Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46864 * 64.50706 * 3 2 1 5 5 C 1.36971 * 120.00222 * 269.99953 * 4 3 2 6 6 H 1.07994 * 120.00379 * 140.15238 * 5 4 3 7 7 C 1.38985 * 120.00031 * 320.14734 * 5 4 3 8 8 N 1.31418 * 119.99800 * 163.48309 * 7 5 4 9 9 Si 1.86797 * 119.99975 * 343.48694 * 7 5 4 10 10 H 1.48496 * 109.47149 * 95.39683 * 9 7 5 11 11 H 1.48502 * 109.46937 * 215.40103 * 9 7 5 12 12 H 1.48499 * 109.47124 * 335.39565 * 9 7 5 13 13 C 1.34781 * 119.99926 * 90.00622 * 4 3 2 14 14 O 1.21636 * 119.99422 * 5.51521 * 13 4 3 15 15 C 1.47327 * 120.00324 * 185.51643 * 13 4 3 16 16 C 1.41357 * 126.42025 * 85.88551 * 15 13 4 17 17 C 1.50699 * 125.96267 * 0.02778 * 16 15 13 18 18 N 1.30474 * 108.06794 * 179.76528 * 16 15 13 19 19 N 1.39926 * 108.93543 * 0.41078 * 18 16 15 20 20 C 1.40208 * 125.76936 * 179.85001 * 19 18 16 21 21 C 1.38842 * 120.03866 * 324.69023 * 20 19 18 22 22 C 1.38102 * 119.95483 * 180.02562 * 21 20 19 23 23 C 1.38483 * 120.04294 * 0.26638 * 22 21 20 24 24 F 1.35100 * 119.95732 * 179.70415 * 23 22 21 25 25 C 1.38489 * 120.08511 * 359.45749 * 23 22 21 26 26 C 1.38099 * 120.04067 * 0.54870 * 25 23 22 27 27 C 1.34550 * 108.46585 * 359.58242 * 19 18 16 28 28 C 1.50696 * 126.31615 * 180.21908 * 27 19 18 29 29 H 4.40638 * 5.51418 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.46737 * 304.50923 * 3 2 1 31 31 H 1.08997 * 109.46963 * 184.51520 * 3 2 1 32 32 H 0.96991 * 119.99411 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47253 * 89.99567 * 17 16 15 34 34 H 1.08999 * 109.47169 * 209.99365 * 17 16 15 35 35 H 1.09002 * 109.47130 * 329.99828 * 17 16 15 36 36 H 1.08000 * 120.02445 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.97589 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.98459 * 180.26966 * 25 23 22 39 39 H 1.07998 * 120.02242 * 179.74895 * 26 25 23 40 40 H 1.09003 * 109.47203 * 90.03204 * 28 27 19 41 41 H 1.09003 * 109.47393 * 210.02647 * 28 27 19 42 42 H 1.08998 * 109.47583 * 330.02846 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5936 -1.2467 5 6 3.3634 -1.9421 -1.3191 6 1 3.0959 -2.4882 -2.2116 7 6 3.9401 -2.6078 -0.2439 8 7 3.8678 -3.9177 -0.1668 9 14 4.8176 -1.6405 1.0916 10 1 3.8817 -1.3888 2.2167 11 1 5.9832 -2.4191 1.5820 12 1 5.2857 -0.3446 0.5378 13 6 3.3589 0.1867 -2.3226 14 8 3.2526 1.3948 -2.2303 15 6 3.7329 -0.4238 -3.6103 16 6 2.8460 -0.9204 -4.5926 17 6 1.3414 -0.9189 -4.5084 18 7 3.5575 -1.3751 -5.5873 19 7 4.9142 -1.2033 -5.2911 20 6 5.9862 -1.5725 -6.1158 21 6 5.9000 -2.7169 -6.8972 22 6 6.9572 -3.0792 -7.7085 23 6 8.1050 -2.3049 -7.7389 24 9 9.1405 -2.6641 -8.5287 25 6 8.1906 -1.1599 -6.9645 26 6 7.1356 -0.7944 -6.1518 27 6 5.0160 -0.6186 -4.0836 28 6 6.2940 -0.2456 -3.3775 29 1 -1.0499 0.0001 -0.0002 30 1 3.0096 -0.5814 0.8469 31 1 3.0089 1.0253 0.0809 32 1 4.2699 -4.3822 0.5838 33 1 0.9545 0.0069 -4.9342 34 1 0.9455 -1.7681 -5.0653 35 1 1.0358 -0.9944 -3.4649 36 1 5.0071 -3.3238 -6.8700 37 1 6.8907 -3.9695 -8.3162 38 1 9.0848 -0.5549 -6.9927 39 1 7.2043 0.0963 -5.5449 40 1 6.5782 0.7700 -3.6530 41 1 6.1430 -0.3007 -2.2994 42 1 7.0853 -0.9361 -3.6693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = 98.753275 kcal Electronic energy + Delta-G solvation = -29282.371906 eV Core-core repulsion = 25146.281519 eV Total energy + Delta-G solvation = -4136.090386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.07336 -41.42122 -39.16398 -38.43021 -35.23731 -33.97483 -32.74519 -32.14671 -31.61985 -31.15463 -29.97507 -27.88899 -26.98734 -26.40702 -24.87808 -23.42459 -22.76705 -21.11043 -19.51451 -18.89066 -18.44148 -17.86492 -17.51920 -16.71957 -16.43625 -15.95513 -15.77632 -15.56576 -14.92399 -14.72178 -14.41549 -13.97320 -13.86712 -13.74968 -13.45051 -13.35607 -13.14726 -13.01048 -12.95018 -12.68199 -12.61889 -12.20495 -12.13430 -11.98541 -11.97748 -11.57133 -11.24839 -11.06903 -10.80874 -10.38748 -10.28817 -9.85672 -9.59095 -9.51262 -9.40648 -9.30199 -8.82646 -8.48756 -8.04556 -7.75525 -6.51524 -4.17550 0.66642 0.94620 2.15583 2.50027 2.90810 2.95180 3.11584 3.15304 3.26066 3.33873 3.47590 3.53512 4.02685 4.02734 4.42801 4.56342 4.57292 4.77878 4.80841 4.90301 4.94568 5.07244 5.10953 5.25296 5.49608 5.62335 5.65038 5.67787 5.82950 5.85478 5.90408 5.93059 5.95198 6.01256 6.11003 6.15962 6.25952 6.30860 6.42829 6.48848 6.51366 6.93465 7.21955 7.35036 7.95433 7.97370 8.21116 8.21414 8.84769 9.21100 9.51586 10.59113 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.003616 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.997480 B = 7740.929124 C = 8491.148957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C 0.200 3.800 4 N -0.453 5.453 5 C -0.335 4.335 6 H 0.105 0.895 7 C 0.068 3.932 8 N -0.860 5.860 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.565 3.435 14 O -0.584 6.584 15 C -0.209 4.209 16 C 0.123 3.877 17 C -0.073 4.073 18 N -0.300 5.300 19 N -0.325 5.325 20 C 0.162 3.838 21 C -0.083 4.083 22 C -0.133 4.133 23 C 0.087 3.913 24 F -0.139 7.139 25 C -0.131 4.131 26 C -0.109 4.109 27 C 0.122 3.878 28 C -0.096 4.096 29 H 0.213 0.787 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.275 0.725 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 3.284 -9.300 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.166 4.166 3 C 0.078 3.922 4 N -0.173 5.173 5 C -0.462 4.462 6 H 0.123 0.877 7 C -0.139 4.139 8 N -0.495 5.495 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.181 1.181 13 C 0.353 3.647 14 O -0.467 6.467 15 C -0.222 4.222 16 C -0.044 4.044 17 C -0.131 4.131 18 N -0.119 5.119 19 N -0.100 5.100 20 C 0.069 3.931 21 C -0.103 4.103 22 C -0.152 4.152 23 C 0.067 3.933 24 F -0.118 7.118 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.003 4.003 28 C -0.154 4.154 29 H 0.230 0.770 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.354 3.104 -10.330 12.042 hybrid contribution 0.419 0.268 1.495 1.576 sum 5.772 3.372 -8.835 11.079 Atomic orbital electron populations 1.24650 0.95594 1.02909 1.01097 1.23641 0.94787 0.98548 0.99659 1.18693 0.84076 0.99930 0.89507 1.43638 1.56519 1.08257 1.08865 1.19020 1.41419 0.80509 1.05228 0.87718 1.25335 0.95719 0.95250 0.97640 1.69702 1.41267 1.07413 1.31118 0.87078 0.80148 0.81182 0.82161 1.19809 1.21098 1.18135 1.17297 0.78915 0.85191 0.83328 1.90659 1.56448 1.14288 1.85331 1.19725 0.91359 1.12791 0.98367 1.22363 0.96882 0.94589 0.90583 1.20228 0.86218 1.02668 1.04035 1.77087 0.84672 1.26619 1.23546 1.45162 1.04219 1.47415 1.13254 1.17463 0.86392 0.94896 0.94324 1.20897 0.99378 0.94661 0.95347 1.21025 0.92117 1.01005 1.01056 1.17701 0.85594 0.96125 0.93901 1.91502 1.56620 1.91582 1.72076 1.20930 1.00129 0.96699 0.97273 1.21010 0.92211 0.99876 0.99815 1.21219 0.96728 0.96370 0.85968 1.20637 0.91568 1.01456 1.01751 0.77042 0.89596 0.88496 0.91417 0.90465 0.90645 0.89775 0.83696 0.83902 0.83836 0.83836 0.89996 0.88823 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 19.25 29.55 0.57 -3.46 16 2 C -0.17 -3.46 13.67 -37.12 -0.51 -3.96 16 3 C 0.20 4.39 4.65 -6.83 -0.03 4.36 16 4 N -0.45 -10.68 2.12 -119.18 -0.25 -10.94 16 5 C -0.33 -8.52 9.12 -14.98 -0.14 -8.66 16 6 H 0.11 2.92 7.48 -52.49 -0.39 2.53 16 7 C 0.07 1.73 5.38 -17.45 -0.09 1.64 16 8 N -0.86 -23.29 13.96 55.50 0.77 -22.52 16 9 Si 0.87 19.26 24.76 -169.99 -4.21 15.06 16 10 H -0.27 -5.83 6.76 56.52 0.38 -5.44 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.26 -5.56 7.06 56.52 0.40 -5.17 16 13 C 0.56 13.10 6.78 -12.56 -0.09 13.01 16 14 O -0.58 -14.47 16.66 5.25 0.09 -14.39 16 15 C -0.21 -4.46 4.34 -105.05 -0.46 -4.91 16 16 C 0.12 2.45 7.20 -81.98 -0.59 1.86 16 17 C -0.07 -1.22 10.28 36.01 0.37 -0.85 16 18 N -0.30 -5.72 12.25 33.91 0.42 -5.31 16 19 N -0.33 -5.79 3.71 -6.48 -0.02 -5.81 16 20 C 0.16 2.36 6.26 -83.58 -0.52 1.84 16 21 C -0.08 -1.08 9.75 -39.41 -0.38 -1.46 16 22 C -0.13 -1.44 10.02 -39.54 -0.40 -1.84 16 23 C 0.09 0.94 7.30 -39.40 -0.29 0.66 16 24 F -0.14 -1.54 17.27 2.25 0.04 -1.51 16 25 C -0.13 -1.33 10.02 -39.54 -0.40 -1.73 16 26 C -0.11 -1.28 8.25 -39.41 -0.33 -1.61 16 27 C 0.12 2.30 6.84 -81.44 -0.56 1.74 16 28 C -0.10 -1.48 8.41 36.00 0.30 -1.18 16 29 H 0.21 2.80 7.80 -54.09 -0.42 2.38 16 30 H 0.09 1.90 3.13 -51.93 -0.16 1.73 16 31 H 0.10 2.03 7.35 -51.93 -0.38 1.65 16 32 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 36 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.14 1.53 6.05 -52.49 -0.32 1.21 16 40 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 41 H 0.09 1.62 7.97 -51.93 -0.41 1.20 16 42 H 0.08 1.00 6.86 -51.93 -0.36 0.64 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.12 370.29 -5.65 -36.77 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.53 Total: 7.62 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.53 Total: -4.55 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.91 Total: -44.58 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.21 Total: 15.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.12 -5.65 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.523 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds