Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30218 * 126.78836 * 2 1 4 4 O 1.20916 * 111.64557 * 180.25864 * 3 2 1 5 5 C 1.34065 * 111.55473 * 359.73292 * 4 3 2 6 6 Cl 1.73594 * 126.80036 * 179.97438 * 5 4 3 7 7 C 1.35684 * 106.40364 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.01106 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46757 * 90.02505 * 8 7 5 10 10 O 1.21278 * 120.00163 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99804 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.47397 * 34.99792 * 12 11 9 14 14 C 1.53000 * 109.46840 * 274.99457 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 19 19 N 1.46500 * 109.47094 * 179.97438 * 17 16 15 20 20 C 1.36943 * 120.00134 * 84.99505 * 19 17 16 21 21 H 1.08007 * 119.99758 * 0.02562 * 20 19 17 22 22 C 1.38802 * 120.00199 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00190 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00051 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47500 * 89.99631 * 24 22 20 26 26 H 1.48500 * 109.46957 * 209.99741 * 24 22 20 27 27 H 1.48499 * 109.46983 * 329.99436 * 24 22 20 28 28 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 29 29 H 1.08999 * 109.47011 * 270.18314 * 1 2 3 30 30 H 1.08996 * 109.47236 * 30.18081 * 1 2 3 31 31 H 1.09000 * 109.47002 * 150.18086 * 1 2 3 32 32 H 1.08993 * 109.47151 * 330.02658 * 8 7 5 33 33 H 1.09002 * 109.47064 * 210.01916 * 8 7 5 34 34 H 0.97002 * 119.99716 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 36 36 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 37 37 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 39 39 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 41 41 H 0.97004 * 120.00223 * 264.99822 * 19 17 16 42 42 H 0.96997 * 120.00077 * 179.97438 * 23 22 20 43 43 H 1.08993 * 109.47194 * 179.97438 * 28 17 16 44 44 H 1.09002 * 109.46695 * 59.99734 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7270 -0.0051 5 6 3.6037 -0.6053 -0.0034 6 17 5.1012 -1.4834 -0.0097 7 6 2.3531 -1.1314 0.0042 8 6 1.9581 -2.5857 0.0084 9 6 1.8336 -3.0682 1.4307 10 8 2.0453 -2.3063 2.3503 11 7 1.4881 -4.3468 1.6807 12 6 1.3676 -4.8160 3.0633 13 1 0.9781 -4.0117 3.6873 14 6 2.7438 -5.2411 3.5793 15 6 2.6179 -5.7317 5.0230 16 6 1.6627 -6.9258 5.0744 17 6 0.2865 -6.5007 4.5583 18 1 -0.1032 -5.6966 5.1827 19 7 -0.6279 -7.6442 4.6070 20 6 -1.2978 -7.9365 5.7651 21 1 -1.1523 -7.3236 6.6425 22 6 -2.1646 -9.0196 5.8111 23 7 -2.8081 -9.3008 6.9244 24 14 -2.4168 -10.0791 4.2935 25 1 -1.4284 -11.1873 4.2935 26 1 -3.7911 -10.6417 4.3054 27 1 -2.2317 -9.2507 3.0751 28 6 0.4124 -6.0101 3.1146 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8916 -0.5110 32 1 2.7191 -3.1704 -0.5083 33 1 1.0014 -2.7038 -0.5004 34 1 1.3191 -4.9562 0.9452 35 1 3.1333 -6.0455 2.9552 36 1 3.4244 -4.3905 3.5423 37 1 3.5983 -6.0342 5.3908 38 1 2.2282 -4.9277 5.6473 39 1 1.5727 -7.2751 6.1030 40 1 2.0524 -7.7299 4.4501 41 1 -0.7589 -8.1945 3.8190 42 1 -3.4141 -10.0575 6.9564 43 1 -0.5681 -5.7077 2.7469 44 1 0.8021 -6.8142 2.4904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981382418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -3.276160 kcal Electronic energy + Delta-G solvation = -27256.731133 eV Core-core repulsion = 23237.243874 eV Total energy + Delta-G solvation = -4019.487259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.15310 -41.07399 -39.37490 -38.27876 -36.56092 -36.16370 -34.80657 -33.54145 -33.22207 -31.15355 -30.17967 -29.74904 -28.92425 -25.41384 -24.00032 -23.18168 -22.60902 -22.30703 -21.36003 -20.93081 -19.59766 -19.01882 -18.83647 -17.87177 -17.46232 -16.74107 -16.42999 -16.03205 -15.94250 -15.38313 -15.14750 -14.89024 -14.70306 -14.69372 -14.50429 -14.29863 -14.12200 -13.77209 -13.65721 -13.48851 -13.43551 -13.11543 -13.00878 -12.89867 -12.79536 -12.36940 -12.15099 -11.97097 -11.96384 -11.79590 -11.67074 -11.49619 -11.42261 -11.15526 -10.89713 -10.81321 -10.27872 -10.00809 -9.28893 -7.99384 -5.33352 -0.03895 0.12871 0.95605 1.39870 1.45210 1.52492 1.67253 2.21568 2.51878 2.52213 2.99156 3.31923 3.46881 3.48586 3.73370 3.75414 3.87796 3.96305 4.05597 4.22326 4.30148 4.40608 4.42612 4.53941 4.57815 4.58847 4.62017 4.67506 4.69876 4.76750 4.78088 5.00539 5.13920 5.16101 5.18108 5.22155 5.37075 5.50777 5.51984 5.64685 5.80635 6.24501 6.62994 6.96574 7.11400 7.32440 7.86536 8.07490 9.22458 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.002312 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.302674 B =12106.155160 C =12745.253989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.039 3.961 3 N -0.376 5.376 4 O 0.093 5.907 5 C 0.004 3.996 6 Cl 0.062 6.938 7 C -0.154 4.154 8 C -0.063 4.063 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.709 5.709 12 C 0.159 3.841 13 H 0.063 0.937 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.179 3.821 18 H 0.031 0.969 19 N -0.749 5.749 20 C -0.228 4.228 21 H 0.050 0.950 22 C -0.070 4.070 23 N -0.988 5.988 24 Si 0.960 3.040 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.243 1.243 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.419 0.581 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.368 0.632 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.476 14.469 -23.599 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 N -0.086 5.086 4 O 0.029 5.971 5 C -0.086 4.086 6 Cl 0.091 6.909 7 C -0.159 4.159 8 C -0.102 4.102 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.361 5.361 12 C 0.053 3.947 13 H 0.081 0.919 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.168 4.168 17 C 0.071 3.929 18 H 0.050 0.950 19 N -0.392 5.392 20 C -0.359 4.359 21 H 0.068 0.932 22 C -0.261 4.261 23 N -0.639 5.639 24 Si 0.787 3.213 25 H -0.205 1.205 26 H -0.227 1.227 27 H -0.167 1.167 28 C -0.157 4.157 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.256 0.744 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.201 0.799 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.483 16.277 -22.744 31.496 hybrid contribution -0.297 -1.762 -0.024 1.787 sum 14.186 14.515 -22.768 30.501 Atomic orbital electron populations 1.20403 0.83320 1.05805 1.04197 1.23832 1.00409 0.87601 1.00101 1.73926 0.88869 1.24064 1.21732 1.84864 1.22215 1.21367 1.68635 1.24809 0.91831 0.84821 1.07148 1.98458 1.27497 1.68412 1.96571 1.20413 0.89618 0.97890 1.08003 1.20141 1.07926 0.88209 0.93963 1.20850 0.75695 0.81713 0.91567 1.90745 1.50965 1.56005 1.47985 1.45878 1.70001 1.11417 1.08761 1.20675 0.95457 0.95542 0.82980 0.91892 1.21805 0.96335 1.01011 0.96232 1.21411 0.99454 0.97165 0.96728 1.22086 0.96151 0.98118 1.00465 1.20278 0.89092 0.88366 0.95161 0.95043 1.42712 1.51906 1.33774 1.10807 1.18987 1.17432 1.09036 0.90472 0.93235 1.25582 0.99495 1.00629 1.00367 1.69908 1.33679 1.31752 1.28559 0.85331 0.76585 0.79015 0.80354 1.20542 1.22731 1.16674 1.21921 0.99576 0.97501 0.96660 0.90141 0.89337 0.86963 0.84322 0.83198 0.74360 0.89982 0.92336 0.90809 0.93184 0.94758 0.91572 0.79863 0.93462 0.91087 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.39 71.24 0.74 -0.25 16 2 C 0.04 0.74 7.32 43.55 0.32 1.06 16 3 N -0.38 -8.82 12.07 -49.43 -0.60 -9.42 16 4 O 0.09 2.09 11.20 71.41 0.80 2.89 16 5 C 0.00 0.08 8.12 67.23 0.55 0.62 16 6 Cl 0.06 0.91 29.23 -2.72 -0.08 0.83 16 7 C -0.15 -2.60 4.82 -19.71 -0.10 -2.69 16 8 C -0.06 -0.63 6.10 29.10 0.18 -0.45 16 9 C 0.51 9.20 7.79 87.66 0.68 9.88 16 10 O -0.58 -16.42 15.70 -3.02 -0.05 -16.46 16 11 N -0.71 -10.58 5.08 -442.53 -2.25 -12.83 16 12 C 0.16 3.49 2.46 44.99 0.11 3.60 16 13 H 0.06 1.77 7.58 -2.39 -0.02 1.75 16 14 C -0.12 -2.48 5.49 30.59 0.17 -2.31 16 15 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 16 C -0.13 -4.09 5.50 30.60 0.17 -3.93 16 17 C 0.18 6.29 2.77 44.99 0.12 6.42 16 18 H 0.03 1.25 8.08 -2.39 -0.02 1.24 16 19 N -0.75 -32.92 4.92 -322.93 -1.59 -34.51 16 20 C -0.23 -12.78 10.41 84.03 0.87 -11.90 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 23 N -0.99 -63.24 13.97 21.65 0.30 -62.94 16 24 Si 0.96 43.84 27.74 68.60 1.90 45.75 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.24 -9.56 6.52 99.48 0.65 -8.92 16 28 C -0.12 -2.88 4.86 30.59 0.15 -2.73 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.71 7.65 -2.39 -0.02 0.69 16 32 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.15 0.46 7.65 -2.39 -0.02 0.44 16 34 H 0.42 3.18 8.60 -92.71 -0.80 2.38 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.37 15.02 5.66 -92.71 -0.52 14.49 16 42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.15 379.23 2.72 -75.43 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.34 Total: 20.14 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.61 Total: -8.87 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -4.13 Total: -119.70 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.75 Total: -13.57 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.75 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -78.15 2.72 -75.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981382418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.158 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds