Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30208 * 126.79008 * 2 1 4 4 O 1.20919 * 111.64444 * 179.97438 * 3 2 1 5 5 C 1.34070 * 111.55387 * 359.76326 * 4 3 2 6 6 Cl 1.73595 * 126.79817 * 180.25768 * 5 4 3 7 7 C 1.35679 * 106.40199 * 0.37737 * 5 4 3 8 8 C 1.50701 * 128.01051 * 179.91014 * 7 5 4 9 9 C 1.52990 * 109.47319 * 269.68133 * 8 7 5 10 10 C 1.50699 * 109.47401 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00110 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00563 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64508 * 0.03376 * 12 10 9 14 14 C 1.54316 * 107.27118 * 181.02621 * 13 12 10 15 15 C 1.55161 * 102.94110 * 22.19563 * 14 13 12 16 16 H 1.09002 * 111.03323 * 82.58810 * 15 14 13 17 17 N 1.46502 * 111.00264 * 206.42255 * 15 14 13 18 18 C 1.46500 * 120.00032 * 52.19472 * 17 15 14 19 19 C 1.36937 * 119.99895 * 232.19470 * 17 15 14 20 20 H 1.07997 * 120.00237 * 339.56205 * 19 17 15 21 21 C 1.38815 * 119.99793 * 159.27919 * 19 17 15 22 22 N 1.31615 * 119.99985 * 345.41888 * 21 19 17 23 23 Si 1.86803 * 119.99768 * 165.41406 * 21 19 17 24 24 H 1.48498 * 109.47099 * 94.71272 * 23 21 19 25 25 H 1.48499 * 109.46954 * 214.71175 * 23 21 19 26 26 H 1.48503 * 109.46884 * 334.70972 * 23 21 19 27 27 C 1.47419 * 125.65315 * 179.97438 * 12 10 9 28 28 H 1.08995 * 109.47462 * 270.03029 * 1 2 3 29 29 H 1.09008 * 109.46571 * 30.02384 * 1 2 3 30 30 H 1.08999 * 109.47377 * 150.02262 * 1 2 3 31 31 H 1.09004 * 109.46968 * 149.67801 * 8 7 5 32 32 H 1.09005 * 109.47129 * 29.68474 * 8 7 5 33 33 H 1.09004 * 109.47371 * 59.99915 * 9 8 7 34 34 H 1.09005 * 109.47298 * 300.00238 * 9 8 7 35 35 H 1.08998 * 109.88228 * 300.44608 * 13 12 10 36 36 H 1.09000 * 109.88239 * 61.45403 * 13 12 10 37 37 H 1.08997 * 110.72173 * 263.82976 * 14 13 12 38 38 H 1.09001 * 110.72132 * 140.55564 * 14 13 12 39 39 H 1.08995 * 109.47182 * 264.86625 * 18 17 15 40 40 H 1.08996 * 109.46834 * 24.87141 * 18 17 15 41 41 H 1.09000 * 109.47156 * 144.86844 * 18 17 15 42 42 H 0.97008 * 119.99788 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36399 * 37.06579 * 27 12 10 44 44 H 1.08997 * 110.46127 * 274.79378 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6037 -0.6055 0.0061 6 17 5.1011 -1.4837 0.0150 7 6 2.3530 -1.1315 0.0006 8 6 1.9579 -2.5858 0.0016 9 6 1.8240 -3.0789 -1.4405 10 6 1.4282 -4.5330 -1.4395 11 8 1.2695 -5.1176 -0.3888 12 7 1.2518 -5.1842 -2.6063 13 6 1.4122 -4.6005 -3.9461 14 6 1.0840 -5.7072 -4.9703 15 6 0.2089 -6.6914 -4.1499 16 1 -0.8284 -6.3583 -4.1168 17 7 0.3040 -8.0512 -4.6869 18 6 1.6172 -8.6649 -4.8990 19 6 -0.8348 -8.7486 -4.9905 20 1 -1.7774 -8.4623 -4.5480 21 6 -0.7784 -9.8197 -5.8716 22 7 0.2829 -9.9925 -6.6306 23 14 -2.2090 -11.0161 -5.9799 24 1 -3.1147 -10.6062 -7.0830 25 1 -1.6923 -12.3827 -6.2457 26 1 -2.9571 -11.0106 -4.6971 27 6 0.8671 -6.6000 -2.7504 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.0038 -2.7028 0.5157 32 1 2.7216 -3.1695 0.5157 33 1 2.7780 -2.9619 -1.9546 34 1 1.0603 -2.4952 -1.9546 35 1 0.7244 -3.7642 -4.0709 36 1 2.4386 -4.2595 -4.0815 37 1 1.9951 -6.1963 -5.3148 38 1 0.5220 -5.3003 -5.8110 39 1 1.9248 -8.5162 -5.9340 40 1 2.3460 -8.2026 -4.2333 41 1 1.5578 -9.7325 -4.6874 42 1 0.3223 -10.7413 -7.2460 43 1 0.1525 -6.8797 -1.9763 44 1 1.7475 -7.2409 -2.7024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980524106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = 29.563452 kcal Electronic energy + Delta-G solvation = -27130.003004 eV Core-core repulsion = 23111.939778 eV Total energy + Delta-G solvation = -4018.063227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = -0.17 seconds Orbital eigenvalues (eV) -46.15194 -41.09229 -39.00612 -38.27709 -36.88486 -36.51969 -34.22692 -33.44726 -31.85745 -31.12969 -29.74865 -29.39303 -28.06298 -26.63045 -24.80830 -23.70718 -22.60981 -22.30499 -20.93054 -20.07313 -18.96571 -18.94589 -18.78764 -18.04770 -17.55804 -16.83356 -16.46251 -16.15969 -15.90966 -15.16316 -15.10859 -14.66737 -14.39914 -14.29314 -14.22682 -14.17510 -13.92129 -13.80962 -13.55632 -13.44896 -13.33652 -13.20666 -12.93589 -12.86584 -12.80571 -12.45559 -12.39919 -12.26434 -12.11848 -12.09548 -11.82412 -11.80011 -11.41840 -11.04851 -10.88010 -10.63458 -10.28317 -9.62660 -8.80698 -7.83901 -5.30004 0.01138 0.09619 0.97050 1.46997 1.49538 1.58462 1.65276 1.99852 2.50764 2.53671 2.99359 3.28261 3.43649 3.54672 3.58555 3.74384 3.95003 3.98458 4.03687 4.18761 4.26296 4.29529 4.38172 4.47184 4.50494 4.66993 4.68840 4.75127 4.79261 4.81711 4.92368 4.95660 5.03879 5.06262 5.21577 5.24342 5.26981 5.32430 5.45258 5.64119 5.72339 6.30814 6.61110 6.97017 7.13334 7.17356 7.85177 8.27858 9.19362 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.002123 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.723841 B =13184.662950 C =13663.370721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 N -0.371 5.371 4 O 0.097 5.903 5 C -0.001 4.001 6 Cl 0.060 6.940 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.120 4.120 10 C 0.524 3.476 11 O -0.587 6.587 12 N -0.614 5.614 13 C 0.109 3.891 14 C -0.143 4.143 15 C 0.165 3.835 16 H 0.074 0.926 17 N -0.603 5.603 18 C 0.179 3.821 19 C -0.266 4.266 20 H 0.072 0.928 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.272 1.272 27 C 0.097 3.903 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.011 0.989 40 H 0.028 0.972 41 H 0.013 0.987 42 H 0.248 0.752 43 H 0.053 0.947 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 22.207 11.119 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.080 5.080 4 O 0.032 5.968 5 C -0.091 4.091 6 Cl 0.088 6.912 7 C -0.168 4.168 8 C -0.063 4.063 9 C -0.159 4.159 10 C 0.315 3.685 11 O -0.468 6.468 12 N -0.347 5.347 13 C -0.013 4.013 14 C -0.183 4.183 15 C 0.057 3.943 16 H 0.093 0.907 17 N -0.324 5.324 18 C 0.034 3.966 19 C -0.396 4.396 20 H 0.090 0.910 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.197 1.197 27 C -0.028 4.028 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.871 23.035 11.606 26.453 hybrid contribution -0.219 -2.034 -0.332 2.072 sum 5.652 21.001 11.274 24.497 Atomic orbital electron populations 1.20427 0.83210 1.05332 1.04938 1.23832 1.00383 0.87286 1.00539 1.73963 0.88837 1.23860 1.21297 1.84898 1.22178 1.21165 1.68512 1.24797 0.91698 0.84771 1.07832 1.98477 1.27646 1.68497 1.96586 1.20863 0.89703 0.98181 1.08036 1.19630 1.04059 0.86261 0.96309 1.21599 1.05472 0.90070 0.98780 1.20877 0.76250 0.89888 0.81506 1.90693 1.53800 1.70393 1.31931 1.48571 1.67711 1.11550 1.06906 1.22187 1.03080 0.96399 0.79666 1.23058 1.00687 0.96308 0.98237 1.21550 0.97776 0.84621 0.90402 0.90732 1.44003 1.02912 1.11650 1.73859 1.20490 0.84682 0.94887 0.96513 1.19540 0.88922 1.10779 1.20319 0.91035 1.25684 0.99963 1.02200 0.96673 1.70231 1.30878 1.31346 1.25648 0.85279 0.79077 0.78316 0.77887 1.21098 1.22116 1.19744 1.22594 0.98813 0.82170 0.99263 0.88620 0.89431 0.88104 0.88771 0.90029 0.87104 0.86129 0.88571 0.89201 0.91741 0.89796 0.97070 0.95360 0.96823 0.94233 0.92842 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.39 71.24 0.74 -0.07 16 2 C 0.04 0.61 7.32 43.55 0.32 0.93 16 3 N -0.37 -7.35 12.07 -49.45 -0.60 -7.95 16 4 O 0.10 1.86 11.20 71.35 0.80 2.66 16 5 C 0.00 -0.02 8.12 67.23 0.55 0.53 16 6 Cl 0.06 0.85 29.23 -2.72 -0.08 0.78 16 7 C -0.16 -2.57 5.58 -19.71 -0.11 -2.68 16 8 C -0.02 -0.39 4.90 29.85 0.15 -0.25 16 9 C -0.12 -1.86 4.87 29.84 0.15 -1.71 16 10 C 0.52 13.40 7.85 87.66 0.69 14.09 16 11 O -0.59 -19.94 16.24 -3.03 -0.05 -19.98 16 12 N -0.61 -16.42 3.33 -811.78 -2.70 -19.12 16 13 C 0.11 2.24 6.49 86.73 0.56 2.80 16 14 C -0.14 -4.16 6.50 31.78 0.21 -3.96 16 15 C 0.17 6.15 3.54 46.39 0.16 6.31 16 16 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 17 N -0.60 -28.77 2.96 -694.99 -2.06 -30.83 16 18 C 0.18 8.53 7.56 127.77 0.97 9.50 16 19 C -0.27 -14.12 9.63 84.03 0.81 -13.31 16 20 H 0.07 3.70 7.86 -2.91 -0.02 3.67 16 21 C -0.05 -2.72 5.07 84.86 0.43 -2.29 16 22 N -0.93 -53.78 10.66 21.65 0.23 -53.55 16 23 Si 0.97 44.22 29.58 68.60 2.03 46.25 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.10 3.37 6.47 86.86 0.56 3.93 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.52 8.10 -2.38 -0.02 1.50 16 32 H 0.08 1.49 8.10 -2.38 -0.02 1.47 16 33 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 2.06 6.99 -2.39 -0.02 2.04 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.01 0.57 7.39 -2.39 -0.02 0.55 16 40 H 0.03 1.16 6.38 -2.39 -0.02 1.14 16 41 H 0.01 0.70 7.23 -2.39 -0.02 0.68 16 42 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 43 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 44 H 0.05 1.98 6.42 -2.39 -0.02 1.96 16 Total: -1.00 -67.92 378.77 4.76 -63.16 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.01 Total: 4.76 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.17 Total: 13.81 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -5.12 Total: -111.44 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.75 Total: -17.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: 0.85 SS G_CDS: -0.08 Total: 0.78 kcal Total: -67.92 4.76 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980524106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.724 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds