Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30212 * 126.78371 * 2 1 4 4 O 1.20916 * 111.64509 * 180.02562 * 3 2 1 5 5 C 1.34074 * 111.55161 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79655 * 179.73614 * 5 4 3 7 7 C 1.35669 * 106.40245 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.01203 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47112 * 90.02792 * 8 7 5 10 10 C 1.50706 * 109.47106 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99924 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99986 * 179.97438 * 10 9 8 13 13 C 1.47080 * 120.87803 * 359.72298 * 12 10 9 14 14 C 1.53696 * 108.27913 * 128.75749 * 13 12 10 15 15 N 1.46896 * 109.26065 * 54.07567 * 14 13 12 16 16 C 1.46897 * 111.00001 * 172.61185 * 15 14 13 17 17 C 1.50695 * 109.47052 * 294.29770 * 16 15 14 18 18 H 1.08005 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99947 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47273 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47003 * 119.99892 * 21 19 17 24 24 H 1.48500 * 109.47170 * 239.99964 * 21 19 17 25 25 C 1.46902 * 111.26929 * 296.76288 * 15 14 13 26 26 C 1.47073 * 120.88235 * 179.97438 * 12 10 9 27 27 H 1.08997 * 109.47108 * 89.97549 * 1 2 3 28 28 H 1.09005 * 109.46882 * 209.97509 * 1 2 3 29 29 H 1.08994 * 109.47463 * 329.97022 * 1 2 3 30 30 H 1.09003 * 109.47651 * 210.03046 * 8 7 5 31 31 H 1.09000 * 109.47214 * 330.02559 * 8 7 5 32 32 H 1.09006 * 109.46574 * 299.99826 * 9 8 7 33 33 H 1.08994 * 109.47555 * 60.00129 * 9 8 7 34 34 H 1.09010 * 109.62543 * 248.51649 * 13 12 10 35 35 H 1.09000 * 109.63178 * 9.09833 * 13 12 10 36 36 H 1.09001 * 109.64635 * 294.07290 * 14 13 12 37 37 H 1.08999 * 109.42367 * 173.94587 * 14 13 12 38 38 H 1.08999 * 109.47476 * 54.30437 * 16 15 14 39 39 H 1.09004 * 109.46850 * 174.30273 * 16 15 14 40 40 H 0.97003 * 120.00166 * 179.97438 * 20 19 17 41 41 H 1.09010 * 109.48875 * 303.14290 * 25 15 14 42 42 H 1.08996 * 109.49383 * 183.06430 * 25 15 14 43 43 H 1.09002 * 109.63197 * 350.90240 * 26 12 10 44 44 H 1.09001 * 109.62651 * 111.47959 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7271 -0.0005 5 6 3.6037 -0.6053 -0.0015 6 17 5.1013 -1.4833 -0.0088 7 6 2.3532 -1.1313 -0.0010 8 6 1.9581 -2.5856 -0.0022 9 6 1.8250 -3.0792 1.4399 10 6 1.4306 -4.5337 1.4387 11 8 1.2711 -5.1179 0.3879 12 7 1.2550 -5.1853 2.6054 13 6 1.4491 -4.4973 3.8908 14 6 0.2048 -4.7396 4.7599 15 7 -0.0424 -6.1841 4.8602 16 6 -1.1155 -6.4689 5.8222 17 6 -0.6662 -6.0777 7.2063 18 1 0.3180 -5.6589 7.3564 19 6 -1.5114 -6.2545 8.2812 20 7 -2.7096 -6.7649 8.0986 21 14 -0.9547 -5.7689 9.9969 22 1 0.4246 -5.2223 9.9336 23 1 -1.8718 -4.7351 10.5408 24 1 -0.9746 -6.9625 10.8801 25 6 -0.3458 -6.7654 3.5457 26 6 0.8696 -6.6044 2.6269 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3634 0.8896 0.5143 30 1 1.0038 -2.7026 -0.5158 31 1 2.7215 -3.1691 -0.5169 32 1 2.7794 -2.9623 1.9534 33 1 1.0616 -2.4958 1.9546 34 1 2.3317 -4.8970 4.3903 35 1 1.5748 -3.4283 3.7188 36 1 -0.6591 -4.2533 4.3067 37 1 0.3727 -4.3292 5.7557 38 1 -2.0048 -5.8985 5.5540 39 1 -1.3474 -7.5339 5.8029 40 1 -3.3041 -6.8895 8.8548 41 1 -1.2020 -6.2508 3.1093 42 1 -0.5772 -7.8242 3.6608 43 1 0.6120 -6.9292 1.6187 44 1 1.6975 -7.2029 3.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = 25.732168 kcal Electronic energy + Delta-G solvation = -27234.262612 eV Core-core repulsion = 23216.033249 eV Total energy + Delta-G solvation = -4018.229363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.43992 -40.10777 -37.75859 -37.57110 -36.15248 -34.46170 -33.52037 -32.48582 -31.34845 -30.45924 -29.14026 -28.32943 -26.18280 -24.95857 -23.30026 -22.23952 -21.89272 -21.56464 -20.46601 -18.68655 -18.19543 -18.09394 -17.10953 -16.44253 -16.10443 -15.79520 -15.44133 -14.80854 -14.52961 -14.38091 -14.06787 -13.82555 -13.77059 -13.62824 -13.44078 -13.23208 -13.02608 -12.90624 -12.65965 -12.62343 -12.27081 -12.14758 -11.93923 -11.58999 -11.34517 -11.14246 -11.09188 -11.02352 -10.79989 -10.69387 -10.55827 -10.32476 -9.95736 -9.78839 -9.52970 -9.31739 -8.56538 -8.48680 -7.38926 -6.11019 -4.13262 0.68117 0.80805 1.65452 2.63380 3.02487 3.23617 3.25318 3.33358 3.36915 3.63839 4.14168 4.34460 4.38602 4.41852 4.68759 4.74633 4.87913 4.91891 5.10626 5.12882 5.22820 5.25938 5.29872 5.32735 5.37865 5.47868 5.59205 5.61303 5.66525 5.72099 5.82550 5.83476 5.98232 6.22806 6.38446 6.40382 6.61662 7.16445 7.22095 7.48248 7.67526 7.69399 7.96001 8.06378 8.18226 8.41878 8.94224 9.51670 10.99802 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.002369 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.694332 B =11817.639785 C =12364.634415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.035 3.965 3 N -0.347 5.347 4 O 0.110 5.890 5 C -0.001 4.001 6 Cl 0.050 6.950 7 C -0.164 4.164 8 C -0.029 4.029 9 C -0.136 4.136 10 C 0.515 3.485 11 O -0.551 6.551 12 N -0.607 5.607 13 C 0.107 3.893 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.233 11.499 -17.009 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 N -0.053 5.053 4 O 0.042 5.958 5 C -0.091 4.091 6 Cl 0.078 6.922 7 C -0.168 4.168 8 C -0.067 4.067 9 C -0.176 4.176 10 C 0.303 3.697 11 O -0.430 6.430 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.079 4.079 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.324 12.146 -17.277 23.964 hybrid contribution -0.387 -0.226 0.909 1.013 sum 10.937 11.920 -16.369 23.014 Atomic orbital electron populations 1.20270 0.85024 1.04497 1.03955 1.23388 0.99252 0.87772 1.01908 1.73960 0.88533 1.22968 1.19839 1.84923 1.22116 1.20717 1.68013 1.24618 0.91086 0.84946 1.08408 1.98467 1.28139 1.68873 1.96686 1.20900 0.89787 0.98388 1.07754 1.19713 1.04183 0.86433 0.96370 1.21656 1.04057 0.93632 0.98262 1.20463 0.77065 0.88770 0.83376 1.90676 1.52322 1.69128 1.30871 1.48244 1.67623 1.12089 1.06014 1.22141 0.99872 0.96430 0.83102 1.22410 0.94733 0.90576 1.00192 1.62074 1.46600 1.10835 1.06600 1.19729 0.86819 0.96769 0.89802 1.21167 1.00905 1.41583 0.91197 0.91742 1.24997 0.94862 0.95341 0.99376 1.69962 1.07600 1.44836 1.31246 0.86448 0.78723 0.78184 0.84096 1.19608 1.21103 1.20972 1.22401 0.95088 1.00682 0.90661 1.21754 0.97680 0.80603 1.00442 0.89626 0.89387 0.89983 0.88899 0.89152 0.88660 0.88539 0.90441 0.90194 0.95670 0.88453 0.99112 0.95011 0.92883 0.95558 0.90051 0.89370 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.17 16 2 C 0.04 0.33 7.32 -82.12 -0.60 -0.27 16 3 N -0.35 -3.81 12.07 33.43 0.40 -3.41 16 4 O 0.11 1.15 11.20 17.09 0.19 1.34 16 5 C 0.00 -0.01 8.12 29.81 0.24 0.24 16 6 Cl 0.05 0.39 29.23 -51.86 -1.52 -1.13 16 7 C -0.16 -1.49 5.58 -104.39 -0.58 -2.07 16 8 C -0.03 -0.26 4.90 -27.88 -0.14 -0.40 16 9 C -0.14 -1.28 4.05 -27.88 -0.11 -1.39 16 10 C 0.52 6.73 7.71 -10.98 -0.08 6.64 16 11 O -0.55 -8.76 15.44 5.55 0.09 -8.67 16 12 N -0.61 -8.35 3.00 -172.20 -0.52 -8.87 16 13 C 0.11 1.40 6.53 -3.36 -0.02 1.38 16 14 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 15 N -0.54 -10.67 4.62 -235.49 -1.09 -11.76 16 16 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 17 C -0.51 -13.56 8.41 -34.44 -0.29 -13.85 16 18 H 0.06 1.68 7.13 -52.48 -0.37 1.30 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.04 0.70 5.62 -3.72 -0.02 0.68 16 26 C 0.12 1.73 6.59 -3.62 -0.02 1.70 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.10 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.10 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 1.78 6.67 -51.93 -0.35 1.44 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 43 H 0.09 1.28 7.06 -51.93 -0.37 0.92 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -31.04 378.70 -8.81 -39.86 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.40 Total: -3.22 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.40 Total: -0.49 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.47 Total: -49.17 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.28 Total: -7.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.52 Total: -1.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.04 -8.81 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.587 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds