Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30214 * 126.79098 * 2 1 4 4 O 1.20914 * 111.64617 * 180.28607 * 3 2 1 5 5 C 1.34071 * 111.55371 * 359.69720 * 4 3 2 6 6 Cl 1.73602 * 126.79756 * 180.02562 * 5 4 3 7 7 C 1.35674 * 106.40397 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01346 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47054 * 90.01871 * 8 7 5 10 10 C 1.50699 * 109.47054 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00127 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00113 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.46134 * 275.02623 * 13 12 10 15 15 C 1.53190 * 109.31578 * 178.60093 * 14 13 12 16 16 N 1.46924 * 108.76777 * 54.65535 * 15 14 13 17 17 C 1.36937 * 120.63726 * 126.40369 * 16 15 14 18 18 H 1.08003 * 119.99247 * 331.83767 * 17 16 15 19 19 C 1.38808 * 120.00319 * 151.82896 * 17 16 15 20 20 N 1.31618 * 119.99879 * 343.06947 * 19 17 16 21 21 Si 1.86796 * 119.99897 * 163.07501 * 19 17 16 22 22 H 1.48507 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47388 * 119.99892 * 21 19 17 24 24 H 1.48511 * 109.47027 * 239.99921 * 21 19 17 25 25 C 1.46932 * 118.73684 * 306.38811 * 16 15 14 26 26 C 1.53039 * 109.46188 * 154.97080 * 13 12 10 27 27 H 1.09006 * 109.47302 * 270.20617 * 1 2 3 28 28 H 1.09009 * 109.47015 * 30.20285 * 1 2 3 29 29 H 1.08998 * 109.47605 * 150.20381 * 1 2 3 30 30 H 1.08999 * 109.47283 * 330.02458 * 8 7 5 31 31 H 1.08995 * 109.47235 * 210.01806 * 8 7 5 32 32 H 1.09000 * 109.47098 * 60.00316 * 9 8 7 33 33 H 1.08997 * 109.47535 * 299.99877 * 9 8 7 34 34 H 0.97000 * 120.00132 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46197 * 34.99575 * 13 12 10 36 36 H 1.09000 * 109.49810 * 298.56826 * 14 13 12 37 37 H 1.09000 * 109.50082 * 58.66000 * 14 13 12 38 38 H 1.09000 * 109.60155 * 294.86605 * 15 14 13 39 39 H 1.09000 * 109.70652 * 174.50217 * 15 14 13 40 40 H 0.97004 * 119.99630 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.58549 * 293.81385 * 25 16 15 42 42 H 1.08994 * 109.70387 * 173.46645 * 25 16 15 43 43 H 1.09001 * 109.49945 * 301.33811 * 26 13 12 44 44 H 1.09004 * 109.49566 * 61.40382 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4539 0.7269 -0.0056 5 6 3.6036 -0.6054 -0.0036 6 17 5.1011 -1.4836 -0.0092 7 6 2.3530 -1.1315 0.0037 8 6 1.9579 -2.5857 0.0091 9 6 1.8306 -3.0742 1.4535 10 6 1.4349 -4.5283 1.4590 11 8 1.2713 -5.1162 0.4109 12 7 1.2628 -5.1755 2.6286 13 6 0.8787 -6.5891 2.6339 14 6 -0.6426 -6.7046 2.5138 15 6 -1.0377 -8.1844 2.4845 16 7 -0.4741 -8.8476 3.6682 17 6 -1.2761 -9.5680 4.5126 18 1 -2.3207 -9.3128 4.6138 19 6 -0.7467 -10.6262 5.2384 20 7 0.4072 -11.1530 4.8871 21 14 -1.6720 -11.3026 6.7134 22 1 -2.9339 -10.5418 6.8977 23 1 -1.9865 -12.7360 6.4857 24 1 -0.8309 -11.1675 7.9298 25 6 0.9666 -8.7236 3.9286 26 6 1.3393 -7.2378 3.9413 27 1 -0.3634 0.0037 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 2.7193 -3.1711 -0.5065 31 1 1.0016 -2.7043 -0.5001 32 1 1.0693 -2.4889 1.9692 33 1 2.7870 -2.9557 1.9628 34 1 1.3940 -4.7054 3.4669 35 1 1.3490 -7.0964 1.7915 36 1 -1.1129 -6.2191 3.3689 37 1 -0.9726 -6.2219 1.5940 38 1 -0.6428 -8.6505 1.5818 39 1 -2.1238 -8.2751 2.4974 40 1 0.7773 -11.8923 5.3945 41 1 1.5250 -9.2337 3.1437 42 1 1.2051 -9.1685 4.8946 43 1 2.4201 -7.1346 4.0377 44 1 0.8505 -6.7468 4.7829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609332779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 9.769372 kcal Electronic energy + Delta-G solvation = -26943.204683 eV Core-core repulsion = 22924.283120 eV Total energy + Delta-G solvation = -4018.921562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.15492 -40.96028 -39.01146 -38.28026 -36.89884 -35.94283 -34.24279 -33.85264 -32.04646 -31.61062 -30.91968 -29.69995 -27.31359 -26.04324 -23.95019 -23.59432 -22.60674 -22.31851 -21.28852 -20.79850 -19.03300 -18.80951 -18.77359 -17.81426 -17.16483 -16.83701 -16.64995 -16.15041 -15.60833 -15.34306 -15.22771 -14.88531 -14.59165 -14.46847 -14.26469 -14.13559 -13.91418 -13.78135 -13.63490 -13.54368 -13.24391 -13.16080 -13.00145 -12.84660 -12.62189 -12.50324 -12.22789 -12.18567 -11.98220 -11.85569 -11.81260 -11.53142 -11.32910 -11.03687 -10.78962 -10.56165 -10.27325 -9.93959 -8.70148 -7.87618 -5.33296 0.01121 0.09507 0.97488 1.47756 1.49902 1.60416 1.73666 2.24638 2.52171 2.54325 3.00477 3.28435 3.47511 3.65861 3.73965 3.74925 3.93760 4.02937 4.07451 4.28298 4.30415 4.36812 4.48453 4.56519 4.67322 4.67753 4.70297 4.78017 4.84149 4.88882 5.01201 5.04866 5.07564 5.08886 5.17982 5.25440 5.32455 5.48815 5.61828 5.65586 5.72530 6.39453 6.68227 6.96810 7.14971 7.36988 7.84799 8.37337 9.19498 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.001998 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.515562 B =14009.615502 C =14576.442346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.037 3.963 3 N -0.372 5.372 4 O 0.096 5.904 5 C -0.002 4.002 6 Cl 0.060 6.940 7 C -0.163 4.163 8 C -0.025 4.025 9 C -0.125 4.125 10 C 0.511 3.489 11 O -0.583 6.583 12 N -0.713 5.713 13 C 0.162 3.838 14 C -0.122 4.122 15 C 0.143 3.857 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.178 3.822 26 C -0.129 4.129 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.006 0.994 39 H 0.057 0.943 40 H 0.250 0.750 41 H -0.007 1.007 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 24.928 -7.167 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 N -0.081 5.081 4 O 0.032 5.968 5 C -0.092 4.092 6 Cl 0.088 6.912 7 C -0.168 4.168 8 C -0.063 4.063 9 C -0.165 4.165 10 C 0.299 3.701 11 O -0.463 6.463 12 N -0.364 5.364 13 C 0.057 3.943 14 C -0.162 4.162 15 C 0.017 3.983 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.190 1.190 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.051 3.949 26 C -0.168 4.168 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.251 0.749 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.011 0.989 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.525 25.624 -7.833 27.358 hybrid contribution 0.149 -1.597 0.898 1.838 sum 5.674 24.027 -6.935 25.644 Atomic orbital electron populations 1.20429 0.83197 1.05124 1.05151 1.23846 1.00403 0.87325 1.00565 1.73966 0.88849 1.23905 1.21339 1.84895 1.22182 1.21220 1.68519 1.24811 0.91734 0.84754 1.07925 1.98478 1.27647 1.68483 1.96594 1.20894 0.89639 0.98302 1.07916 1.19637 1.03981 0.86128 0.96593 1.21618 1.05614 0.90662 0.98595 1.21141 0.75813 0.89985 0.83122 1.90712 1.52817 1.69900 1.32904 1.46089 1.69738 1.11324 1.09290 1.20606 0.94589 0.81219 0.97935 1.22150 0.95700 0.97040 1.01327 1.20983 0.97231 0.91646 0.88439 1.44365 1.04858 1.58685 1.25416 1.19548 0.93984 1.07867 1.17708 0.91465 1.25821 0.98779 0.96632 1.03415 1.70193 1.21682 1.25739 1.40615 0.85200 0.78381 0.77400 0.79393 1.19020 1.22203 1.21447 1.20563 0.83328 0.91742 0.99240 1.22246 1.00781 0.97379 0.96419 0.88100 0.89723 0.88308 0.90112 0.88834 0.86077 0.87020 0.74944 0.92547 0.91475 0.91896 0.97628 0.92477 0.94053 0.98915 0.92019 0.90603 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 71.23 0.74 -0.03 16 2 C 0.04 0.58 7.32 43.55 0.32 0.90 16 3 N -0.37 -7.27 12.07 -49.44 -0.60 -7.86 16 4 O 0.10 1.83 11.20 71.36 0.80 2.63 16 5 C 0.00 -0.04 8.12 67.23 0.55 0.51 16 6 Cl 0.06 0.83 29.23 -2.72 -0.08 0.75 16 7 C -0.16 -2.47 5.58 -19.71 -0.11 -2.58 16 8 C -0.03 -0.38 4.90 29.85 0.15 -0.23 16 9 C -0.13 -1.68 5.68 29.85 0.17 -1.51 16 10 C 0.51 11.53 7.79 87.66 0.68 12.21 16 11 O -0.58 -18.48 15.64 -3.04 -0.05 -18.53 16 12 N -0.71 -15.95 5.08 -442.42 -2.25 -18.20 16 13 C 0.16 5.09 2.42 45.02 0.11 5.20 16 14 C -0.12 -4.09 5.65 30.67 0.17 -3.91 16 15 C 0.14 6.03 6.52 86.36 0.56 6.59 16 16 N -0.61 -30.23 2.99 -699.09 -2.09 -32.33 16 17 C -0.26 -14.13 9.58 84.03 0.81 -13.32 16 18 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 19 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 20 N -0.94 -54.79 11.19 21.65 0.24 -54.55 16 21 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 C 0.18 8.31 5.30 86.36 0.46 8.77 16 26 C -0.13 -4.36 5.55 30.67 0.17 -4.19 16 27 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.10 0.74 7.65 -2.39 -0.02 0.72 16 30 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 31 H 0.09 1.43 7.61 -2.39 -0.02 1.41 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 6.53 8.60 -92.71 -0.80 5.73 16 35 H 0.06 2.11 7.58 -2.38 -0.02 2.09 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.06 3.25 6.06 -2.39 -0.01 3.23 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -69.45 379.18 3.43 -66.02 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.23 Total: 10.00 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.19 Total: 6.01 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.69 Total: -112.93 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.75 Total: -15.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -69.45 3.43 -66.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609332779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.792 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds