Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30206 * 126.78728 * 2 1 4 4 O 1.20916 * 111.64499 * 180.29319 * 3 2 1 5 5 C 1.34061 * 111.55233 * 359.70052 * 4 3 2 6 6 Cl 1.73602 * 126.79678 * 180.02562 * 5 4 3 7 7 C 1.35672 * 106.40794 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01541 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46782 * 90.02798 * 8 7 5 10 10 O 1.21273 * 120.00021 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00025 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00049 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.52235 * 35.08516 * 12 11 9 14 14 C 1.53184 * 109.49871 * 275.00509 * 12 11 9 15 15 N 1.46928 * 108.89534 * 294.75130 * 14 12 11 16 16 C 1.36938 * 120.62940 * 126.29555 * 15 14 12 17 17 H 1.08005 * 120.00173 * 331.84410 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83773 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48496 * 109.47191 * 90.00149 * 20 18 16 22 22 H 1.48501 * 109.46981 * 210.00196 * 20 18 16 23 23 H 1.48500 * 109.46794 * 329.99854 * 20 18 16 24 24 C 1.46926 * 118.73918 * 306.32538 * 15 14 12 25 25 C 1.53187 * 108.77400 * 53.60455 * 24 15 14 26 26 C 1.53035 * 109.31581 * 305.36470 * 25 24 15 27 27 H 1.09006 * 109.46024 * 301.34597 * 26 25 24 28 28 C 1.53000 * 109.46319 * 181.38935 * 26 25 24 29 29 H 1.09007 * 109.46879 * 270.19445 * 1 2 3 30 30 H 1.08994 * 109.47529 * 30.19910 * 1 2 3 31 31 H 1.09000 * 109.47202 * 150.19954 * 1 2 3 32 32 H 1.09002 * 109.47580 * 330.03211 * 8 7 5 33 33 H 1.08999 * 109.47301 * 210.03131 * 8 7 5 34 34 H 0.97002 * 119.99704 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.58839 * 174.89594 * 14 12 11 36 36 H 1.09003 * 109.58796 * 54.61516 * 14 12 11 37 37 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.58094 * 173.39220 * 24 15 14 39 39 H 1.09000 * 109.58537 * 293.67095 * 24 15 14 40 40 H 1.09006 * 109.49965 * 65.32155 * 25 24 15 41 41 H 1.08999 * 109.49865 * 185.37785 * 25 24 15 42 42 H 1.09000 * 109.47364 * 59.99659 * 28 26 25 43 43 H 1.09003 * 109.47208 * 179.97438 * 28 26 25 44 44 H 1.09001 * 109.46862 * 299.99785 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4539 0.7269 -0.0058 5 6 3.6036 -0.6053 -0.0039 6 17 5.1012 -1.4834 -0.0098 7 6 2.3531 -1.1315 0.0034 8 6 1.9581 -2.5857 0.0076 9 6 1.8331 -3.0681 1.4299 10 8 2.0436 -2.3059 2.3494 11 7 1.4865 -4.3463 1.6800 12 6 1.3655 -4.8154 3.0626 13 1 0.9753 -4.0117 3.6871 14 6 2.7427 -5.2422 3.5800 15 7 3.1994 -6.4081 2.8114 16 6 4.4202 -6.4002 2.1911 17 1 4.8532 -5.4668 1.8629 18 6 5.1014 -7.5919 1.9843 19 7 4.7599 -8.6704 2.6570 20 14 6.5027 -7.6649 0.7512 21 1 7.7808 -7.3413 1.4346 22 1 6.5825 -9.0303 0.1728 23 1 6.2587 -6.6811 -0.3341 24 6 2.3211 -7.5824 2.7203 25 6 0.9479 -7.1327 2.2116 26 6 0.4144 -6.0172 3.1133 27 1 0.3443 -6.3812 4.1384 28 6 -0.9723 -5.5893 2.6288 29 1 -0.3633 0.0035 1.0277 30 1 -0.3634 0.8881 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 2.7193 -3.1706 -0.5088 33 1 1.0016 -2.7040 -0.5015 34 1 1.3177 -4.9558 0.9445 35 1 2.6711 -5.5056 4.6354 36 1 3.4501 -4.4223 3.4553 37 1 5.2356 -9.5032 2.5122 38 1 2.7490 -8.3058 2.0263 39 1 2.2171 -8.0381 3.7050 40 1 1.0416 -6.7619 1.1908 41 1 0.2587 -7.9769 2.2300 42 1 -1.6497 -6.4424 2.6666 43 1 -1.3526 -4.7951 3.2712 44 1 -0.9027 -5.2258 1.6035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968417893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = 18.471830 kcal Electronic energy + Delta-G solvation = -28740.983431 eV Core-core repulsion = 24722.439236 eV Total energy + Delta-G solvation = -4018.544195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.12861 -41.09193 -39.16478 -38.27210 -36.40418 -35.90839 -34.11893 -33.45067 -32.94294 -31.15347 -29.91638 -29.42475 -28.64924 -25.79839 -24.13317 -23.27725 -22.71037 -22.52932 -21.51080 -20.22717 -19.05562 -18.81703 -18.59838 -17.92688 -17.01647 -16.73450 -16.42614 -16.04147 -15.63898 -15.26809 -15.10690 -14.77135 -14.65062 -14.44682 -14.27783 -14.14567 -14.01329 -13.65037 -13.49516 -13.42967 -13.21678 -13.08282 -12.96836 -12.87696 -12.70180 -12.58961 -12.35629 -12.15055 -11.96394 -11.87981 -11.58886 -11.24114 -11.15058 -11.04369 -10.80731 -10.52478 -10.26794 -9.90776 -8.59431 -7.84494 -5.28714 -0.03539 0.12512 0.98072 1.44800 1.47510 1.55350 1.76519 2.37131 2.51482 2.56674 3.01402 3.30249 3.47353 3.70992 3.75314 3.79147 3.87721 4.07204 4.11796 4.16683 4.44228 4.52647 4.57484 4.65265 4.68906 4.71267 4.79676 4.81893 4.83925 4.87780 5.06265 5.07313 5.13561 5.18254 5.28836 5.32984 5.52404 5.57103 5.68557 5.72072 5.83667 6.41791 6.73683 6.94458 7.19145 7.40742 7.89429 8.41075 9.20767 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.004514 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.904573 B = 6201.904656 C = 8295.989938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.373 5.373 4 O 0.090 5.910 5 C 0.001 3.999 6 Cl 0.053 6.947 7 C -0.151 4.151 8 C -0.064 4.064 9 C 0.516 3.484 10 O -0.583 6.583 11 N -0.691 5.691 12 C 0.150 3.850 13 H 0.078 0.922 14 C 0.134 3.866 15 N -0.596 5.596 16 C -0.248 4.248 17 H 0.055 0.945 18 C -0.044 4.044 19 N -0.932 5.932 20 Si 0.954 3.046 21 H -0.294 1.294 22 H -0.291 1.291 23 H -0.267 1.267 24 C 0.174 3.826 25 C -0.121 4.121 26 C -0.086 4.086 27 H 0.071 0.929 28 C -0.134 4.134 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.409 0.591 35 H 0.013 0.987 36 H 0.032 0.968 37 H 0.249 0.751 38 H 0.056 0.944 39 H -0.009 1.009 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 10.912 -8.885 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 N -0.084 5.084 4 O 0.028 5.972 5 C -0.089 4.089 6 Cl 0.081 6.919 7 C -0.156 4.156 8 C -0.104 4.104 9 C 0.303 3.697 10 O -0.463 6.463 11 N -0.342 5.342 12 C 0.043 3.957 13 H 0.096 0.904 14 C 0.008 3.992 15 N -0.319 5.319 16 C -0.378 4.378 17 H 0.072 0.928 18 C -0.239 4.239 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.221 1.221 22 H -0.217 1.217 23 H -0.192 1.192 24 C 0.048 3.952 25 C -0.160 4.160 26 C -0.105 4.105 27 H 0.089 0.911 28 C -0.191 4.191 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.172 0.828 34 H 0.246 0.754 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.965 12.516 -8.240 19.815 hybrid contribution 1.831 -1.458 -0.236 2.352 sum -11.134 11.058 -8.476 17.835 Atomic orbital electron populations 1.20426 0.82640 1.05871 1.04475 1.23850 1.00606 0.87054 0.99715 1.73884 0.88706 1.23925 1.21850 1.84853 1.22450 1.20959 1.68963 1.24805 0.91748 0.84920 1.07449 1.98485 1.28244 1.68575 1.96591 1.20391 0.89773 0.97753 1.07722 1.20087 1.07367 0.88450 0.94505 1.20677 0.75791 0.81936 0.91338 1.90683 1.51558 1.56297 1.47808 1.45763 1.68854 1.10679 1.08928 1.21292 0.95296 0.95928 0.83193 0.90390 1.21328 0.95021 0.89769 0.93132 1.44148 1.16127 1.13546 1.58129 1.19276 0.95944 0.92769 1.29834 0.92765 1.25630 1.00096 0.96947 1.01246 1.70168 1.44145 1.01251 1.42289 0.85487 0.79598 0.76876 0.79786 1.22129 1.21678 1.19176 1.20665 0.88682 0.88847 0.96977 1.22053 0.96806 0.98145 0.99026 1.21301 0.94973 0.93877 1.00390 0.91063 1.21750 0.94280 1.01468 1.01602 0.89636 0.89002 0.87014 0.86330 0.82842 0.75400 0.96949 0.94912 0.94219 0.92604 0.99130 0.91738 0.90724 0.91458 0.92605 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.39 71.24 0.74 -0.39 16 2 C 0.05 1.10 7.32 43.55 0.32 1.42 16 3 N -0.37 -10.44 12.07 -49.45 -0.60 -11.04 16 4 O 0.09 2.60 11.20 71.44 0.80 3.40 16 5 C 0.00 0.02 8.12 67.23 0.55 0.57 16 6 Cl 0.05 1.43 29.23 -2.72 -0.08 1.35 16 7 C -0.15 -3.75 4.82 -19.71 -0.10 -3.84 16 8 C -0.06 -1.32 6.10 29.10 0.18 -1.15 16 9 C 0.52 14.72 7.79 87.66 0.68 15.40 16 10 O -0.58 -21.63 15.70 -3.01 -0.05 -21.68 16 11 N -0.69 -18.95 4.26 -441.69 -1.88 -20.83 16 12 C 0.15 4.70 2.26 45.17 0.10 4.80 16 13 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 14 C 0.13 5.64 6.10 86.36 0.53 6.17 16 15 N -0.60 -28.08 2.91 -699.10 -2.04 -30.12 16 16 C -0.25 -13.11 9.58 84.03 0.81 -12.30 16 17 H 0.05 2.91 7.89 -2.91 -0.02 2.89 16 18 C -0.04 -2.36 4.92 84.86 0.42 -1.94 16 19 N -0.93 -53.41 11.20 21.65 0.24 -53.17 16 20 Si 0.95 43.66 29.59 68.60 2.03 45.69 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.17 7.61 5.30 86.36 0.46 8.07 16 25 C -0.12 -3.68 5.20 30.67 0.16 -3.52 16 26 C -0.09 -2.30 2.48 -10.66 -0.03 -2.33 16 27 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 28 C -0.13 -2.53 9.05 71.98 0.65 -1.88 16 29 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.98 7.65 -2.39 -0.02 0.96 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.15 1.75 7.65 -2.39 -0.02 1.73 16 34 H 0.41 9.71 6.64 -92.71 -0.62 9.09 16 35 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.03 1.51 7.93 -2.39 -0.02 1.49 16 37 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.06 2.81 6.06 -2.39 -0.01 2.79 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 40 H 0.06 1.81 6.41 -2.38 -0.02 1.80 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.07 7.55 -2.39 -0.02 1.06 16 Total: -1.00 -69.73 373.86 4.31 -65.43 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.42 Total: 11.90 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.46 Total: 9.07 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.27 Total: -115.16 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.75 Total: -18.28 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: 1.43 SS G_CDS: -0.08 Total: 1.35 kcal Total: -69.73 4.31 -65.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968417893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.899 kcal (2) G-P(sol) polarization free energy of solvation -69.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds