Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47340 * 2 1 4 4 C 1.50701 * 109.46962 * 239.99838 * 2 1 3 5 5 H 1.07995 * 120.00456 * 240.00203 * 4 2 1 6 6 C 1.37877 * 119.99533 * 60.00177 * 4 2 1 7 7 N 1.31514 * 120.00511 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47127 * 59.99823 * 8 6 4 10 10 H 1.48500 * 109.47270 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47051 * 300.00081 * 8 6 4 12 12 C 1.53004 * 109.47417 * 120.00333 * 2 1 3 13 13 N 1.46494 * 109.46834 * 299.99961 * 12 2 1 14 14 C 1.34780 * 120.00018 * 179.97438 * 13 12 2 15 15 O 1.21585 * 119.99983 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00049 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00000 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47465 * 180.02562 * 17 16 14 19 19 O 1.42903 * 109.46726 * 65.00068 * 18 17 16 20 20 C 1.35698 * 116.99730 * 180.02562 * 19 18 17 21 21 C 1.38909 * 119.66986 * 179.72823 * 20 19 18 22 22 C 1.38380 * 119.12449 * 179.79200 * 21 20 19 23 23 C 1.38922 * 118.47248 * 0.47699 * 22 21 20 24 24 Cl 1.73604 * 120.36627 * 179.77280 * 23 22 21 25 25 C 1.38146 * 119.26547 * 359.74036 * 23 22 21 26 26 N 1.31967 * 120.81663 * 0.03080 * 25 23 22 27 27 H 1.09009 * 109.46877 * 299.99731 * 1 2 3 28 28 H 1.08996 * 109.47342 * 59.99308 * 1 2 3 29 29 H 1.09001 * 109.47640 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46740 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.46970 * 300.00049 * 3 2 1 32 32 H 1.09002 * 109.47055 * 60.00630 * 3 2 1 33 33 H 0.96994 * 120.00489 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47198 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.46680 * 59.99211 * 12 2 1 36 36 H 0.97003 * 120.00516 * 359.97438 * 13 12 2 37 37 H 0.96999 * 120.00357 * 0.02562 * 16 14 13 38 38 H 1.09002 * 109.47131 * 60.00453 * 17 16 14 39 39 H 1.09002 * 109.47421 * 300.00408 * 17 16 14 40 40 H 1.09002 * 109.47398 * 185.00312 * 18 17 16 41 41 H 1.09001 * 109.47194 * 305.00492 * 18 17 16 42 42 H 1.08000 * 120.44114 * 0.02562 * 21 20 19 43 43 H 1.08000 * 120.76600 * 180.22144 * 22 21 20 44 44 H 1.08001 * 119.59108 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1203 -4.0080 9 1 1.8255 -2.5202 -4.0078 10 1 1.8267 -0.4197 -5.2205 11 1 3.8061 -1.1209 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4453 14 6 1.8770 -0.4916 3.6695 15 8 2.5752 -1.4806 3.7810 16 7 1.4281 0.1440 4.7699 17 6 1.7812 -0.3571 6.1005 18 6 1.1482 0.5384 7.1674 19 8 -0.2752 0.4374 7.0907 20 6 -0.9936 1.1751 7.9745 21 6 -2.3814 1.1231 7.9455 22 6 -3.1027 1.8767 8.8547 23 6 -2.4062 2.6679 9.7596 24 17 -3.2618 3.6374 10.9179 25 6 -1.0251 2.6740 9.7279 26 7 -0.3657 1.9404 8.8513 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 0.7094 1.1619 -3.4843 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7581 2.3565 37 1 0.8708 0.9329 4.6810 38 1 2.8650 -0.3496 6.2158 39 1 1.4106 -1.3758 6.2152 40 1 1.4825 0.2194 8.1546 41 1 1.4486 1.5725 6.9986 42 1 -2.8907 0.5000 7.2253 43 1 -4.1825 1.8535 8.8581 44 1 -0.4783 3.2868 10.4293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458542086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -43.081115 kcal Electronic energy + Delta-G solvation = -26297.678869 eV Core-core repulsion = 22276.465538 eV Total energy + Delta-G solvation = -4021.213331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15747 -39.63229 -38.57021 -36.98491 -36.48479 -34.63979 -33.23542 -33.07641 -31.25889 -30.66635 -29.18406 -25.70016 -25.59154 -25.02018 -24.40182 -23.70411 -22.41831 -20.65992 -19.06552 -18.75680 -18.23603 -17.50437 -17.03415 -16.70212 -15.80315 -15.71328 -15.40312 -15.06724 -14.73795 -14.43878 -14.35308 -13.93933 -13.72443 -13.58208 -13.28039 -13.04512 -12.83810 -12.58527 -12.41362 -12.15787 -11.89538 -11.74474 -11.36394 -11.27146 -11.17004 -10.82691 -10.71123 -10.45942 -10.35924 -10.22958 -10.19349 -9.78884 -9.60520 -9.28763 -9.00767 -8.90365 -8.77589 -8.39220 -8.17156 -6.00030 -4.09912 0.46996 0.58219 1.55220 2.52029 3.07290 3.11887 3.31658 3.35736 3.39927 3.65219 3.70783 4.18191 4.36857 4.40061 4.40956 4.60109 4.70352 4.87349 5.03235 5.09095 5.17892 5.26583 5.37137 5.46424 5.65110 5.74735 6.23175 6.39183 6.52533 6.58105 6.72088 6.82206 6.85367 6.93043 7.05672 7.12108 7.19780 7.31310 7.43180 7.58303 7.71804 8.03474 8.14705 8.40301 8.49433 8.89673 9.05344 9.55600 11.01353 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.001731 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.806210 B =16173.850273 C =17022.765132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.732 5.732 14 C 0.698 3.302 15 O -0.601 6.601 16 N -0.753 5.753 17 C 0.142 3.858 18 C 0.059 3.941 19 O -0.295 6.295 20 C 0.331 3.669 21 C -0.176 4.176 22 C -0.030 4.030 23 C -0.132 4.132 24 Cl -0.056 7.056 25 C 0.157 3.843 26 N -0.527 5.527 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.394 0.606 37 H 0.395 0.605 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 6.301 26.195 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.480 6.480 16 N -0.411 5.411 17 C 0.018 3.982 18 C -0.017 4.017 19 O -0.202 6.202 20 C 0.152 3.848 21 C -0.197 4.197 22 C -0.056 4.056 23 C -0.162 4.162 24 Cl -0.027 7.027 25 C 0.000 4.000 26 N -0.251 5.251 27 H 0.024 0.976 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.229 0.771 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.759 5.375 25.974 27.372 hybrid contribution -1.031 0.476 -0.668 1.317 sum -7.789 5.852 25.305 27.116 Atomic orbital electron populations 1.21816 0.97769 0.99153 0.99975 1.18370 0.92817 0.92787 0.90578 1.21815 0.98566 0.98361 0.99974 1.20945 1.31453 1.12080 0.89858 0.92458 1.24882 0.94893 0.94946 0.98836 1.69792 1.36701 1.22736 1.23287 0.86629 0.79228 0.79790 0.82171 1.20287 1.21371 1.20294 1.21579 0.97858 0.95420 0.82384 1.45502 1.55564 1.33011 1.04592 1.16044 0.80509 0.82939 0.80686 1.90884 1.43295 1.27682 1.86129 1.45055 1.57785 1.33551 1.04674 1.21205 0.99571 0.97698 0.79760 1.23066 0.76909 1.01494 1.00219 1.86351 1.20988 1.61378 1.51437 1.19956 0.89239 0.88261 0.87367 1.21151 0.91233 1.04369 1.02951 1.21374 1.01259 0.91790 0.91184 1.21831 0.93923 1.02057 0.98373 1.98385 1.76915 1.69624 1.57820 1.22402 0.89438 0.93919 0.94200 1.67519 1.40386 1.10229 1.06968 0.97561 0.89670 0.95455 0.95460 0.89665 0.97574 0.92986 0.92962 0.92961 0.77190 0.77108 0.89323 0.90659 0.89655 0.90483 0.82869 0.83010 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 N -0.73 -13.31 4.96 -65.23 -0.32 -13.64 16 14 C 0.70 12.49 8.57 -86.92 -0.74 11.74 16 15 O -0.60 -13.07 16.34 5.29 0.09 -12.98 16 16 N -0.75 -9.83 5.51 -65.22 -0.36 -10.19 16 17 C 0.14 1.53 6.06 -4.04 -0.02 1.51 16 18 C 0.06 0.50 5.44 37.16 0.20 0.70 16 19 O -0.30 -2.89 10.06 -18.80 -0.19 -3.08 16 20 C 0.33 3.02 7.49 -17.13 -0.13 2.90 16 21 C -0.18 -1.30 10.04 -39.28 -0.39 -1.70 16 22 C -0.03 -0.19 9.97 -39.28 -0.39 -0.58 16 23 C -0.13 -0.89 6.34 -39.36 -0.25 -1.14 16 24 Cl -0.06 -0.35 28.99 -51.86 -1.50 -1.85 16 25 C 0.16 1.13 10.97 -17.53 -0.19 0.93 16 26 N -0.53 -4.69 9.21 -13.30 -0.12 -4.81 16 27 H 0.01 0.11 6.86 -51.92 -0.36 -0.25 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.39 6.43 6.18 -40.82 -0.25 6.18 16 37 H 0.40 4.35 8.49 -40.82 -0.35 4.01 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -30.58 380.31 -9.10 -39.68 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.13 Total: 6.85 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.79 Total: 1.64 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.29 Total: -51.76 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.10 Total: -16.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.58 -9.10 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458542086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.406 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds