Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00592 * 2 1 4 4 H 1.48496 * 109.47515 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00249 * 3 2 1 6 6 H 1.48502 * 109.46939 * 59.99528 * 3 2 1 7 7 C 1.38815 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00514 * 188.97820 * 7 2 1 9 9 N 1.36939 * 120.00201 * 8.96796 * 7 2 1 10 10 C 1.48145 * 127.83377 * 16.51043 * 9 7 2 11 11 C 1.54390 * 104.61919 * 140.41022 * 10 9 7 12 12 H 1.08998 * 117.61884 * 242.76430 * 11 10 9 13 13 C 1.54149 * 106.22516 * 23.24974 * 11 10 9 14 14 H 1.09003 * 121.78927 * 221.54989 * 13 11 10 15 15 C 1.48137 * 127.84218 * 196.49974 * 9 7 2 16 16 C 1.52998 * 118.12475 * 87.18817 * 11 10 9 17 17 H 1.09008 * 117.44261 * 14.46565 * 16 11 10 18 18 N 1.46500 * 117.44540 * 159.21509 * 16 11 10 19 19 C 1.34776 * 119.99830 * 205.17068 * 18 16 11 20 20 O 1.21588 * 120.00158 * 359.97438 * 19 18 16 21 21 C 1.47588 * 119.99802 * 179.97438 * 19 18 16 22 22 C 1.38643 * 120.41515 * 354.58686 * 21 19 18 23 23 C 1.39256 * 120.71625 * 179.97438 * 22 21 19 24 24 F 1.35106 * 119.43216 * 180.02562 * 23 22 21 25 25 C 1.36556 * 121.13339 * 0.05461 * 23 22 21 26 26 C 1.40285 * 119.91815 * 359.69569 * 25 23 22 27 27 C 1.40715 * 122.08015 * 179.72811 * 26 25 23 28 28 C 1.36245 * 118.66780 * 180.29590 * 27 26 25 29 29 N 1.32521 * 121.83510 * 0.24903 * 28 27 26 30 30 C 1.31325 * 122.72434 * 0.02562 * 29 28 27 31 31 C 1.40108 * 119.92511 * 359.97438 * 30 29 28 32 32 H 0.96996 * 119.99251 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.41059 * 21.62493 * 10 9 7 34 34 H 1.08998 * 110.50541 * 259.24145 * 10 9 7 35 35 H 1.09002 * 110.40955 * 338.38092 * 15 9 7 36 36 H 1.09000 * 110.40679 * 100.80441 * 15 9 7 37 37 H 0.96993 * 120.00074 * 25.16500 * 18 16 11 38 38 H 1.07998 * 119.64448 * 0.03049 * 22 21 19 39 39 H 1.08001 * 120.03970 * 179.97438 * 25 23 22 40 40 H 1.07995 * 120.66603 * 0.57000 * 27 26 25 41 41 H 1.07999 * 119.08141 * 180.22767 * 28 27 26 42 42 H 1.08004 * 120.03484 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0803 -1.2082 0.1454 9 7 1.3380 -2.3808 -0.1859 10 6 -0.0286 -2.5724 -0.7246 11 6 0.0773 -3.8263 -1.6191 12 1 -0.1218 -3.7057 -2.6839 13 6 1.2947 -4.6202 -1.1054 14 1 2.0026 -5.0910 -1.7876 15 6 1.8126 -3.7533 0.1064 16 6 -0.1158 -5.1964 -0.9662 17 1 -0.5524 -5.2200 0.0324 18 7 -0.4772 -6.3157 -1.8396 19 6 -1.1393 -7.3764 -1.3366 20 8 -1.4364 -7.4045 -0.1579 21 6 -1.5039 -8.5037 -2.2167 22 6 -1.2700 -8.4329 -3.5814 23 6 -1.6109 -9.4931 -4.4174 24 9 -1.3709 -9.3966 -5.7435 25 6 -2.1843 -10.6283 -3.9201 26 6 -2.4327 -10.7416 -2.5441 27 6 -3.0263 -11.8879 -1.9837 28 6 -3.2414 -11.9214 -0.6388 29 7 -2.9121 -10.9066 0.1473 30 6 -2.3604 -9.8054 -0.3085 31 6 -2.0971 -9.6706 -1.6780 32 1 -0.4849 0.8401 -0.0004 33 1 -0.3287 -1.7077 -1.3164 34 1 -0.7379 -2.7423 0.0854 35 1 2.9017 -3.7796 0.1416 36 1 1.3924 -4.1084 1.0474 37 1 -0.2400 -6.2934 -2.7798 38 1 -0.8176 -7.5464 -4.0005 39 1 -2.4420 -11.4397 -4.5847 40 1 -3.3017 -12.7260 -2.6067 41 1 -3.6931 -12.7993 -0.2012 42 1 -2.1092 -9.0050 0.3717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959954818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 31.123203 kcal Electronic energy + Delta-G solvation = -27945.796875 eV Core-core repulsion = 23806.773829 eV Total energy + Delta-G solvation = -4139.023046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.128 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -50.08829 -42.23939 -40.95029 -39.74764 -38.11345 -36.21051 -34.60765 -34.00551 -32.27631 -31.90963 -30.73916 -28.79901 -27.67874 -26.07682 -24.81482 -24.58988 -23.27165 -22.11069 -21.81074 -20.90812 -19.59273 -19.06786 -18.82627 -18.49163 -17.60059 -17.47344 -16.87665 -16.85194 -16.63464 -16.36061 -16.10983 -15.76281 -15.52711 -15.10423 -15.01774 -14.70661 -14.60124 -14.30361 -14.07608 -13.77277 -13.48027 -13.33228 -13.26530 -12.89986 -12.87698 -12.77262 -12.73284 -12.10689 -11.97752 -11.91151 -11.70574 -11.36244 -11.09232 -10.87063 -10.71862 -10.50274 -10.15370 -9.84294 -9.24317 -8.91912 -7.92822 -5.29618 -1.15969 -0.38262 0.44386 1.38304 1.47523 1.47602 1.59122 1.69945 1.98558 2.48008 2.82534 2.84229 2.94451 3.20500 3.29752 3.38454 3.54619 3.60505 3.62689 3.72533 3.78877 3.81576 3.93820 4.06909 4.16953 4.26851 4.31961 4.43132 4.51064 4.53962 4.70978 4.73476 4.76731 4.86220 4.99463 5.01259 5.05038 5.26589 5.37654 5.43879 5.46065 5.51391 5.64379 5.66387 6.16398 6.30519 6.92380 7.00070 7.02359 7.66813 8.45221 9.21532 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.002194 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.080150 B =12757.596588 C =13654.618195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.189 3.811 11 C -0.177 4.177 12 H 0.128 0.872 13 C -0.162 4.162 14 H 0.143 0.857 15 C 0.148 3.852 16 C 0.112 3.888 17 H 0.112 0.888 18 N -0.671 5.671 19 C 0.563 3.437 20 O -0.557 6.557 21 C -0.081 4.081 22 C -0.096 4.096 23 C 0.108 3.892 24 F -0.130 7.130 25 C -0.103 4.103 26 C -0.021 4.021 27 C -0.141 4.141 28 C 0.067 3.933 29 N -0.511 5.511 30 C 0.124 3.876 31 C -0.101 4.101 32 H 0.250 0.750 33 H 0.057 0.943 34 H -0.003 1.003 35 H 0.062 0.938 36 H 0.023 0.977 37 H 0.417 0.583 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -26.730 -12.970 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.063 3.937 11 C -0.198 4.198 12 H 0.146 0.854 13 C -0.183 4.183 14 H 0.160 0.840 15 C 0.022 3.978 16 C 0.006 3.994 17 H 0.130 0.870 18 N -0.321 5.321 19 C 0.352 3.648 20 O -0.437 6.437 21 C -0.087 4.087 22 C -0.115 4.115 23 C 0.087 3.913 24 F -0.108 7.108 25 C -0.122 4.122 26 C -0.026 4.026 27 C -0.160 4.160 28 C -0.076 4.076 29 N -0.220 5.220 30 C -0.045 4.045 31 C -0.104 4.104 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.015 0.985 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.256 0.744 38 H 0.187 0.813 39 H 0.201 0.799 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.102 -26.681 -11.290 29.417 hybrid contribution 0.469 1.509 -1.109 1.931 sum -4.633 -25.171 -12.399 28.439 Atomic orbital electron populations 1.70104 1.06578 1.25744 1.57098 1.25775 0.96495 1.01382 1.01999 0.84983 0.78340 0.79083 0.76718 1.18763 1.21622 1.22069 1.19414 0.91344 0.83400 1.42620 0.89949 1.45410 1.14496 1.01247 1.72876 1.20789 0.86153 0.93586 0.93209 1.24304 1.03964 0.90905 1.00663 0.85408 1.25008 0.90796 1.01081 1.01462 0.83954 1.21856 0.98046 0.84253 0.93666 1.21509 0.97993 0.84742 0.95196 0.86993 1.45054 1.56589 1.17172 1.13244 1.18243 0.77367 0.82135 0.87077 1.90616 1.55477 1.79589 1.18002 1.19441 1.02197 0.93771 0.93250 1.21614 0.98539 0.99757 0.91600 1.17209 1.00685 0.95410 0.77990 1.91582 1.92218 1.96471 1.30549 1.21406 0.97973 0.98331 0.94503 1.18076 0.97490 0.94018 0.93035 1.22301 0.98811 0.98148 0.96787 1.22926 0.96363 0.97042 0.91295 1.67636 1.11242 1.01413 1.41720 1.24335 0.91224 0.95339 0.93627 1.18964 1.01228 0.94489 0.95769 0.94090 0.92447 0.98478 0.91952 0.95891 0.74380 0.81337 0.79903 0.79804 0.79945 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.91 21.65 0.24 -56.56 16 2 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 3 Si 0.98 45.11 29.56 68.60 2.03 47.14 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.24 -13.26 10.35 84.03 0.87 -12.39 16 8 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 9 N -0.62 -31.46 3.38 -681.34 -2.30 -33.76 16 10 C 0.19 9.13 5.68 86.54 0.49 9.62 16 11 C -0.18 -6.16 6.97 -9.93 -0.07 -6.23 16 12 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 13 C -0.16 -5.15 7.34 -8.73 -0.06 -5.21 16 14 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 15 C 0.15 6.03 7.10 87.74 0.62 6.65 16 16 C 0.11 3.43 5.93 44.99 0.27 3.70 16 17 H 0.11 4.10 7.40 -2.38 -0.02 4.08 16 18 N -0.67 -15.21 5.51 -445.64 -2.46 -17.67 16 19 C 0.56 14.36 7.74 86.71 0.67 15.03 16 20 O -0.56 -18.42 13.03 -3.99 -0.05 -18.47 16 21 C -0.08 -1.63 5.90 -19.90 -0.12 -1.75 16 22 C -0.10 -1.33 9.48 22.61 0.21 -1.12 16 23 C 0.11 1.36 7.23 22.12 0.16 1.52 16 24 F -0.13 -1.69 17.24 44.97 0.78 -0.92 16 25 C -0.10 -1.10 9.75 22.37 0.22 -0.88 16 26 C -0.02 -0.32 5.74 -21.30 -0.12 -0.44 16 27 C -0.14 -1.63 9.88 22.41 0.22 -1.41 16 28 C 0.07 1.07 11.07 84.12 0.93 2.00 16 29 N -0.51 -12.47 10.30 -195.74 -2.02 -14.48 16 30 C 0.12 3.23 10.49 85.22 0.89 4.12 16 31 C -0.10 -2.19 5.76 -21.14 -0.12 -2.31 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.06 3.13 6.58 -2.39 -0.02 3.11 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 6.37 6.89 -92.71 -0.64 5.74 16 38 H 0.17 1.47 6.41 -2.91 -0.02 1.45 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.18 5.41 4.96 -2.95 -0.01 5.40 16 Total: -1.00 -73.97 356.33 2.19 -71.78 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.45 Total: 15.13 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.52 Total: 7.82 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.54 Total: -122.48 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.92 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.97 2.19 -71.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959954818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.906 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds