Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30214 * 126.78720 * 2 1 4 4 O 1.20914 * 111.64556 * 180.26359 * 3 2 1 5 5 C 1.34059 * 111.55509 * 359.72817 * 4 3 2 6 6 Cl 1.73598 * 126.80069 * 179.97438 * 5 4 3 7 7 C 1.35678 * 106.40594 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01609 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46970 * 90.02288 * 8 7 5 10 10 C 1.50704 * 109.46850 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99864 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99504 * 180.02562 * 10 9 8 13 13 C 1.47419 * 125.65006 * 0.02562 * 12 10 9 14 14 C 1.54905 * 104.92834 * 204.05588 * 13 12 10 15 15 C 1.55282 * 101.53029 * 323.13017 * 14 13 12 16 16 H 1.08998 * 110.77201 * 276.94152 * 15 14 13 17 17 N 1.46491 * 110.75893 * 153.77787 * 15 14 13 18 18 C 1.36932 * 119.99998 * 91.37947 * 17 15 14 19 19 H 1.08003 * 120.00477 * 359.97438 * 18 17 15 20 20 C 1.38825 * 120.00141 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99654 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47153 * 60.00143 * 22 20 18 24 24 H 1.48497 * 109.47061 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47335 * 300.00011 * 22 20 18 26 26 C 1.47023 * 125.64409 * 180.02562 * 12 10 9 27 27 H 1.09002 * 109.88373 * 59.54097 * 26 12 10 28 28 C 1.52999 * 109.88034 * 298.52925 * 26 12 10 29 29 H 1.09001 * 109.47065 * 270.17582 * 1 2 3 30 30 H 1.08992 * 109.47255 * 30.18566 * 1 2 3 31 31 H 1.09003 * 109.46818 * 150.18694 * 1 2 3 32 32 H 1.08994 * 109.46812 * 330.02221 * 8 7 5 33 33 H 1.08995 * 109.47078 * 210.01598 * 8 7 5 34 34 H 1.08993 * 109.47297 * 59.99763 * 9 8 7 35 35 H 1.09008 * 109.46795 * 299.99777 * 9 8 7 36 36 H 1.09002 * 110.36926 * 322.95057 * 13 12 10 37 37 H 1.08995 * 110.36556 * 85.16341 * 13 12 10 38 38 H 1.09001 * 111.00720 * 81.12130 * 14 13 12 39 39 H 1.08996 * 111.00844 * 204.97306 * 14 13 12 40 40 H 0.97002 * 120.00134 * 271.37390 * 17 15 14 41 41 H 0.97001 * 120.00130 * 179.97438 * 21 20 18 42 42 H 1.09008 * 109.47282 * 61.45462 * 28 26 12 43 43 H 1.09003 * 109.47218 * 181.45554 * 28 26 12 44 44 H 1.09004 * 109.47562 * 301.45759 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 -0.0052 5 6 3.6037 -0.6052 -0.0035 6 17 5.1012 -1.4833 -0.0099 7 6 2.3531 -1.1314 0.0031 8 6 1.9581 -2.5857 0.0069 9 6 1.8306 -3.0757 1.4507 10 6 1.4362 -4.5302 1.4545 11 8 1.2727 -5.1169 0.4057 12 7 1.2642 -5.1787 2.6235 13 6 1.4277 -4.5896 3.9650 14 6 1.7374 -5.7906 4.8931 15 6 0.8320 -6.8952 4.2839 16 1 -0.1873 -6.8109 4.6607 17 7 1.3773 -8.2259 4.5629 18 6 0.9868 -8.9041 5.6865 19 1 0.2771 -8.4579 6.3674 20 6 1.5032 -10.1654 5.9506 21 7 2.3677 -10.7095 5.1207 22 14 0.9710 -11.0902 7.4838 23 1 -0.4981 -11.3044 7.4478 24 1 1.6612 -12.4041 7.5338 25 1 1.3264 -10.2977 8.6884 26 6 0.8823 -6.5907 2.7719 27 1 1.6237 -7.2279 2.2898 28 6 -0.4930 -6.8264 2.1444 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8882 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 2.7195 -3.1703 -0.5093 33 1 1.0018 -2.7038 -0.5026 34 1 1.0693 -2.4911 1.9670 35 1 2.7870 -2.9576 1.9603 36 1 2.2571 -3.8823 3.9702 37 1 0.5074 -4.0963 4.2774 38 1 2.7890 -6.0708 4.8317 39 1 1.4522 -5.5728 5.9222 40 1 2.0150 -8.6267 3.9515 41 1 2.7288 -11.5906 5.3053 42 1 -0.4506 -6.5976 1.0795 43 1 -0.7808 -7.8689 2.2809 44 1 -1.2276 -6.1807 2.6257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987602385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 11.237802 kcal Electronic energy + Delta-G solvation = -27211.984022 eV Core-core repulsion = 23193.126135 eV Total energy + Delta-G solvation = -4018.857886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.15194 -41.23298 -38.92648 -38.27754 -36.85351 -35.88726 -34.26665 -33.35256 -32.33148 -31.62902 -30.57863 -29.68217 -26.83042 -26.54174 -24.75977 -23.63791 -22.59377 -22.31114 -21.49668 -19.96257 -19.13962 -18.93163 -18.78565 -17.99487 -17.34844 -16.76995 -16.51633 -16.08327 -15.73955 -15.41384 -15.07015 -14.65350 -14.47174 -14.30942 -14.18878 -14.07341 -13.94021 -13.60320 -13.53410 -13.46255 -13.24801 -13.19133 -13.07462 -12.88007 -12.84577 -12.61609 -12.47117 -12.23476 -12.18524 -12.08037 -11.82263 -11.70674 -11.51049 -11.03756 -10.90604 -10.76763 -10.27911 -9.61073 -9.01195 -7.93073 -5.22737 0.00969 0.09046 0.97533 1.50042 1.52553 1.58453 1.68225 1.99627 2.51688 2.58757 2.99816 3.37239 3.44506 3.54517 3.73464 3.78800 3.82870 4.00261 4.03261 4.21799 4.24530 4.27511 4.40811 4.45909 4.53441 4.55499 4.66235 4.69710 4.71340 4.78317 4.80869 4.94888 5.00752 5.04191 5.09582 5.24859 5.26640 5.27105 5.38561 5.49481 5.56056 6.27368 6.64335 6.96600 7.20564 7.33763 8.06746 8.29852 9.30288 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002211 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.775549 B =12659.709278 C =13110.337506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 N -0.371 5.371 4 O 0.096 5.904 5 C -0.002 4.002 6 Cl 0.058 6.942 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.120 4.120 10 C 0.524 3.476 11 O -0.581 6.581 12 N -0.610 5.610 13 C 0.106 3.894 14 C -0.150 4.150 15 C 0.170 3.830 16 H 0.072 0.928 17 N -0.729 5.729 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.076 4.076 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.301 1.301 25 H -0.275 1.275 26 C 0.131 3.869 27 H 0.041 0.959 28 C -0.143 4.143 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.370 0.630 41 H 0.250 0.750 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 25.087 -8.493 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 N -0.080 5.080 4 O 0.032 5.968 5 C -0.092 4.092 6 Cl 0.086 6.914 7 C -0.168 4.168 8 C -0.062 4.062 9 C -0.160 4.160 10 C 0.315 3.685 11 O -0.462 6.462 12 N -0.344 5.344 13 C -0.016 4.016 14 C -0.191 4.191 15 C 0.060 3.940 16 H 0.090 0.910 17 N -0.368 5.368 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.228 1.228 25 H -0.201 1.201 26 C 0.027 3.973 27 H 0.060 0.940 28 C -0.201 4.201 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.111 26.005 -8.942 27.581 hybrid contribution 0.716 -2.110 0.425 2.268 sum -1.396 23.895 -8.517 25.406 Atomic orbital electron populations 1.20435 0.83060 1.05151 1.05213 1.23848 1.00440 0.87203 1.00452 1.73965 0.88809 1.23879 1.21345 1.84895 1.22236 1.21138 1.68551 1.24810 0.91698 0.84795 1.07899 1.98482 1.27792 1.68531 1.96593 1.20872 0.89671 0.98239 1.08001 1.19627 1.04045 0.86215 0.96307 1.21600 1.05330 0.90303 0.98730 1.20845 0.76227 0.89854 0.81592 1.90683 1.53395 1.70030 1.32048 1.48650 1.67719 1.11041 1.06950 1.22515 1.03258 0.95892 0.79981 1.23411 1.00332 0.95516 0.99852 1.21470 0.96683 0.85105 0.90744 0.91033 1.42523 1.51912 1.15862 1.26531 1.19591 1.19767 0.97783 0.99686 0.89906 1.25573 1.00429 0.98924 1.01906 1.69823 1.35573 1.17272 1.39551 0.85224 0.77609 0.77362 0.79630 1.20361 1.22764 1.20119 1.21624 0.96299 0.82440 0.96985 0.94034 1.21918 0.95755 1.01657 1.00770 0.88013 0.89661 0.88276 0.90292 0.88551 0.85921 0.87538 0.88275 0.88622 0.92773 0.89390 0.79774 0.94138 0.92659 0.92829 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C 0.04 0.62 7.32 43.55 0.32 0.93 16 3 N -0.37 -7.34 12.07 -49.44 -0.60 -7.94 16 4 O 0.10 1.88 11.20 71.46 0.80 2.68 16 5 C 0.00 -0.04 8.12 67.23 0.55 0.51 16 6 Cl 0.06 0.89 29.23 -2.72 -0.08 0.81 16 7 C -0.16 -2.59 5.58 -19.71 -0.11 -2.70 16 8 C -0.02 -0.38 4.90 29.85 0.15 -0.24 16 9 C -0.12 -1.87 4.69 29.85 0.14 -1.73 16 10 C 0.52 13.22 7.64 87.66 0.67 13.89 16 11 O -0.58 -19.24 15.01 -3.02 -0.05 -19.28 16 12 N -0.61 -15.98 3.07 -788.08 -2.42 -18.40 16 13 C 0.11 2.11 6.69 86.85 0.58 2.69 16 14 C -0.15 -4.33 6.78 32.03 0.22 -4.11 16 15 C 0.17 6.10 3.14 46.22 0.15 6.24 16 16 H 0.07 2.51 7.80 -2.39 -0.02 2.49 16 17 N -0.73 -35.06 5.23 -317.13 -1.66 -36.72 16 18 C -0.24 -12.44 9.96 84.04 0.84 -11.60 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.24 5.50 84.87 0.47 -3.78 16 21 N -0.97 -58.74 13.06 21.66 0.28 -58.46 16 22 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.13 4.42 3.21 45.34 0.15 4.56 16 27 H 0.04 1.69 7.72 -2.39 -0.02 1.67 16 28 C -0.14 -4.52 9.11 71.98 0.66 -3.87 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.70 7.65 -2.39 -0.02 0.68 16 32 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.10 1.51 7.60 -2.39 -0.02 1.49 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.45 7.85 -2.38 -0.02 1.43 16 36 H 0.10 1.46 7.48 -2.39 -0.02 1.44 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.37 19.84 7.56 -92.71 -0.70 19.13 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.05 1.82 6.87 -2.38 -0.02 1.80 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.84 382.66 4.14 -64.70 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.32 Total: 25.02 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.50 Total: 0.81 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.39 Total: -121.52 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.75 Total: -16.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -68.84 4.14 -64.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987602385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.938 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds