Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30225 * 126.78593 * 2 1 4 4 O 1.20916 * 111.64481 * 180.26227 * 3 2 1 5 5 C 1.34072 * 111.55312 * 359.72909 * 4 3 2 6 6 Cl 1.73600 * 126.79667 * 179.97438 * 5 4 3 7 7 C 1.35674 * 106.40311 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.01146 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47552 * 90.02020 * 8 7 5 10 10 C 1.50701 * 109.47482 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00131 * 180.02562 * 10 9 8 13 13 C 1.47427 * 125.65113 * 0.03019 * 12 10 9 14 14 C 1.55385 * 104.87680 * 204.10138 * 13 12 10 15 15 C 1.55151 * 101.36581 * 323.01827 * 14 13 12 16 16 H 1.09006 * 110.71879 * 153.94406 * 15 14 13 17 17 N 1.46498 * 110.72251 * 277.04281 * 15 14 13 18 18 C 1.36943 * 119.99727 * 271.15963 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.47026 * 125.65059 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.88223 * 59.55088 * 26 12 10 28 28 C 1.53000 * 109.87968 * 298.39334 * 26 12 10 29 29 H 1.08998 * 109.46816 * 270.17925 * 1 2 3 30 30 H 1.08999 * 109.47233 * 30.18590 * 1 2 3 31 31 H 1.09005 * 109.46594 * 150.18556 * 1 2 3 32 32 H 1.09006 * 109.46733 * 330.01611 * 8 7 5 33 33 H 1.08997 * 109.47013 * 210.02269 * 8 7 5 34 34 H 1.08999 * 109.47049 * 59.99456 * 9 8 7 35 35 H 1.09004 * 109.46919 * 299.99887 * 9 8 7 36 36 H 1.09000 * 110.36567 * 322.94431 * 13 12 10 37 37 H 1.09009 * 110.36427 * 85.14659 * 13 12 10 38 38 H 1.08996 * 111.18915 * 204.98071 * 14 13 12 39 39 H 1.08997 * 111.02013 * 80.98282 * 14 13 12 40 40 H 0.96998 * 120.00095 * 91.15422 * 17 15 14 41 41 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 42 42 H 1.09008 * 109.46894 * 302.18592 * 28 26 12 43 43 H 1.08993 * 109.47673 * 62.18386 * 28 26 12 44 44 H 1.09000 * 109.46806 * 182.19413 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7271 -0.0051 5 6 3.6038 -0.6052 -0.0034 6 17 5.1013 -1.4833 -0.0098 7 6 2.3532 -1.1313 0.0031 8 6 1.9582 -2.5856 0.0069 9 6 1.8307 -3.0758 1.4505 10 6 1.4363 -4.5303 1.4543 11 8 1.2728 -5.1169 0.4055 12 7 1.2642 -5.1788 2.6232 13 6 1.4277 -4.5899 3.9648 14 6 1.7395 -5.7953 4.8943 15 6 0.8316 -6.8953 4.2836 16 1 1.2344 -7.8868 4.4908 17 7 -0.5377 -6.7778 4.7907 18 6 -0.9001 -7.4273 5.9406 19 1 -0.1765 -8.0264 6.4733 20 6 -2.1974 -7.3155 6.4214 21 7 -3.0795 -6.5858 5.7719 22 14 -2.6919 -8.2020 7.9895 23 1 -4.1198 -7.9227 8.2869 24 1 -1.8497 -7.7237 9.1152 25 1 -2.4992 -9.6639 7.8136 26 6 0.8814 -6.5905 2.7716 27 1 1.6222 -7.2282 2.2892 28 6 -0.4959 -6.8244 2.1477 29 1 -0.3633 0.0032 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5110 32 1 2.7196 -3.1702 -0.5095 33 1 1.0019 -2.7037 -0.5027 34 1 1.0693 -2.4911 1.9668 35 1 2.7870 -2.9577 1.9601 36 1 2.2571 -3.8826 3.9701 37 1 0.5073 -4.0963 4.2771 38 1 1.4555 -5.5820 5.9248 39 1 2.7907 -6.0765 4.8306 40 1 -1.1877 -6.2399 4.3121 41 1 -2.8228 -6.1257 4.9574 42 1 -1.2260 -6.1690 2.6227 43 1 -0.4531 -6.6073 1.0804 44 1 -0.7901 -7.8635 2.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987602386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = 35.760184 kcal Electronic energy + Delta-G solvation = -27609.511575 eV Core-core repulsion = 23591.717059 eV Total energy + Delta-G solvation = -4017.794516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -45.42347 -40.12137 -37.85455 -37.57111 -36.08782 -34.30868 -33.46953 -31.86861 -30.99970 -30.63269 -29.12250 -28.62499 -25.62168 -25.23666 -23.50347 -22.55819 -21.88383 -21.49032 -19.83347 -18.64550 -18.17062 -18.07132 -17.62336 -16.86827 -16.28893 -15.86148 -15.31616 -14.89528 -14.63462 -14.01606 -13.76122 -13.71755 -13.41377 -13.37713 -13.27498 -13.15041 -13.01367 -12.75204 -12.70178 -12.48936 -12.32698 -12.09928 -11.86728 -11.51986 -11.33644 -11.27624 -11.10711 -11.06157 -10.73498 -10.33685 -10.31662 -10.27293 -9.99838 -9.74416 -9.47421 -9.25355 -9.00413 -8.43572 -7.14477 -6.18326 -3.19683 0.69105 0.82141 1.67598 2.73713 3.08901 3.26811 3.47243 3.49916 3.66243 3.67674 4.17362 4.42097 4.45324 4.59742 4.76849 4.87845 4.93075 4.97832 5.13739 5.17554 5.25360 5.30361 5.33387 5.36736 5.46468 5.58674 5.62054 5.65064 5.70203 5.72308 5.81822 5.88030 5.98846 6.20841 6.27918 6.36695 6.49267 6.61113 6.71836 6.82888 7.68954 7.72870 7.73448 8.28817 8.66807 9.12059 9.98520 10.12948 11.29131 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.002439 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.476788 B =11478.619745 C =11930.968203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.036 3.964 3 N -0.348 5.348 4 O 0.109 5.891 5 C -0.001 4.001 6 Cl 0.049 6.951 7 C -0.163 4.163 8 C -0.029 4.029 9 C -0.132 4.132 10 C 0.528 3.472 11 O -0.546 6.546 12 N -0.608 5.608 13 C 0.104 3.896 14 C -0.159 4.159 15 C 0.177 3.823 16 H 0.069 0.931 17 N -0.725 5.725 18 C -0.335 4.335 19 H 0.066 0.934 20 C -0.042 4.042 21 N -0.940 5.940 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.126 3.874 27 H 0.072 0.928 28 C -0.148 4.148 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.371 0.629 41 H 0.254 0.746 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 11.637 -11.133 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 N -0.054 5.054 4 O 0.042 5.958 5 C -0.091 4.091 6 Cl 0.078 6.922 7 C -0.167 4.167 8 C -0.067 4.067 9 C -0.172 4.172 10 C 0.316 3.684 11 O -0.425 6.425 12 N -0.341 5.341 13 C -0.019 4.019 14 C -0.200 4.200 15 C 0.065 3.935 16 H 0.087 0.913 17 N -0.369 5.369 18 C -0.466 4.466 19 H 0.084 0.916 20 C -0.240 4.240 21 N -0.585 5.585 22 Si 0.910 3.090 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.222 1.222 26 C 0.022 3.978 27 H 0.090 0.910 28 C -0.206 4.206 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.207 0.793 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.693 12.167 -10.565 20.512 hybrid contribution 1.437 -0.255 -0.984 1.761 sum 14.131 11.911 -11.549 21.793 Atomic orbital electron populations 1.20279 0.84987 1.04367 1.04154 1.23396 0.99276 0.87767 1.01843 1.73962 0.88523 1.22952 1.19921 1.84917 1.22133 1.20708 1.68031 1.24611 0.91058 0.84938 1.08536 1.98465 1.28163 1.68899 1.96701 1.20910 0.89788 0.98421 1.07617 1.19712 1.04184 0.86399 0.96394 1.21598 1.03904 0.93547 0.98131 1.20078 0.77332 0.88444 0.82531 1.90681 1.52177 1.68871 1.30732 1.48670 1.67476 1.12271 1.05726 1.22387 1.00751 0.96843 0.81880 1.23572 0.99554 0.96797 1.00067 1.21125 0.87219 0.96571 0.88594 0.91318 1.42564 1.06203 1.59266 1.28875 1.20031 0.97931 1.26766 1.01830 0.91625 1.25765 0.92027 1.01186 1.04974 1.70901 1.35643 1.33215 1.18762 0.83249 0.76129 0.75102 0.74520 1.21070 1.22254 1.22222 1.21993 0.96791 0.81177 0.97827 0.91026 1.21911 0.95974 1.02591 1.00158 0.89455 0.90092 0.89350 0.89173 0.88864 0.88702 0.88946 0.91632 0.91221 0.89369 0.91923 0.79266 0.93463 0.92251 0.92411 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.01 0.37 -0.23 16 2 C 0.04 0.36 7.32 -82.12 -0.60 -0.25 16 3 N -0.35 -3.96 12.07 33.44 0.40 -3.56 16 4 O 0.11 1.18 11.20 17.09 0.19 1.38 16 5 C 0.00 -0.01 8.12 29.82 0.24 0.23 16 6 Cl 0.05 0.40 29.23 -51.86 -1.52 -1.11 16 7 C -0.16 -1.58 5.58 -104.39 -0.58 -2.16 16 8 C -0.03 -0.28 4.90 -27.88 -0.14 -0.42 16 9 C -0.13 -1.37 4.69 -27.89 -0.13 -1.50 16 10 C 0.53 7.55 7.64 -10.99 -0.08 7.46 16 11 O -0.55 -9.36 15.03 5.55 0.08 -9.27 16 12 N -0.61 -9.08 3.07 -162.71 -0.50 -9.58 16 13 C 0.10 1.44 6.68 -2.27 -0.02 1.43 16 14 C -0.16 -2.46 6.81 -24.33 -0.17 -2.62 16 15 C 0.18 3.25 3.46 -66.10 -0.23 3.02 16 16 H 0.07 1.29 8.11 -51.93 -0.42 0.86 16 17 N -0.73 -16.64 4.60 -51.65 -0.24 -16.88 16 18 C -0.33 -8.78 9.97 -15.06 -0.15 -8.93 16 19 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 20 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 21 N -0.94 -27.91 13.70 55.49 0.76 -27.15 16 22 Si 1.08 24.88 29.92 -169.99 -5.09 19.80 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.30 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.13 2.11 3.43 -66.95 -0.23 1.88 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 C -0.15 -2.67 8.47 37.16 0.31 -2.36 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 36 H 0.07 0.72 7.48 -51.93 -0.39 0.34 16 37 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.37 8.92 4.41 -40.82 -0.18 8.74 16 41 H 0.25 7.44 6.77 -40.82 -0.28 7.16 16 42 H 0.06 1.17 6.21 -51.92 -0.32 0.84 16 43 H 0.06 1.03 6.90 -51.93 -0.36 0.67 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -31.03 377.13 -7.86 -38.89 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.16 Total: 7.51 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.49 Total: -5.70 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.43 Total: -57.17 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.27 Total: -7.90 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.80 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -1.52 Total: -1.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.03 -7.86 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987602386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.649 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds