Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30225 * 126.78593 * 2 1 4 4 O 1.20916 * 111.64481 * 180.26227 * 3 2 1 5 5 C 1.34072 * 111.55312 * 359.72909 * 4 3 2 6 6 Cl 1.73600 * 126.79667 * 179.97438 * 5 4 3 7 7 C 1.35674 * 106.40311 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.01146 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47552 * 90.02020 * 8 7 5 10 10 C 1.50701 * 109.47482 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00131 * 180.02562 * 10 9 8 13 13 C 1.47427 * 125.65113 * 0.03019 * 12 10 9 14 14 C 1.55385 * 104.87680 * 204.10138 * 13 12 10 15 15 C 1.55151 * 101.36581 * 323.01827 * 14 13 12 16 16 H 1.09006 * 110.71879 * 153.94406 * 15 14 13 17 17 N 1.46498 * 110.72251 * 277.04281 * 15 14 13 18 18 C 1.36943 * 119.99727 * 271.15963 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.47026 * 125.65059 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.88223 * 59.55088 * 26 12 10 28 28 C 1.53000 * 109.87968 * 298.39334 * 26 12 10 29 29 H 1.08998 * 109.46816 * 270.17925 * 1 2 3 30 30 H 1.08999 * 109.47233 * 30.18590 * 1 2 3 31 31 H 1.09005 * 109.46594 * 150.18556 * 1 2 3 32 32 H 1.09006 * 109.46733 * 330.01611 * 8 7 5 33 33 H 1.08997 * 109.47013 * 210.02269 * 8 7 5 34 34 H 1.08999 * 109.47049 * 59.99456 * 9 8 7 35 35 H 1.09004 * 109.46919 * 299.99887 * 9 8 7 36 36 H 1.09000 * 110.36567 * 322.94431 * 13 12 10 37 37 H 1.09009 * 110.36427 * 85.14659 * 13 12 10 38 38 H 1.08996 * 111.18915 * 204.98071 * 14 13 12 39 39 H 1.08997 * 111.02013 * 80.98282 * 14 13 12 40 40 H 0.96998 * 120.00095 * 91.15422 * 17 15 14 41 41 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 42 42 H 1.09008 * 109.46894 * 302.18592 * 28 26 12 43 43 H 1.08993 * 109.47673 * 62.18386 * 28 26 12 44 44 H 1.09000 * 109.46806 * 182.19413 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7271 -0.0051 5 6 3.6038 -0.6052 -0.0034 6 17 5.1013 -1.4833 -0.0098 7 6 2.3532 -1.1313 0.0031 8 6 1.9582 -2.5856 0.0069 9 6 1.8307 -3.0758 1.4505 10 6 1.4363 -4.5303 1.4543 11 8 1.2728 -5.1169 0.4055 12 7 1.2642 -5.1788 2.6232 13 6 1.4277 -4.5899 3.9648 14 6 1.7395 -5.7953 4.8943 15 6 0.8316 -6.8953 4.2836 16 1 1.2344 -7.8868 4.4908 17 7 -0.5377 -6.7778 4.7907 18 6 -0.9001 -7.4273 5.9406 19 1 -0.1765 -8.0264 6.4733 20 6 -2.1974 -7.3155 6.4214 21 7 -3.0795 -6.5858 5.7719 22 14 -2.6919 -8.2020 7.9895 23 1 -4.1198 -7.9227 8.2869 24 1 -1.8497 -7.7237 9.1152 25 1 -2.4992 -9.6639 7.8136 26 6 0.8814 -6.5905 2.7716 27 1 1.6222 -7.2282 2.2892 28 6 -0.4959 -6.8244 2.1477 29 1 -0.3633 0.0032 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5110 32 1 2.7196 -3.1702 -0.5095 33 1 1.0019 -2.7037 -0.5027 34 1 1.0693 -2.4911 1.9668 35 1 2.7870 -2.9577 1.9601 36 1 2.2571 -3.8826 3.9701 37 1 0.5073 -4.0963 4.2771 38 1 1.4555 -5.5820 5.9248 39 1 2.7907 -6.0765 4.8306 40 1 -1.1877 -6.2399 4.3121 41 1 -2.8228 -6.1257 4.9574 42 1 -1.2260 -6.1690 2.6227 43 1 -0.4531 -6.6073 1.0804 44 1 -0.7901 -7.8635 2.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987602386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 18.236285 kcal Electronic energy + Delta-G solvation = -27610.271468 eV Core-core repulsion = 23591.717059 eV Total energy + Delta-G solvation = -4018.554409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.19273 -41.35479 -39.11613 -38.30250 -36.89824 -36.04665 -34.31582 -33.36950 -32.33392 -31.65274 -30.25847 -29.73064 -26.69189 -26.56708 -25.43751 -23.69497 -22.64994 -22.36612 -21.19464 -19.82180 -19.50158 -18.98589 -18.82894 -18.07490 -17.53442 -16.84928 -16.70815 -16.06959 -15.91161 -15.52501 -15.04312 -14.79632 -14.42023 -14.40067 -14.27777 -14.08772 -13.90947 -13.88957 -13.61716 -13.59066 -13.26983 -13.24526 -13.06288 -12.88472 -12.77596 -12.49189 -12.32642 -12.27186 -11.96446 -11.86146 -11.78135 -11.72757 -11.22709 -11.07402 -10.89563 -10.82942 -10.30938 -9.67687 -9.08542 -8.33409 -5.27999 -0.02321 0.06554 0.92891 1.61339 1.61944 1.70669 1.86534 1.97083 2.49128 2.74003 2.95018 3.35764 3.43297 3.49382 3.69813 3.70234 3.72417 3.88012 3.97359 4.12989 4.16961 4.21476 4.25497 4.33428 4.47061 4.51207 4.61006 4.62724 4.69040 4.72051 4.73815 4.86599 4.94468 4.98874 5.00585 5.14901 5.18890 5.24579 5.31591 5.38973 5.67169 6.53300 6.57516 6.93862 7.12167 7.14268 8.03238 8.14856 9.17662 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.002439 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.476788 B =11478.619745 C =11930.968203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.035 3.965 3 N -0.370 5.370 4 O 0.100 5.900 5 C 0.001 3.999 6 Cl 0.063 6.937 7 C -0.165 4.165 8 C -0.022 4.022 9 C -0.123 4.123 10 C 0.526 3.474 11 O -0.576 6.576 12 N -0.609 5.609 13 C 0.109 3.891 14 C -0.148 4.148 15 C 0.167 3.833 16 H 0.066 0.934 17 N -0.736 5.736 18 C -0.323 4.323 19 H 0.070 0.930 20 C -0.103 4.103 21 N -0.977 5.977 22 Si 1.124 2.876 23 H -0.299 1.299 24 H -0.277 1.277 25 H -0.281 1.281 26 C 0.132 3.868 27 H 0.081 0.919 28 C -0.136 4.136 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.363 0.637 41 H 0.242 0.758 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.848 12.024 -10.795 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 N -0.079 5.079 4 O 0.035 5.965 5 C -0.089 4.089 6 Cl 0.092 6.908 7 C -0.169 4.169 8 C -0.060 4.060 9 C -0.162 4.162 10 C 0.317 3.683 11 O -0.457 6.457 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.188 4.188 15 C 0.057 3.943 16 H 0.084 0.916 17 N -0.380 5.380 18 C -0.455 4.455 19 H 0.088 0.912 20 C -0.294 4.294 21 N -0.625 5.625 22 Si 0.950 3.050 23 H -0.225 1.225 24 H -0.203 1.203 25 H -0.207 1.207 26 C 0.027 3.973 27 H 0.099 0.901 28 C -0.194 4.194 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.198 0.802 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.618 12.559 -10.237 21.822 hybrid contribution 0.964 -0.417 -1.173 1.574 sum 15.581 12.142 -11.410 22.812 Atomic orbital electron populations 1.20408 0.83539 1.05146 1.04888 1.23794 1.00263 0.87492 1.00744 1.73966 0.88867 1.23774 1.21248 1.84895 1.22077 1.21204 1.68358 1.24777 0.91703 0.84727 1.07735 1.98472 1.27358 1.68437 1.96578 1.20858 0.89777 0.98188 1.08107 1.19614 1.04040 0.86325 0.96008 1.21598 1.05171 0.90542 0.98910 1.20745 0.76286 0.89683 0.81618 1.90672 1.53411 1.69861 1.31728 1.48703 1.67540 1.11435 1.06544 1.22402 1.01559 0.96671 0.80668 1.23420 1.00283 0.95967 0.99157 1.21339 0.85528 0.97601 0.89863 0.91622 1.42680 1.08045 1.59037 1.28213 1.20351 0.97678 1.25325 1.02122 0.91227 1.27027 0.92718 1.02128 1.07568 1.71006 1.36589 1.35554 1.19340 0.82650 0.75220 0.74956 0.72150 1.22503 1.20289 1.20695 1.21784 0.96072 0.82948 0.96448 0.90085 1.21762 0.96504 1.01220 0.99960 0.88649 0.89487 0.88445 0.89453 0.89072 0.87413 0.86931 0.87614 0.92811 0.91032 0.88980 0.80165 0.94735 0.94330 0.92417 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.39 71.24 0.74 -0.36 16 2 C 0.04 0.65 7.32 43.54 0.32 0.97 16 3 N -0.37 -8.03 12.07 -49.42 -0.60 -8.63 16 4 O 0.10 2.04 11.20 71.34 0.80 2.84 16 5 C 0.00 0.01 8.12 67.23 0.55 0.56 16 6 Cl 0.06 0.91 29.23 -2.72 -0.08 0.83 16 7 C -0.16 -2.88 5.58 -19.71 -0.11 -2.99 16 8 C -0.02 -0.38 4.90 29.85 0.15 -0.23 16 9 C -0.12 -2.20 4.69 29.85 0.14 -2.06 16 10 C 0.53 13.94 7.64 87.66 0.67 14.61 16 11 O -0.58 -18.97 15.03 -3.04 -0.05 -19.01 16 12 N -0.61 -16.96 3.07 -787.09 -2.41 -19.37 16 13 C 0.11 2.74 6.68 87.02 0.58 3.32 16 14 C -0.15 -4.22 6.81 32.15 0.22 -4.00 16 15 C 0.17 5.95 3.46 46.18 0.16 6.11 16 16 H 0.07 2.38 8.11 -2.38 -0.02 2.36 16 17 N -0.74 -33.96 4.60 -317.34 -1.46 -35.42 16 18 C -0.32 -16.93 9.97 84.03 0.84 -16.10 16 19 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 20 C -0.10 -5.73 5.50 84.86 0.47 -5.26 16 21 N -0.98 -59.23 13.70 21.65 0.30 -58.93 16 22 Si 1.12 50.13 29.92 68.60 2.05 52.18 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.13 4.28 3.43 45.34 0.16 4.44 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 C -0.14 -4.97 8.47 71.98 0.61 -4.36 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.11 7.65 -2.38 -0.02 1.09 16 32 H 0.09 1.60 8.10 -2.38 -0.02 1.58 16 33 H 0.09 1.65 7.60 -2.39 -0.02 1.64 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 1.62 7.85 -2.38 -0.02 1.60 16 36 H 0.11 1.85 7.48 -2.39 -0.02 1.84 16 37 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.36 17.91 4.41 -92.71 -0.41 17.50 16 41 H 0.24 14.68 6.77 -92.71 -0.63 14.05 16 42 H 0.04 1.55 6.21 -2.38 -0.01 1.54 16 43 H 0.06 2.08 6.90 -2.39 -0.02 2.06 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -67.38 377.13 4.80 -62.59 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.76 Total: 28.29 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.48 Total: -5.36 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.17 Total: -122.35 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.75 Total: -16.17 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -67.38 4.80 -62.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987602386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.825 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds