Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30216 * 126.79195 * 2 1 4 4 O 1.20916 * 111.64670 * 180.28946 * 3 2 1 5 5 C 1.34066 * 111.55181 * 359.69553 * 4 3 2 6 6 Cl 1.73599 * 126.79705 * 180.02562 * 5 4 3 7 7 C 1.35672 * 106.40949 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01930 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47027 * 90.01872 * 8 7 5 10 10 C 1.50698 * 109.46991 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00407 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00124 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64650 * 359.97306 * 12 10 9 14 14 C 1.54907 * 104.82951 * 155.91652 * 13 12 10 15 15 C 1.55159 * 101.58574 * 37.01073 * 14 13 12 16 16 H 1.08999 * 110.71637 * 205.95748 * 15 14 13 17 17 N 1.46494 * 110.71905 * 82.85688 * 15 14 13 18 18 C 1.36945 * 119.99612 * 88.84902 * 17 15 14 19 19 H 1.07999 * 120.00077 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99637 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99539 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46712 * 90.00052 * 22 20 18 24 24 H 1.48499 * 109.46916 * 209.99467 * 22 20 18 25 25 H 1.48492 * 109.46909 * 330.00070 * 22 20 18 26 26 C 1.47487 * 125.59103 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.96296 * 300.32056 * 26 12 10 28 28 C 1.52993 * 110.03575 * 61.64084 * 26 12 10 29 29 H 1.09002 * 109.47176 * 270.20593 * 1 2 3 30 30 H 1.08999 * 109.46613 * 30.19962 * 1 2 3 31 31 H 1.08994 * 109.47020 * 150.20177 * 1 2 3 32 32 H 1.09004 * 109.46806 * 330.02439 * 8 7 5 33 33 H 1.08997 * 109.47568 * 210.02302 * 8 7 5 34 34 H 1.09005 * 109.47384 * 60.00668 * 9 8 7 35 35 H 1.09001 * 109.47772 * 300.00448 * 9 8 7 36 36 H 1.09002 * 110.36819 * 37.07445 * 13 12 10 37 37 H 1.09004 * 110.36335 * 274.74987 * 13 12 10 38 38 H 1.08994 * 111.00399 * 278.93148 * 14 13 12 39 39 H 1.09010 * 111.03564 * 155.09966 * 14 13 12 40 40 H 0.96995 * 120.00290 * 269.11793 * 17 15 14 41 41 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.47080 * 177.61265 * 28 26 12 43 43 H 1.08997 * 109.47020 * 297.60367 * 28 26 12 44 44 H 1.08997 * 109.47062 * 57.61051 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7269 -0.0057 5 6 3.6036 -0.6054 -0.0037 6 17 5.1011 -1.4836 -0.0094 7 6 2.3531 -1.1315 0.0036 8 6 1.9579 -2.5858 0.0081 9 6 1.8312 -3.0754 1.4520 10 6 1.4367 -4.5298 1.4564 11 8 1.2725 -5.1168 0.4079 12 7 1.2652 -5.1780 2.6256 13 6 1.4306 -4.5890 3.9669 14 6 0.5614 -5.4712 4.8974 15 6 0.7829 -6.8804 4.2870 16 1 -0.0645 -7.5313 4.5021 17 7 2.0275 -7.4711 4.7850 18 6 2.0207 -8.2129 5.9361 19 1 1.0978 -8.3621 6.4769 20 6 3.1999 -8.7731 6.4077 21 7 3.1932 -9.4866 7.5138 22 14 4.7960 -8.5157 5.4719 23 1 5.4700 -7.2901 5.9707 24 1 5.6846 -9.6876 5.6771 25 1 4.5021 -8.3646 4.0242 26 6 0.8820 -6.5945 2.7736 27 1 -0.0835 -6.7704 2.2993 28 6 1.9465 -7.4942 2.1426 29 1 -0.3633 0.0037 1.0277 30 1 -0.3632 0.8882 -0.5169 31 1 -0.3633 -0.8917 -0.5107 32 1 2.7191 -3.1706 -0.5084 33 1 1.0014 -2.7040 -0.5010 34 1 1.0700 -2.4906 1.9685 35 1 2.7877 -2.9572 1.9611 36 1 1.0720 -3.5597 3.9761 37 1 2.4760 -4.6301 4.2729 38 1 -0.4880 -5.1818 4.8418 39 1 0.9220 -5.4295 5.9252 40 1 2.8571 -7.3335 4.3016 41 1 4.0173 -9.8778 7.8436 42 1 1.6756 -8.5390 2.2942 43 1 2.0106 -7.2869 1.0744 44 1 2.9116 -7.2976 2.6095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987602384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 39.453167 kcal Electronic energy + Delta-G solvation = -27677.633592 eV Core-core repulsion = 23659.999216 eV Total energy + Delta-G solvation = -4017.634376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -45.45201 -40.15606 -37.90074 -37.57492 -36.12501 -34.16173 -33.49703 -31.88762 -31.08654 -30.74671 -29.39177 -29.11131 -25.68714 -25.50510 -23.23733 -22.58801 -21.91146 -21.50092 -19.71637 -18.70821 -18.19761 -18.09539 -17.94829 -16.89422 -16.40801 -15.83306 -15.37284 -14.72764 -14.38677 -14.32877 -13.83305 -13.78896 -13.46105 -13.40738 -13.26351 -13.18176 -13.04230 -12.75377 -12.66211 -12.56511 -12.42688 -12.14360 -11.90592 -11.60727 -11.53743 -11.20577 -11.15688 -11.11966 -10.87039 -10.75287 -10.36691 -10.35578 -10.16878 -9.77455 -9.62492 -9.48461 -9.03342 -8.49070 -7.38579 -5.86418 -3.22990 0.69169 0.79666 1.63617 2.69429 3.04163 3.23445 3.29758 3.32813 3.39256 3.61826 4.13047 4.38523 4.41179 4.50163 4.72749 4.82733 4.89878 4.93634 5.05921 5.09780 5.16044 5.21272 5.25184 5.31245 5.40475 5.51468 5.55492 5.58267 5.65150 5.68366 5.74048 5.83562 5.92982 6.14553 6.23849 6.31727 6.44933 6.58250 6.65110 6.74983 7.65394 7.68023 7.89423 8.24195 8.32607 9.10071 9.82382 10.01201 11.31520 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002814 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.688005 B = 9946.343076 C =10762.517977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.348 5.348 4 O 0.109 5.891 5 C 0.000 4.000 6 Cl 0.052 6.948 7 C -0.164 4.164 8 C -0.029 4.029 9 C -0.132 4.132 10 C 0.527 3.473 11 O -0.546 6.546 12 N -0.610 5.610 13 C 0.102 3.898 14 C -0.158 4.158 15 C 0.177 3.823 16 H 0.078 0.922 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.010 3.990 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.125 3.875 27 H 0.076 0.924 28 C -0.153 4.153 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.365 0.635 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 19.193 -15.209 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 N -0.054 5.054 4 O 0.042 5.958 5 C -0.090 4.090 6 Cl 0.080 6.920 7 C -0.169 4.169 8 C -0.067 4.067 9 C -0.172 4.172 10 C 0.316 3.684 11 O -0.424 6.424 12 N -0.344 5.344 13 C -0.021 4.021 14 C -0.199 4.199 15 C 0.066 3.934 16 H 0.095 0.905 17 N -0.383 5.383 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.022 3.978 27 H 0.094 0.906 28 C -0.211 4.211 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.200 0.800 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.718 19.993 -15.609 25.636 hybrid contribution 1.608 -0.596 -0.344 1.749 sum -2.109 19.398 -15.952 25.203 Atomic orbital electron populations 1.20257 0.85078 1.04313 1.03981 1.23375 0.99218 0.87806 1.02037 1.73956 0.88554 1.22992 1.19889 1.84918 1.22096 1.20755 1.68012 1.24649 0.91233 0.84896 1.08204 1.98479 1.28061 1.68777 1.96647 1.20904 0.89794 0.98396 1.07807 1.19709 1.04150 0.86437 0.96385 1.21607 1.03998 0.93489 0.98147 1.20090 0.77294 0.88468 0.82550 1.90683 1.52008 1.68945 1.30770 1.48832 1.67805 1.12057 1.05751 1.22340 1.00851 0.96979 0.81881 1.23490 0.98380 0.97858 1.00216 1.21165 0.91158 0.92565 0.88550 0.90465 1.42901 1.04640 1.61742 1.28988 1.19053 0.96350 1.23661 0.98647 0.88990 1.24647 0.97279 0.99599 0.97150 1.69693 1.27067 1.38446 1.22522 0.86678 0.85124 0.77618 0.79791 1.21053 1.21581 1.20199 1.22088 0.98135 0.79838 0.97765 0.90571 1.21976 0.98914 0.99854 1.00342 0.89586 0.90134 0.89410 0.89144 0.88912 0.88760 0.88831 0.91433 0.91303 0.91612 0.89001 0.79977 0.92942 0.91129 0.92256 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 36.01 0.37 -0.11 16 2 C 0.03 0.31 7.32 -82.12 -0.60 -0.29 16 3 N -0.35 -3.78 12.07 33.44 0.40 -3.37 16 4 O 0.11 1.16 11.20 17.11 0.19 1.35 16 5 C 0.00 0.00 8.12 29.81 0.24 0.24 16 6 Cl 0.05 0.45 29.23 -51.86 -1.52 -1.06 16 7 C -0.16 -1.52 5.58 -104.38 -0.58 -2.10 16 8 C -0.03 -0.27 4.90 -27.89 -0.14 -0.40 16 9 C -0.13 -1.28 4.69 -27.89 -0.13 -1.41 16 10 C 0.53 7.11 7.65 -10.98 -0.08 7.02 16 11 O -0.55 -8.91 15.05 5.56 0.08 -8.83 16 12 N -0.61 -8.55 3.08 -162.66 -0.50 -9.05 16 13 C 0.10 1.31 6.67 -2.53 -0.02 1.29 16 14 C -0.16 -2.28 6.77 -24.58 -0.17 -2.45 16 15 C 0.18 3.05 3.46 -66.09 -0.23 2.82 16 16 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 17 N -0.74 -15.93 4.40 -51.65 -0.23 -16.16 16 18 C -0.25 -6.48 10.45 -15.06 -0.16 -6.64 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 21 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 22 Si 0.88 21.29 27.73 -169.99 -4.71 16.57 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.34 6.45 56.52 0.36 -5.97 16 26 C 0.13 1.96 3.45 -66.70 -0.23 1.73 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 C -0.15 -2.60 8.48 37.15 0.32 -2.29 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.44 7.65 -51.93 -0.40 0.05 16 32 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.09 0.82 7.60 -51.93 -0.39 0.43 16 34 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 40 H 0.36 7.96 3.45 -40.82 -0.14 7.82 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.01 6.93 -51.93 -0.36 0.65 16 44 H 0.06 1.05 6.14 -51.93 -0.32 0.73 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -31.22 375.65 -7.57 -38.79 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.23 Total: 5.86 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.45 Total: -55.93 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.52 Total: -1.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -7.57 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987602384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.238 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds