257 -10.93863 -10.92035 -10.68282 -10.42649 -10.30385 -10.03723 -9.81372 -9.60181 -8.06492 -6.20991 -0.22093 0.07062 1.44245 1.45244 1.46511 1.53082 1.79970 2.23914 2.44431 2.50180 2.58357 3.05963 3.21126 3.33393 3.38516 3.49148 3.63025 3.63193 3.65865 3.83066 4.13329 4.26628 4.38112 4.48491 4.58071 4.62222 4.68692 4.74414 4.77010 4.94871 5.00943 5.04784 5.17702 5.30885 5.43781 5.57964 5.64044 5.66636 5.73923 5.80717 6.10484 6.39396 6.74634 6.85978 7.19989 7.48436 7.66421 9.00350 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002150 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.984555 B =13017.220093 C =13402.899988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.199 3.801 11 N -0.715 5.715 12 C 0.700 3.300 13 O -0.641 6.641 14 N -0.729 5.729 15 C 0.199 3.801 16 C 0.074 3.926 17 C -0.106 4.106 18 C -0.087 4.087 19 C 0.056 3.944 20 O -0.315 6.315 21 C 0.402 3.598 22 F -0.209 7.209 23 F -0.210 7.210 24 C 0.024 3.976 25 N -0.460 5.460 26 C -0.179 4.179 27 C -0.152 4.152 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.406 0.594 32 H 0.406 0.594 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.242 0.758 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.795 -10.736 17.387 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.004 3.996 10 C 0.074 3.926 11 N -0.369 5.369 12 C 0.400 3.600 13 O -0.524 6.524 14 N -0.386 5.386 15 C 0.074 3.926 16 C -0.064 4.064 17 C -0.126 4.126 18 C -0.113 4.113 19 C 0.010 3.990 20 O -0.231 6.231 21 C 0.314 3.686 22 F -0.191 7.191 23 F -0.192 7.192 24 C -0.135 4.135 25 N -0.170 5.170 26 C -0.216 4.216 27 C -0.191 4.191 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.241 0.759 32 H 0.241 0.759 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.192 0.808 36 H 0.197 0.803 37 H 0.258 0.742 38 H 0.179 0.821 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.339 -11.353 17.506 29.138 hybrid contribution 0.901 1.287 -0.360 1.612 sum 21.240 -10.066 17.146 29.094 Atomic orbital electron populations 1.70109 1.07244 1.27373 1.49744 1.25713 0.95499 1.02085 0.94385 0.85726 0.78354 0.79363 0.78823 1.19582 1.21762 1.19571 1.20623 0.92904 0.89533 1.51216 0.91882 1.19069 1.00162 0.93887 0.86517 1.20425 0.84121 0.96110 0.91930 1.44922 1.10688 1.66884 1.14359 1.16083 0.84175 0.78405 0.81356 1.90848 1.29609 1.62220 1.69719 1.44833 1.07054 1.69571 1.17120 1.19823 0.91086 0.99492 0.82181 1.21108 0.96270 0.90877 0.98103 1.22211 0.94612 1.00273 0.95532 1.21339 0.94051 0.95499 1.00361 1.20134 0.85337 0.96742 0.96777 1.86654 1.26525 1.38934 1.70950 1.24454 0.95563 0.73211 0.75403 1.93098 1.79277 1.58977 1.87777 1.93100 1.96800 1.95577 1.33682 1.23306 0.92076 1.00112 0.97969 1.67338 1.08161 1.21585 1.19961 1.22991 0.98987 0.95905 1.03744 1.22393 0.92071 1.01751 1.02853 0.93196 0.95556 0.94695 0.75866 0.75881 0.89047 0.91571 0.80836 0.80303 0.74245 0.82066 0.89731 0.89633 0.91244 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.31 12.65 21.45 0.27 -51.04 16 2 C 0.02 1.27 5.43 84.65 0.46 1.73 16 3 Si 0.95 42.02 29.54 68.60 2.03 44.04 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.51 -25.83 8.59 25.60 0.22 -25.61 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.21 1.47 -52.93 -0.08 0.13 16 10 C 0.20 9.30 5.50 86.38 0.48 9.78 16 11 N -0.72 -28.21 5.48 -478.55 -2.62 -30.83 16 12 C 0.70 27.01 8.57 179.05 1.53 28.54 16 13 O -0.64 -29.93 16.34 -3.97 -0.06 -29.99 16 14 N -0.73 -20.99 5.55 -482.29 -2.68 -23.67 16 15 C 0.20 5.04 5.98 85.63 0.51 5.55 16 16 C 0.07 1.60 6.15 42.56 0.26 1.86 16 17 C -0.11 -1.64 9.71 22.35 0.22 -1.42 16 18 C -0.09 -1.17 10.13 22.56 0.23 -0.94 16 19 C 0.06 0.92 6.50 22.60 0.15 1.07 16 20 O -0.31 -3.73 10.44 -92.52 -0.97 -4.70 16 21 C 0.40 2.95 5.98 113.37 0.68 3.63 16 22 F -0.21 -2.53 15.60 44.97 0.70 -1.83 16 23 F -0.21 -2.66 15.61 44.97 0.70 -1.95 16 24 C 0.02 0.50 9.45 84.80 0.80 1.30 16 25 N -0.46 -11.23 10.27 -183.49 -1.88 -13.11 16 26 C -0.18 -7.33 9.96 30.62 0.30 -7.02 16 27 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 28 H 0.26 14.16 8.32 -92.71 -0.77 13.38 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 1.63 8.09 -2.38 -0.02 1.61 16 31 H 0.41 14.36 8.34 -92.71 -0.77 13.58 16 32 H 0.41 9.96 8.48 -92.71 -0.79 9.17 16 33 H 0.09 2.16 8.04 -2.38 -0.02 2.14 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.24 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.16 3.15 5.12 -2.91 -0.01 3.14 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -72.11 372.69 1.06 -71.06 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.47 Total: 30.23 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 6.04 Total: 11.79 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -6.91 Total: -118.65 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.03 Total: -34.69 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.40 Total: -3.79 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -72.11 1.06 -71.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430938257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.385 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds