Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00592 * 2 1 4 4 H 1.48496 * 109.47515 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00249 * 3 2 1 6 6 H 1.48502 * 109.46939 * 59.99528 * 3 2 1 7 7 C 1.38815 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00514 * 188.97820 * 7 2 1 9 9 N 1.36939 * 120.00201 * 8.96796 * 7 2 1 10 10 C 1.48145 * 127.83377 * 16.51043 * 9 7 2 11 11 C 1.54390 * 104.61919 * 140.41022 * 10 9 7 12 12 H 1.08998 * 117.61884 * 242.76430 * 11 10 9 13 13 C 1.54149 * 106.22516 * 23.24974 * 11 10 9 14 14 H 1.09003 * 121.78927 * 221.54989 * 13 11 10 15 15 C 1.48137 * 127.84218 * 196.49974 * 9 7 2 16 16 C 1.52998 * 118.12475 * 87.18817 * 11 10 9 17 17 H 1.09008 * 117.44261 * 14.46565 * 16 11 10 18 18 N 1.46500 * 117.44540 * 159.21509 * 16 11 10 19 19 C 1.34776 * 119.99830 * 205.17068 * 18 16 11 20 20 O 1.21588 * 120.00158 * 359.97438 * 19 18 16 21 21 C 1.47588 * 119.99802 * 179.97438 * 19 18 16 22 22 C 1.38643 * 120.41515 * 354.58686 * 21 19 18 23 23 C 1.39256 * 120.71625 * 179.97438 * 22 21 19 24 24 F 1.35106 * 119.43216 * 180.02562 * 23 22 21 25 25 C 1.36556 * 121.13339 * 0.05461 * 23 22 21 26 26 C 1.40285 * 119.91815 * 359.69569 * 25 23 22 27 27 C 1.40715 * 122.08015 * 179.72811 * 26 25 23 28 28 C 1.36245 * 118.66780 * 180.29590 * 27 26 25 29 29 N 1.32521 * 121.83510 * 0.24903 * 28 27 26 30 30 C 1.31325 * 122.72434 * 0.02562 * 29 28 27 31 31 C 1.40108 * 119.92511 * 359.97438 * 30 29 28 32 32 H 0.96996 * 119.99251 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.41059 * 21.62493 * 10 9 7 34 34 H 1.08998 * 110.50541 * 259.24145 * 10 9 7 35 35 H 1.09002 * 110.40955 * 338.38092 * 15 9 7 36 36 H 1.09000 * 110.40679 * 100.80441 * 15 9 7 37 37 H 0.96993 * 120.00074 * 25.16500 * 18 16 11 38 38 H 1.07998 * 119.64448 * 0.03049 * 22 21 19 39 39 H 1.08001 * 120.03970 * 179.97438 * 25 23 22 40 40 H 1.07995 * 120.66603 * 0.57000 * 27 26 25 41 41 H 1.07999 * 119.08141 * 180.22767 * 28 27 26 42 42 H 1.08004 * 120.03484 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0803 -1.2082 0.1454 9 7 1.3380 -2.3808 -0.1859 10 6 -0.0286 -2.5724 -0.7246 11 6 0.0773 -3.8263 -1.6191 12 1 -0.1218 -3.7057 -2.6839 13 6 1.2947 -4.6202 -1.1054 14 1 2.0026 -5.0910 -1.7876 15 6 1.8126 -3.7533 0.1064 16 6 -0.1158 -5.1964 -0.9662 17 1 -0.5524 -5.2200 0.0324 18 7 -0.4772 -6.3157 -1.8396 19 6 -1.1393 -7.3764 -1.3366 20 8 -1.4364 -7.4045 -0.1579 21 6 -1.5039 -8.5037 -2.2167 22 6 -1.2700 -8.4329 -3.5814 23 6 -1.6109 -9.4931 -4.4174 24 9 -1.3709 -9.3966 -5.7435 25 6 -2.1843 -10.6283 -3.9201 26 6 -2.4327 -10.7416 -2.5441 27 6 -3.0263 -11.8879 -1.9837 28 6 -3.2414 -11.9214 -0.6388 29 7 -2.9121 -10.9066 0.1473 30 6 -2.3604 -9.8054 -0.3085 31 6 -2.0971 -9.6706 -1.6780 32 1 -0.4849 0.8401 -0.0004 33 1 -0.3287 -1.7077 -1.3164 34 1 -0.7379 -2.7423 0.0854 35 1 2.9017 -3.7796 0.1416 36 1 1.3924 -4.1084 1.0474 37 1 -0.2400 -6.2934 -2.7798 38 1 -0.8176 -7.5464 -4.0005 39 1 -2.4420 -11.4397 -4.5847 40 1 -3.3017 -12.7260 -2.6067 41 1 -3.6931 -12.7993 -0.2012 42 1 -2.1092 -9.0050 0.3717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959954818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = 50.509322 kcal Electronic energy + Delta-G solvation = -27944.956230 eV Core-core repulsion = 23806.773829 eV Total energy + Delta-G solvation = -4138.182401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.128 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -49.48011 -41.46119 -39.84429 -38.39632 -37.36467 -34.74326 -33.51454 -32.74314 -31.23770 -30.64725 -29.82328 -27.09042 -25.96841 -25.13279 -24.00664 -23.79638 -21.83355 -21.01275 -20.38050 -19.39626 -18.80084 -18.28680 -17.75290 -16.93085 -16.63034 -16.57597 -16.22907 -15.91930 -15.53159 -15.14905 -15.06079 -14.74987 -14.25229 -14.05582 -13.71727 -13.57327 -13.43376 -13.27805 -12.82382 -12.79532 -12.37029 -12.19137 -12.09227 -11.65350 -11.53990 -11.02254 -10.88450 -10.67248 -10.44919 -10.31880 -10.18478 -10.07035 -9.79411 -9.71271 -9.45545 -9.32025 -8.83299 -8.65532 -8.43172 -6.91518 -5.84805 -3.19498 -0.45468 0.29274 1.18254 2.13211 2.73070 2.85707 3.35274 3.41539 3.43979 3.51780 3.64614 3.92238 4.02838 4.22857 4.27483 4.30854 4.37744 4.41877 4.46272 4.73792 4.91330 5.04878 5.09097 5.21232 5.26838 5.31976 5.32281 5.41086 5.50551 5.61193 5.66053 5.70673 5.78521 5.97385 6.10094 6.12795 6.38253 6.43886 6.62814 6.63853 6.81747 7.25245 7.30372 7.47812 7.67046 7.68413 7.94879 8.15178 9.06056 9.68749 10.45260 11.29844 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.002194 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.080150 B =12757.596588 C =13654.618195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.185 3.815 11 C -0.178 4.178 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.108 0.892 15 C 0.157 3.843 16 C 0.089 3.911 17 H 0.137 0.863 18 N -0.684 5.684 19 C 0.562 3.438 20 O -0.521 6.521 21 C -0.059 4.059 22 C -0.118 4.118 23 C 0.119 3.881 24 F -0.131 7.131 25 C -0.129 4.129 26 C -0.004 4.004 27 C -0.167 4.167 28 C 0.090 3.910 29 N -0.489 5.489 30 C 0.156 3.844 31 C -0.093 4.093 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.028 0.972 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.399 0.601 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -23.934 -9.824 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.315 5.315 10 C 0.059 3.941 11 C -0.199 4.199 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.126 0.874 15 C 0.030 3.970 16 C -0.016 4.016 17 H 0.155 0.845 18 N -0.332 5.332 19 C 0.349 3.651 20 O -0.399 6.399 21 C -0.064 4.064 22 C -0.138 4.138 23 C 0.099 3.901 24 F -0.109 7.109 25 C -0.148 4.148 26 C -0.010 4.010 27 C -0.187 4.187 28 C -0.054 4.054 29 N -0.197 5.197 30 C -0.013 4.013 31 C -0.096 4.096 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.235 0.765 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.753 -23.846 -8.114 25.837 hybrid contribution 0.726 0.811 -2.095 2.360 sum -5.027 -23.035 -10.209 25.692 Atomic orbital electron populations 1.69906 1.05076 1.25438 1.55552 1.24927 0.95659 0.98063 1.01559 0.86035 0.78889 0.83438 0.77306 1.20330 1.21608 1.21623 1.19027 0.90808 0.82187 1.43595 0.90453 1.45116 1.14031 1.00124 1.72247 1.21060 0.87162 0.92112 0.93737 1.24645 1.02323 0.92425 1.00483 0.87986 1.25113 0.90253 1.01883 1.03155 0.87429 1.21719 0.97351 0.85601 0.92325 1.22024 0.99004 0.84743 0.95853 0.84521 1.45327 1.56605 1.18406 1.12823 1.17859 0.78268 0.81759 0.87215 1.90603 1.54256 1.78862 1.16183 1.19795 0.99382 0.94418 0.92780 1.21403 1.00720 0.99004 0.92689 1.17197 0.99846 0.95121 0.77974 1.91569 1.92135 1.96461 1.30747 1.21064 1.00703 0.97960 0.95076 1.17825 0.96729 0.93998 0.92431 1.21842 1.01836 0.97978 0.97035 1.22423 0.95572 0.96966 0.90407 1.67743 1.11117 1.00772 1.40041 1.24708 0.88677 0.95089 0.92863 1.18893 1.01141 0.93508 0.96087 0.93520 0.89181 0.95380 0.93019 0.94986 0.76526 0.83557 0.83350 0.84053 0.82679 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.28 10.91 55.49 0.61 -25.67 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.55 29.56 -169.99 -5.03 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.21 10.35 -15.06 -0.16 -6.36 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -14.71 3.38 -166.71 -0.56 -15.27 16 10 C 0.19 4.29 5.68 -2.41 -0.01 4.27 16 11 C -0.18 -3.12 6.97 -89.29 -0.62 -3.74 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.18 -3.02 7.34 -87.43 -0.64 -3.67 16 14 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.18 7.10 -0.55 0.00 3.18 16 16 C 0.09 1.37 5.93 -67.93 -0.40 0.97 16 17 H 0.14 2.39 7.40 -51.92 -0.38 2.00 16 18 N -0.68 -8.23 5.51 -54.83 -0.30 -8.53 16 19 C 0.56 7.18 7.74 -12.45 -0.10 7.08 16 20 O -0.52 -8.13 13.03 5.29 0.07 -8.06 16 21 C -0.06 -0.62 5.90 -104.67 -0.62 -1.24 16 22 C -0.12 -1.00 9.48 -39.05 -0.37 -1.37 16 23 C 0.12 0.98 7.23 -39.81 -0.29 0.69 16 24 F -0.13 -1.11 17.24 2.25 0.04 -1.07 16 25 C -0.13 -0.97 9.75 -39.42 -0.38 -1.35 16 26 C 0.00 -0.04 5.74 -106.84 -0.61 -0.65 16 27 C -0.17 -1.26 9.88 -39.36 -0.39 -1.65 16 28 C 0.09 0.80 11.07 -17.97 -0.20 0.60 16 29 N -0.49 -5.85 10.30 -13.22 -0.14 -5.99 16 30 C 0.16 1.93 10.49 -17.07 -0.18 1.76 16 31 C -0.09 -1.04 5.76 -106.58 -0.61 -1.65 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.09 2.33 6.58 -51.93 -0.34 1.99 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 3.65 6.89 -40.82 -0.28 3.37 16 38 H 0.15 0.92 6.41 -52.49 -0.34 0.58 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.20 2.75 4.96 -52.49 -0.26 2.49 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -31.62 356.33 -10.16 -41.78 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.53 Total: 4.29 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -5.68 Total: -3.36 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.40 Total: -55.47 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.06 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.62 -10.16 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959954818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.289 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds