Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47163 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47223 * 60.00535 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21684 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.46729 * 120.00034 * 180.02562 * 14 13 12 17 17 O 1.35333 * 126.64404 * 359.68378 * 16 14 13 18 18 C 1.33670 * 107.68685 * 179.87577 * 17 16 14 19 19 N 1.30622 * 109.14639 * 0.39893 * 18 17 16 20 20 C 1.33686 * 109.00220 * 359.75125 * 19 18 17 21 21 C 1.50696 * 126.27693 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47430 * 119.97535 * 21 20 19 23 23 F 1.39901 * 109.47263 * 239.97557 * 21 20 19 24 24 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 25 25 C 1.54402 * 106.75093 * 247.06032 * 24 12 11 26 26 C 1.54761 * 104.07426 * 24.70175 * 25 24 12 27 27 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 28 28 H 1.08998 * 111.81485 * 301.92107 * 27 9 7 29 29 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 31 31 H 1.09009 * 110.36528 * 85.83535 * 10 9 7 32 32 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 33 33 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 34 34 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 35 35 H 1.07994 * 125.42885 * 180.14714 * 18 17 16 36 36 H 1.08995 * 109.47184 * 359.97379 * 21 20 19 37 37 H 1.08994 * 110.01917 * 6.22401 * 24 12 11 38 38 H 1.09000 * 110.01627 * 127.57375 * 24 12 11 39 39 H 1.09003 * 110.41899 * 266.11438 * 25 24 12 40 40 H 1.09004 * 110.64966 * 143.39971 * 25 24 12 41 41 H 1.09002 * 110.67220 * 203.89107 * 26 25 24 42 42 H 1.09001 * 110.66738 * 80.92326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1546 -6.5815 -0.4228 16 6 -0.8272 -6.7900 -2.7181 17 8 -0.2147 -6.4899 -3.8870 18 6 -0.7899 -7.2216 -4.8464 19 7 -1.7354 -7.9524 -4.3191 20 6 -1.7888 -7.7131 -3.0049 21 6 -2.7375 -8.3476 -2.0209 22 9 -2.0070 -9.0341 -1.0450 23 9 -3.5108 -7.3538 -1.4113 24 6 1.1755 -5.8269 1.0725 25 6 2.5895 -5.4575 1.5707 26 6 2.6838 -3.9305 1.3371 27 6 1.9331 -3.7264 -0.0016 28 1 2.5871 -3.8736 -0.8611 29 1 -0.4850 0.8401 0.0004 30 1 -0.5987 -1.7507 0.6071 31 1 -0.5260 -2.4944 -1.0198 32 1 -0.3541 -3.8788 1.7122 33 1 -1.3619 -4.3249 0.2954 34 1 0.9711 -5.0335 -2.0451 35 1 -0.5190 -7.2075 -5.8917 36 1 -3.3904 -9.0460 -2.5443 37 1 0.4765 -5.8272 1.9087 38 1 1.1895 -6.8080 0.5977 39 1 3.3471 -5.9804 0.9870 40 1 2.6962 -5.6887 2.6306 41 1 3.7243 -3.6188 1.2460 42 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992187302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = -73.163839 kcal Electronic energy + Delta-G solvation = -31269.593982 eV Core-core repulsion = 26695.279486 eV Total energy + Delta-G solvation = -4574.314496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.96348 -46.96860 -43.86133 -40.26838 -38.20636 -35.65744 -34.31860 -33.58078 -31.67777 -31.26036 -29.80533 -27.41666 -26.76502 -25.98919 -24.08859 -23.86611 -22.49778 -21.30098 -20.09593 -19.98151 -18.95677 -18.48869 -17.58382 -17.41277 -17.31947 -17.08008 -16.80140 -15.89439 -15.80020 -15.01814 -14.70655 -14.66906 -14.35367 -14.03196 -13.80779 -13.55722 -13.30031 -13.26674 -12.87632 -12.85308 -12.25504 -11.97068 -11.90848 -11.76693 -11.60312 -11.28537 -11.18945 -11.04016 -10.88416 -10.73660 -10.57394 -10.34463 -10.16343 -10.03649 -9.92899 -9.73728 -9.58882 -9.54636 -8.74149 -8.67936 -6.90048 -5.68417 -3.11992 0.40429 1.90576 2.03972 2.95881 3.06878 3.11870 3.36597 3.42212 3.44752 3.88299 4.06995 4.31505 4.43993 4.72084 4.90030 4.91064 5.02015 5.09479 5.12595 5.26265 5.48172 5.53586 5.58679 5.75076 5.79076 5.93522 6.01649 6.06977 6.14448 6.30761 6.37231 6.48596 6.53947 6.70625 6.72734 6.86917 6.97118 7.03765 7.48749 7.51906 7.61154 7.83519 8.08834 8.32633 9.17386 9.78295 10.41825 11.34266 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.003507 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.517060 B = 7982.064489 C = 8539.877930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.142 4.142 12 C 0.159 3.841 13 N -0.685 5.685 14 C 0.594 3.406 15 O -0.487 6.487 16 C -0.037 4.037 17 O -0.180 6.180 18 C 0.203 3.797 19 N -0.472 5.472 20 C -0.026 4.026 21 C 0.363 3.637 22 F -0.183 7.183 23 F -0.180 7.180 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.162 3.838 28 H 0.048 0.952 29 H 0.252 0.748 30 H 0.110 0.890 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.404 0.596 35 H 0.263 0.737 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 -16.858 -7.176 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.181 4.181 12 C 0.074 3.926 13 N -0.335 5.335 14 C 0.376 3.624 15 O -0.362 6.362 16 C -0.095 4.095 17 O -0.065 6.065 18 C -0.022 4.022 19 N -0.200 5.200 20 C -0.150 4.150 21 C 0.308 3.692 22 F -0.164 7.164 23 F -0.161 7.161 24 C -0.150 4.150 25 C -0.162 4.162 26 C -0.169 4.169 27 C 0.054 3.946 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.279 0.721 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.601 -17.198 -6.776 18.554 hybrid contribution 1.168 1.491 -0.449 1.947 sum -0.433 -15.707 -7.225 17.295 Atomic orbital electron populations 1.69807 1.04900 1.24679 1.57402 1.24785 0.95664 0.97697 1.02338 0.86026 0.78645 0.83718 0.77252 1.20534 1.21839 1.21728 1.19079 0.90481 0.82230 1.43169 0.90406 1.44541 1.01780 0.99164 1.86494 1.21986 0.84386 0.92959 0.97964 1.23364 0.96453 0.97992 1.00338 1.21782 0.97348 0.92653 0.80850 1.45814 1.34806 1.41046 1.11789 1.16346 0.81624 0.80369 0.84043 1.90969 1.49837 1.60032 1.35390 1.23515 0.97695 1.01637 0.86667 1.84589 1.51837 1.53917 1.16124 1.28372 0.89617 0.88058 0.96189 1.70132 1.19568 1.24157 1.06136 1.22385 0.99887 0.99979 0.92746 1.19148 0.84689 0.83937 0.81391 1.93064 1.79186 1.79135 1.64988 1.93087 1.74701 1.63763 1.84572 1.22298 0.97003 0.97443 0.98221 1.22395 0.96204 0.97315 1.00332 1.22964 1.00448 0.93970 0.99553 1.21803 0.91405 0.85794 0.95605 0.93486 0.93748 0.87275 0.97333 0.90936 0.91435 0.76038 0.72134 0.85378 0.90769 0.92171 0.92334 0.92010 0.92254 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.07 55.49 0.56 -25.74 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.22 -5.86 10.01 -15.06 -0.15 -6.01 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.34 3.03 -161.10 -0.49 -14.82 16 10 C 0.15 3.65 5.90 -2.59 -0.02 3.63 16 11 C -0.14 -2.86 5.75 -24.74 -0.14 -3.00 16 12 C 0.16 2.81 0.74 -129.37 -0.10 2.71 16 13 N -0.69 -10.94 5.24 -46.63 -0.24 -11.18 16 14 C 0.59 9.61 6.96 -12.83 -0.09 9.52 16 15 O -0.49 -8.91 11.80 5.20 0.06 -8.85 16 16 C -0.04 -0.52 7.18 -36.83 -0.26 -0.78 16 17 O -0.18 -2.01 10.57 4.44 0.05 -1.96 16 18 C 0.20 1.68 13.21 52.25 0.69 2.37 16 19 N -0.47 -5.21 11.26 -10.88 -0.12 -5.33 16 20 C -0.03 -0.33 6.60 -82.47 -0.54 -0.88 16 21 C 0.36 4.54 5.10 36.00 0.18 4.72 16 22 F -0.18 -2.60 16.20 2.25 0.04 -2.56 16 23 F -0.18 -2.71 16.20 2.25 0.04 -2.67 16 24 C -0.11 -1.76 5.23 -25.69 -0.13 -1.90 16 25 C -0.12 -1.81 6.85 -25.07 -0.17 -1.98 16 26 C -0.13 -2.27 6.20 -24.84 -0.15 -2.42 16 27 C 0.16 3.14 3.65 -65.57 -0.24 2.91 16 28 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.11 2.99 5.83 -51.93 -0.30 2.68 16 31 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.07 1.45 7.62 -51.93 -0.40 1.05 16 33 H 0.07 1.38 6.82 -51.93 -0.35 1.03 16 34 H 0.40 5.89 8.31 -40.82 -0.34 5.55 16 35 H 0.26 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 38 H 0.06 0.94 7.43 -51.93 -0.39 0.56 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -32.24 348.51 -6.19 -38.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.08 Total: 4.37 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.22 Total: 8.54 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.30 Total: -57.08 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.11 Total: -10.81 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.24 -6.19 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.735 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds