Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38808 * 125.85606 * 2 1 4 4 C 1.46257 * 126.54565 * 359.96697 * 3 2 1 5 5 C 1.37973 * 119.99702 * 223.20918 * 4 3 2 6 6 C 1.43207 * 119.99380 * 189.51506 * 5 4 3 7 7 N 5.98729 * 94.54891 * 354.59317 * 2 1 3 8 8 C 1.46995 * 120.00613 * 9.51072 * 5 4 3 9 9 O 1.21669 * 119.99526 * 6.03349 * 8 5 4 10 10 N 1.34774 * 120.00145 * 186.03491 * 8 5 4 11 11 C 1.46498 * 120.00050 * 179.97438 * 10 8 5 12 12 C 1.50694 * 109.47206 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00250 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.37090 * 120.00234 * 180.02562 * 14 12 11 16 16 H 1.08007 * 120.00000 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00251 * 180.02562 * 15 14 12 18 18 N 1.31405 * 119.99641 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46915 * 59.99832 * 19 17 15 21 21 H 1.48498 * 109.46911 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47208 * 300.00312 * 19 17 15 23 23 C 1.41795 * 106.90864 * 179.71467 * 3 2 1 24 24 C 1.36227 * 106.99935 * 0.40899 * 23 3 2 25 25 C 1.43200 * 125.76398 * 179.85081 * 24 23 3 26 26 N 4.71986 * 151.28567 * 179.97438 * 2 1 3 27 27 N 1.34330 * 125.85678 * 179.97438 * 2 1 3 28 28 C 1.46500 * 125.33325 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.47050 * 270.03972 * 1 2 3 30 30 H 1.09000 * 109.47351 * 30.04167 * 1 2 3 31 31 H 1.09007 * 109.47401 * 150.04452 * 1 2 3 32 32 H 1.07997 * 119.99889 * 43.20504 * 4 3 2 33 33 H 0.97001 * 120.00191 * 0.02562 * 10 8 5 34 34 H 1.09001 * 109.46759 * 300.00483 * 11 10 8 35 35 H 1.09004 * 109.47081 * 59.99629 * 11 10 8 36 36 H 0.97000 * 119.99938 * 0.02562 * 14 12 11 37 37 H 0.97002 * 119.99574 * 180.02562 * 18 17 15 38 38 H 1.08007 * 126.50345 * 180.25781 * 23 3 2 39 39 H 1.08991 * 109.47072 * 270.00992 * 28 27 2 40 40 H 1.08997 * 109.47150 * 30.01495 * 28 27 2 41 41 H 1.09005 * 109.46919 * 150.01443 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3201 1.1250 0.0000 4 6 1.8779 2.5191 -0.0007 5 6 2.4999 3.4397 -0.8188 6 6 2.2110 4.8350 -0.6758 7 7 1.9818 5.9419 -0.5624 8 6 3.4590 2.9884 -1.8371 9 8 3.6229 1.7989 -2.0336 10 7 4.1569 3.8921 -2.5531 11 6 5.1133 3.4423 -3.5676 12 6 5.7548 4.6400 -4.2194 13 8 5.4441 5.7593 -3.8705 14 7 6.6746 4.4674 -5.1893 15 6 7.2585 5.5570 -5.7819 16 1 6.9812 6.5538 -5.4718 17 6 8.2064 5.3791 -6.7823 18 7 8.5426 4.1665 -7.1606 19 14 9.0016 6.8638 -7.5902 20 1 9.7115 7.6660 -6.5617 21 1 9.9714 6.4078 -8.6181 22 1 7.9543 7.6980 -8.2325 23 6 3.6612 0.6646 0.0068 24 6 3.6149 -0.6968 0.0012 25 6 4.7478 -1.5728 0.0021 26 7 5.6464 -2.2676 0.0010 27 7 2.2938 -1.0887 0.0005 28 6 1.8215 -2.4755 0.0006 29 1 -0.3633 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5132 32 1 1.0645 2.8279 0.6392 33 1 4.0265 4.8404 -2.3962 34 1 5.8817 2.8296 -3.0961 35 1 4.5921 2.8538 -4.3227 36 1 6.9233 3.5723 -5.4681 37 1 9.2046 4.0423 -7.8587 38 1 4.5507 1.2772 0.0125 39 1 1.7038 -2.8191 1.0282 40 1 0.8622 -2.5326 -0.5138 41 1 2.5471 -3.1065 -0.5127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490940955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 62.681364 kcal Electronic energy + Delta-G solvation = -27738.922331 eV Core-core repulsion = 23621.187711 eV Total energy + Delta-G solvation = -4117.734620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84244 -39.73133 -38.17878 -36.71516 -36.60285 -34.86360 -34.20667 -33.60308 -32.63525 -31.77869 -31.35374 -28.28772 -27.24360 -26.86616 -24.81457 -23.86875 -21.53671 -21.17470 -19.89930 -19.61878 -18.75421 -18.11336 -17.97834 -16.24305 -15.95364 -15.72600 -15.60285 -15.37240 -14.98091 -14.56263 -14.34657 -14.17020 -14.03401 -13.88760 -13.73168 -13.68605 -13.43486 -13.34096 -13.30859 -13.02992 -12.91037 -12.78159 -12.70127 -12.30005 -12.23279 -12.15668 -12.14232 -11.89283 -11.61358 -11.08840 -10.49024 -10.33455 -10.26573 -9.71406 -9.61010 -8.86050 -8.61929 -8.47313 -8.08853 -8.06952 -6.49813 -3.91648 0.34483 1.24591 1.96124 2.42736 2.60238 2.78662 2.82110 3.15565 3.22921 3.25414 3.35533 3.36342 3.61893 3.67947 3.76401 3.85001 4.13089 4.27532 4.31458 4.59947 4.66284 4.71030 4.87287 4.90651 4.94340 5.05900 5.17819 5.18647 5.39761 5.46513 5.54528 5.79934 5.89284 5.95901 5.99318 6.07987 6.42639 6.60358 6.62836 6.73453 7.32341 7.42689 7.47772 7.74941 7.93462 8.36854 8.47467 9.06500 9.40751 9.89056 10.66996 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002535 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.259913 B =11042.301186 C =12732.505052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.107 3.893 3 C -0.180 4.180 4 C 0.103 3.897 5 C -0.130 4.130 6 C 0.246 3.754 7 N -0.407 5.407 8 C 0.562 3.438 9 O -0.522 6.522 10 N -0.702 5.702 11 C 0.110 3.890 12 C 0.426 3.574 13 O -0.596 6.596 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.007 4.007 24 C 0.031 3.969 25 C 0.284 3.716 26 N -0.416 5.416 27 N -0.416 5.416 28 C 0.064 3.936 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.275 0.725 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 -14.249 16.261 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 C -0.187 4.187 4 C 0.078 3.922 5 C -0.138 4.138 6 C -0.068 4.068 7 N -0.084 5.084 8 C 0.348 3.652 9 O -0.400 6.400 10 N -0.355 5.355 11 C -0.017 4.017 12 C 0.211 3.789 13 O -0.482 6.482 14 N -0.183 5.183 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.034 4.034 24 C -0.078 4.078 25 C -0.031 4.031 26 N -0.093 5.093 27 N -0.092 5.092 28 C -0.077 4.077 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.247 0.753 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.224 -14.165 16.292 27.618 hybrid contribution 0.427 0.432 -0.865 1.057 sum -16.797 -13.733 15.428 26.622 Atomic orbital electron populations 1.20542 0.86835 1.04388 1.03515 1.20834 0.93303 0.84882 1.02433 1.17974 0.92552 0.90717 1.17437 1.22143 0.91707 0.89594 0.88786 1.18194 1.06883 0.85369 1.03314 1.25555 0.94328 0.92633 0.94331 1.81301 1.07983 1.11275 1.07792 1.17567 0.80364 0.86011 0.81256 1.90886 1.66289 1.14995 1.67829 1.45721 1.40917 1.10983 1.37862 1.20970 0.92705 0.96507 0.91517 1.19772 0.84736 0.89739 0.84622 1.90521 1.66173 1.25180 1.66359 1.41779 1.34685 1.10067 1.31803 1.19683 1.19067 0.88506 1.16191 0.87748 1.25313 0.97193 0.98025 0.97128 1.69605 1.32699 1.20805 1.30410 0.85880 0.78820 0.80598 0.78731 1.19766 1.20856 1.19770 1.21001 0.96953 0.90588 0.94902 1.15008 0.79480 0.90502 1.22768 1.24340 0.92832 0.92859 0.93028 1.81307 1.09370 1.07567 1.11095 1.43311 1.04290 1.06502 1.55053 1.22194 1.02151 0.79423 1.03939 0.89783 0.89159 0.90915 0.83829 0.75276 0.89504 0.89547 0.77034 0.91552 0.83169 0.90056 0.88852 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 9.89 36.00 0.36 0.10 16 2 C 0.11 0.68 6.95 -81.29 -0.57 0.12 16 3 C -0.18 -1.50 4.76 -105.11 -0.50 -2.00 16 4 C 0.10 0.75 9.48 -36.46 -0.35 0.40 16 5 C -0.13 -1.39 5.87 -104.52 -0.61 -2.00 16 6 C 0.25 3.07 14.20 -22.47 -0.32 2.75 16 7 N -0.41 -6.06 18.54 41.84 0.78 -5.28 16 8 C 0.56 7.78 7.33 -12.71 -0.09 7.69 16 9 O -0.52 -7.74 12.05 5.22 0.06 -7.68 16 10 N -0.70 -11.44 5.48 -62.70 -0.34 -11.79 16 11 C 0.11 1.97 6.15 -5.20 -0.03 1.94 16 12 C 0.43 9.80 7.85 -10.99 -0.09 9.72 16 13 O -0.60 -15.62 15.24 5.55 0.08 -15.54 16 14 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 15 C -0.31 -8.37 9.68 -14.94 -0.14 -8.51 16 16 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 19 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.01 -0.07 7.63 -38.95 -0.30 -0.37 16 24 C 0.03 0.30 6.68 -83.98 -0.56 -0.26 16 25 C 0.28 3.31 15.10 -22.47 -0.34 2.97 16 26 N -0.42 -5.69 18.54 41.84 0.78 -4.92 16 27 N -0.42 -2.97 3.12 -116.58 -0.36 -3.34 16 28 C 0.06 0.24 10.65 59.85 0.64 0.88 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.22 7.94 -51.93 -0.41 -0.20 16 31 H 0.07 0.12 6.97 -51.92 -0.36 -0.24 16 32 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 33 H 0.41 7.19 6.33 -40.82 -0.26 6.93 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.15 1.62 7.60 -52.48 -0.40 1.22 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.14 6.93 -51.93 -0.36 -0.21 16 41 H 0.08 0.38 7.74 -51.93 -0.40 -0.02 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -34.86 377.40 -4.82 -39.68 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.14 Total: 10.38 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -3.00 Total: 14.02 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 1.51 Total: -62.33 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.15 Total: -23.22 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.86 -4.82 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490940955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.358 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds