Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30214 * 126.78687 * 2 1 4 4 O 1.20914 * 111.64644 * 179.97438 * 3 2 1 5 5 C 1.34074 * 111.55103 * 359.75609 * 4 3 2 6 6 Cl 1.73602 * 126.79635 * 180.25653 * 5 4 3 7 7 C 1.35677 * 106.40324 * 0.38415 * 5 4 3 8 8 C 1.50703 * 128.01018 * 179.90897 * 7 5 4 9 9 C 1.50695 * 109.47270 * 269.67627 * 8 7 5 10 10 O 1.21283 * 119.99933 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00209 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00370 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.45690 * 34.99701 * 12 11 9 14 14 C 1.53043 * 109.45843 * 275.03021 * 12 11 9 15 15 C 1.53194 * 109.31118 * 301.34217 * 14 12 11 16 16 N 1.46928 * 108.77478 * 305.36454 * 15 14 12 17 17 C 1.36939 * 120.63132 * 233.58421 * 16 15 14 18 18 H 1.07997 * 119.99963 * 151.83272 * 17 16 15 19 19 C 1.38811 * 119.99890 * 331.83368 * 17 16 15 20 20 N 1.31615 * 120.00424 * 343.08500 * 19 17 16 21 21 Si 1.86798 * 119.99731 * 163.08431 * 19 17 16 22 22 H 1.48498 * 109.47642 * 59.99980 * 21 19 17 23 23 H 1.48499 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47302 * 299.99802 * 21 19 17 25 25 C 1.46921 * 118.73722 * 53.61181 * 16 15 14 26 26 C 1.53032 * 109.46194 * 154.97371 * 12 11 9 27 27 H 1.09007 * 109.50132 * 178.60576 * 26 12 11 28 28 C 1.53004 * 109.50029 * 298.70408 * 26 12 11 29 29 H 1.09002 * 109.46928 * 270.02557 * 1 2 3 30 30 H 1.09000 * 109.47005 * 30.02678 * 1 2 3 31 31 H 1.08996 * 109.47156 * 150.02761 * 1 2 3 32 32 H 1.09005 * 109.46435 * 149.67830 * 8 7 5 33 33 H 1.09001 * 109.47160 * 29.67727 * 8 7 5 34 34 H 0.97003 * 119.99927 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.49763 * 61.29420 * 14 12 11 36 36 H 1.08997 * 109.49805 * 181.39150 * 14 12 11 37 37 H 1.08997 * 109.58488 * 65.15415 * 15 14 12 38 38 H 1.09006 * 109.58632 * 185.57907 * 15 14 12 39 39 H 0.97000 * 120.00439 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.59145 * 66.17836 * 25 16 15 41 41 H 1.08999 * 109.58710 * 186.45670 * 25 16 15 42 42 H 1.08998 * 109.47016 * 59.99929 * 28 26 12 43 43 H 1.08997 * 109.47369 * 180.02562 * 28 26 12 44 44 H 1.08998 * 109.46464 * 300.00276 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6053 0.0062 6 17 5.1012 -1.4834 0.0152 7 6 2.3531 -1.1314 0.0007 8 6 1.9581 -2.5857 0.0018 9 6 1.8262 -3.0715 -1.4186 10 8 2.0330 -2.3117 -2.3410 11 7 1.4793 -4.3505 -1.6640 12 6 1.3516 -4.8229 -3.0448 13 1 2.0967 -4.3285 -3.6681 14 6 -0.0489 -4.4959 -3.5681 15 6 -1.0943 -5.1643 -2.6695 16 7 -0.8001 -6.6016 -2.5902 17 6 -1.7632 -7.5284 -2.8880 18 1 -1.4798 -8.4980 -3.2701 19 6 -3.1037 -7.2216 -2.6989 20 7 -3.4448 -6.2020 -1.9398 21 14 -4.4236 -8.2560 -3.5219 22 1 -4.3091 -9.6630 -3.0609 23 1 -5.7634 -7.7250 -3.1641 24 1 -4.2477 -8.2021 -4.9955 25 6 0.5469 -7.0256 -2.1846 26 6 1.5736 -6.3364 -3.0885 27 1 1.4542 -6.6923 -4.1119 28 6 2.9855 -6.6600 -2.5960 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.0040 -2.7026 0.5159 33 1 2.7218 -3.1693 0.5159 34 1 1.3142 -4.9583 -0.9262 35 1 -0.1979 -3.4162 -3.5586 36 1 -0.1529 -4.8691 -4.5869 37 1 -1.0519 -4.7270 -1.6721 38 1 -2.0878 -5.0175 -3.0933 39 1 -4.3815 -5.9874 -1.8080 40 1 0.7231 -6.7402 -1.1475 41 1 0.6355 -8.1073 -2.2858 42 1 3.1034 -6.3051 -1.5721 43 1 3.1433 -7.7381 -2.6277 44 1 3.7159 -6.1672 -3.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943547407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = 19.294506 kcal Electronic energy + Delta-G solvation = -28405.987711 eV Core-core repulsion = 24387.479190 eV Total energy + Delta-G solvation = -4018.508521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -46.15596 -41.20170 -39.20447 -38.26444 -36.43393 -35.89390 -33.99512 -33.47118 -32.84152 -31.81456 -30.02969 -29.43528 -27.35063 -26.86860 -24.10915 -23.32324 -22.68560 -22.55720 -21.53175 -20.05083 -19.07866 -18.86238 -18.60722 -18.01618 -16.85756 -16.78382 -16.64995 -15.91440 -15.70173 -15.41933 -15.15331 -14.86354 -14.64269 -14.47672 -14.29286 -14.18113 -14.03934 -13.68106 -13.49862 -13.45166 -13.19298 -13.12680 -12.94140 -12.81431 -12.65937 -12.49723 -12.32342 -12.20064 -11.96551 -11.91889 -11.62215 -11.42577 -11.17474 -11.07640 -10.82864 -10.48810 -10.27362 -9.92440 -8.61243 -7.83998 -5.28082 -0.04036 0.13017 0.94911 1.48418 1.51427 1.56693 1.70624 2.31588 2.53223 2.55302 2.97304 3.31373 3.47419 3.69709 3.75331 3.76911 3.84573 4.07358 4.12688 4.18117 4.40850 4.46224 4.56155 4.62298 4.64111 4.67558 4.71784 4.72856 4.82728 4.87894 5.03017 5.06606 5.12378 5.15882 5.24346 5.35866 5.48195 5.56594 5.64530 5.69357 5.79483 6.42704 6.65073 6.96279 7.19249 7.32748 7.91128 8.41247 9.21193 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003079 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.503640 B = 9090.875642 C =10283.260103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.039 3.961 3 N -0.372 5.372 4 O 0.098 5.902 5 C 0.007 3.993 6 Cl 0.065 6.935 7 C -0.152 4.152 8 C -0.065 4.065 9 C 0.517 3.483 10 O -0.578 6.578 11 N -0.703 5.703 12 C 0.170 3.830 13 H 0.072 0.928 14 C -0.143 4.143 15 C 0.189 3.811 16 N -0.607 5.607 17 C -0.262 4.262 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.283 1.283 25 C 0.150 3.850 26 C -0.107 4.107 27 H 0.071 0.929 28 C -0.133 4.133 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.409 0.591 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.010 0.990 38 H 0.044 0.956 39 H 0.248 0.752 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.412 6.534 6.950 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 N -0.081 5.081 4 O 0.034 5.966 5 C -0.083 4.083 6 Cl 0.094 6.906 7 C -0.157 4.157 8 C -0.105 4.105 9 C 0.304 3.696 10 O -0.458 6.458 11 N -0.355 5.355 12 C 0.065 3.935 13 H 0.090 0.910 14 C -0.183 4.183 15 C 0.063 3.937 16 N -0.331 5.331 17 C -0.393 4.393 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.575 5.575 21 Si 0.787 3.213 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.210 1.210 25 C 0.025 3.975 26 C -0.128 4.128 27 H 0.089 0.911 28 C -0.191 4.191 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.331 8.319 6.339 18.558 hybrid contribution -1.057 -1.360 -0.343 1.756 sum 14.274 6.959 5.996 16.974 Atomic orbital electron populations 1.20349 0.83757 1.04479 1.05077 1.23727 1.00180 0.87724 1.00295 1.73898 0.88836 1.23697 1.21683 1.84854 1.22084 1.21176 1.68533 1.24703 0.91667 0.84770 1.07138 1.98450 1.27162 1.68442 1.96570 1.20325 0.89942 0.97484 1.07998 1.20093 1.07263 0.88763 0.94368 1.20718 0.75743 0.81733 0.91443 1.90696 1.51943 1.55626 1.47501 1.45976 1.69010 1.11357 1.09144 1.20667 0.95580 0.94479 0.82731 0.90954 1.22392 0.97000 0.98996 0.99921 1.20408 0.95639 0.82706 0.94947 1.44248 1.08383 1.01641 1.78781 1.19433 0.86951 0.97134 1.35735 0.91719 1.25662 0.99545 0.99734 0.99118 1.70138 1.16084 1.31948 1.39282 0.85485 0.78511 0.78768 0.78524 1.20073 1.22273 1.20990 1.21072 0.83869 0.97531 0.95025 1.21788 0.96619 0.93248 1.01099 0.91069 1.21691 0.93801 1.02001 1.01577 0.87353 0.90020 0.89834 0.84611 0.84363 0.75356 0.93435 0.92730 0.97194 0.93794 0.94273 0.95302 0.92636 0.91727 0.91595 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.39 71.24 0.74 -0.84 16 2 C 0.04 0.98 7.32 43.55 0.32 1.29 16 3 N -0.37 -10.26 12.07 -49.44 -0.60 -10.86 16 4 O 0.10 2.55 11.20 71.32 0.80 3.35 16 5 C 0.01 0.17 8.12 67.23 0.55 0.72 16 6 Cl 0.07 1.18 29.23 -2.72 -0.08 1.10 16 7 C -0.15 -3.53 4.82 -19.71 -0.10 -3.62 16 8 C -0.07 -1.24 6.10 29.10 0.18 -1.06 16 9 C 0.52 13.79 7.79 87.66 0.68 14.47 16 10 O -0.58 -20.20 15.70 -3.04 -0.05 -20.24 16 11 N -0.70 -18.47 3.60 -442.42 -1.59 -20.06 16 12 C 0.17 5.23 2.21 45.02 0.10 5.33 16 13 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 14 C -0.14 -5.40 5.77 30.67 0.18 -5.22 16 15 C 0.19 8.52 5.05 86.36 0.44 8.96 16 16 N -0.61 -27.78 2.99 -699.14 -2.09 -29.88 16 17 C -0.26 -13.63 9.58 84.03 0.81 -12.82 16 18 H 0.07 3.29 7.88 -2.91 -0.02 3.27 16 19 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 20 N -0.93 -52.40 11.20 21.65 0.24 -52.16 16 21 Si 0.96 43.52 29.59 68.60 2.03 45.55 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.15 5.26 5.50 86.36 0.48 5.74 16 26 C -0.11 -3.07 2.67 -10.73 -0.03 -3.10 16 27 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 28 C -0.13 -2.80 9.05 71.98 0.65 -2.15 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 9.58 6.73 -92.71 -0.62 8.95 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.01 0.46 7.74 -2.39 -0.02 0.44 16 38 H 0.04 2.34 6.06 -2.38 -0.01 2.33 16 39 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 40 H 0.03 0.94 6.64 -2.39 -0.02 0.93 16 41 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 42 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.68 374.01 4.47 -62.20 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.41 Total: 15.28 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.40 Total: 5.72 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.04 Total: -112.95 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.75 Total: -16.90 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: 1.18 SS G_CDS: -0.08 Total: 1.10 kcal Total: -66.68 4.47 -62.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943547407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.499 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds